Wall clock time and date at job start Wed Apr 1 2020 04:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29873 * 124.83740 * 2 1 4 4 C 1.36125 * 108.76793 * 180.02562 * 3 2 1 5 5 C 1.39266 * 133.76253 * 180.36483 * 4 3 2 6 6 C 1.39191 * 119.46653 * 180.10911 * 5 4 3 7 7 C 1.47715 * 119.95327 * 179.75483 * 6 5 4 8 8 O 1.21567 * 120.00069 * 359.73285 * 7 6 5 9 9 N 1.34778 * 120.00104 * 179.73013 * 7 6 5 10 10 C 1.46501 * 120.00005 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.45750 * 35.02980 * 10 9 7 12 12 C 1.53040 * 109.46278 * 275.06786 * 10 9 7 13 13 C 1.53617 * 109.24555 * 178.49062 * 12 10 9 14 14 N 1.46927 * 108.54187 * 54.85804 * 13 12 10 15 15 C 1.36932 * 120.63093 * 126.37253 * 14 13 12 16 16 H 1.07998 * 119.99686 * 207.55370 * 15 14 13 17 17 C 1.38804 * 120.00200 * 27.27487 * 15 14 13 18 18 N 1.31620 * 119.99800 * 17.92724 * 17 15 14 19 19 Si 1.86803 * 120.00172 * 197.92139 * 17 15 14 20 20 H 1.48507 * 109.46790 * 94.32202 * 19 17 15 21 21 H 1.48500 * 109.47358 * 214.31756 * 19 17 15 22 22 H 1.48498 * 109.47263 * 334.32151 * 19 17 15 23 23 C 1.46927 * 118.73683 * 306.09229 * 14 13 12 24 24 C 1.53038 * 109.46129 * 154.99967 * 10 9 7 25 25 H 1.09007 * 109.52460 * 61.41354 * 24 10 9 26 26 O 1.42905 * 109.49945 * 301.33929 * 24 10 9 27 27 C 1.40050 * 120.09516 * 359.48242 * 6 5 4 28 28 C 1.36523 * 120.47329 * 0.27223 * 27 6 5 29 29 C 1.38896 * 120.19211 * 359.97438 * 28 27 6 30 30 O 1.34248 * 124.83260 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.46973 * 89.99833 * 1 2 3 32 32 H 1.08997 * 109.47272 * 209.99953 * 1 2 3 33 33 H 1.09002 * 109.46897 * 330.00011 * 1 2 3 34 34 H 1.07998 * 120.26726 * 359.86847 * 5 4 3 35 35 H 0.96997 * 119.99924 * 359.97438 * 9 7 6 36 36 H 1.09003 * 109.49727 * 298.56991 * 12 10 9 37 37 H 1.08999 * 109.49557 * 58.65883 * 12 10 9 38 38 H 1.09004 * 109.74287 * 295.12064 * 13 12 10 39 39 H 1.08997 * 109.66854 * 174.54796 * 13 12 10 40 40 H 0.97009 * 119.99683 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.58639 * 173.65117 * 23 14 13 42 42 H 1.08999 * 109.58888 * 294.07241 * 23 14 13 43 43 H 0.96694 * 113.99954 * 180.16047 * 26 24 10 44 44 H 1.07999 * 119.76750 * 180.24670 * 27 6 5 45 45 H 1.08003 * 119.90506 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2489 1.0660 0.0000 4 6 3.5569 0.6892 -0.0006 5 6 4.7610 1.3890 0.0056 6 6 5.9619 0.6854 0.0004 7 6 7.2453 1.4169 0.0014 8 8 7.2520 2.6325 0.0017 9 7 8.4087 0.7365 0.0019 10 6 9.6815 1.4620 0.0035 11 1 9.5797 2.3726 0.5939 12 6 10.0626 1.8261 -1.4333 13 6 11.3782 2.6192 -1.4227 14 7 12.3933 1.8308 -0.7110 15 6 13.5986 1.5523 -1.2983 16 1 14.1422 0.6618 -1.0193 17 6 14.1188 2.4114 -2.2563 18 7 13.6623 3.6421 -2.3540 19 14 15.4669 1.8212 -3.4069 20 1 14.8596 1.3286 -4.6694 21 1 16.3890 2.9458 -3.7071 22 1 16.2237 0.7200 -2.7589 23 6 12.0931 1.3521 0.6453 24 6 10.7716 0.5780 0.6136 25 1 10.8913 -0.3218 0.0099 26 8 10.4005 0.2132 1.9446 27 6 5.9554 -0.7151 0.0002 28 6 4.7755 -1.4019 -0.0007 29 6 3.5678 -0.7158 -0.0008 30 8 2.2738 -1.1019 -0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 4.7628 2.4690 0.0103 35 1 8.4034 -0.2334 0.0021 36 1 10.1888 0.9151 -2.0183 37 1 9.2748 2.4363 -1.8751 38 1 11.2304 3.5708 -0.9120 39 1 11.7066 2.7987 -2.4464 40 1 14.0261 4.2426 -3.0234 41 1 12.8933 0.6954 0.9865 42 1 12.0023 2.2024 1.3212 43 1 11.0482 -0.3466 2.3940 44 1 6.8903 -1.2557 0.0002 45 1 4.7811 -2.4819 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090352790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:11 Heat of formation + Delta-G solvation = -48.473843 kcal Electronic energy + Delta-G solvation = -29582.895889 eV Core-core repulsion = 25373.425509 eV Total energy + Delta-G solvation = -4209.470380 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.41733 -41.39392 -39.73082 -38.53811 -36.96006 -36.09837 -35.81893 -33.87853 -32.78403 -32.06673 -31.58077 -30.23968 -29.11067 -27.09384 -25.38622 -24.01624 -23.68778 -23.33090 -22.72035 -21.89438 -21.24861 -19.54507 -18.84114 -18.68669 -18.03741 -18.02143 -17.71389 -17.08199 -16.82341 -16.15253 -16.04041 -15.66678 -15.47345 -15.28267 -14.99070 -14.89934 -14.77873 -14.47275 -14.13798 -14.10226 -13.87662 -13.68906 -13.44306 -13.43137 -13.26497 -12.97099 -12.73656 -12.73458 -12.38638 -12.37312 -12.10296 -12.04396 -11.88507 -11.66422 -11.44297 -11.13346 -10.99556 -10.57097 -10.22094 -9.92079 -9.67236 -8.77051 -7.89711 -5.36795 -0.48262 -0.40903 1.23704 1.34318 1.49110 1.50533 1.59770 1.67955 1.93782 2.49839 2.59030 2.76303 3.13202 3.27091 3.27977 3.54552 3.63079 3.81307 3.86133 3.88880 3.97942 4.06985 4.15894 4.23681 4.40605 4.52788 4.56745 4.59768 4.62192 4.68374 4.78455 4.84863 4.89052 4.93402 4.99910 5.02648 5.06111 5.13793 5.21370 5.32815 5.38453 5.42724 5.61199 5.66645 6.34227 6.43798 6.48068 6.91643 7.09924 7.14030 7.78678 8.31229 9.17557 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.002092 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.748214 B =13378.019790 C =13672.306040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.257 3.743 3 N -0.517 5.517 4 C -0.009 4.009 5 C -0.019 4.019 6 C -0.133 4.133 7 C 0.557 3.443 8 O -0.582 6.582 9 N -0.691 5.691 10 C 0.169 3.831 11 H 0.055 0.945 12 C -0.130 4.130 13 C 0.178 3.822 14 N -0.603 5.603 15 C -0.262 4.262 16 H 0.079 0.921 17 C -0.053 4.053 18 N -0.938 5.938 19 Si 0.971 3.029 20 H -0.286 1.286 21 H -0.300 1.300 22 H -0.262 1.262 23 C 0.116 3.884 24 C 0.103 3.897 25 H 0.080 0.920 26 O -0.570 6.570 27 C -0.053 4.053 28 C -0.079 4.079 29 C 0.017 3.983 30 O -0.212 6.212 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.114 0.886 34 H 0.128 0.872 35 H 0.415 0.585 36 H 0.075 0.925 37 H 0.055 0.945 38 H -0.010 1.010 39 H 0.063 0.937 40 H 0.250 0.750 41 H 0.078 0.922 42 H 0.010 0.990 43 H 0.397 0.603 44 H 0.180 0.820 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.661 -17.465 5.851 29.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.046 3.954 3 N -0.248 5.248 4 C -0.119 4.119 5 C -0.040 4.040 6 C -0.137 4.137 7 C 0.346 3.654 8 O -0.463 6.463 9 N -0.342 5.342 10 C 0.064 3.936 11 H 0.074 0.926 12 C -0.170 4.170 13 C 0.052 3.948 14 N -0.327 5.327 15 C -0.392 4.392 16 H 0.097 0.903 17 C -0.249 4.249 18 N -0.583 5.583 19 Si 0.799 3.201 20 H -0.213 1.213 21 H -0.227 1.227 22 H -0.186 1.186 23 C -0.010 4.010 24 C 0.042 3.958 25 H 0.098 0.902 26 O -0.378 6.378 27 C -0.072 4.072 28 C -0.098 4.098 29 C -0.034 4.034 30 O -0.104 6.104 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.146 0.854 35 H 0.254 0.746 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.008 0.992 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.028 0.972 43 H 0.247 0.753 44 H 0.197 0.803 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -24.300 -15.551 5.644 29.397 hybrid contribution 1.665 -0.335 -0.550 1.785 sum -22.635 -15.886 5.094 28.119 Atomic orbital electron populations 1.20805 0.76847 1.07353 1.07040 1.27656 0.98329 0.77195 0.92226 1.70665 1.00998 1.30588 1.22508 1.19843 0.92172 0.92419 1.07465 1.20312 0.88385 1.00488 0.94769 1.19662 0.91568 0.94945 1.07573 1.18405 0.84507 0.86773 0.75762 1.90788 1.88071 1.15549 1.51885 1.45676 1.04215 1.10866 1.73440 1.20699 0.81976 0.94950 0.95937 0.92625 1.22401 0.97918 1.01104 0.95556 1.20650 0.86077 0.90577 0.97508 1.44280 1.13920 1.62334 1.12178 1.19588 0.97350 1.03546 1.18695 0.90299 1.25889 1.00994 0.94655 1.03335 1.70219 1.46631 1.05339 1.36148 0.85201 0.78559 0.77217 0.79141 1.21258 1.22734 1.18628 1.21712 0.95919 0.96685 0.86711 1.22300 0.92730 0.96869 0.83868 0.90174 1.86459 1.50311 1.73542 1.27469 1.21192 0.99576 0.91142 0.95267 1.19953 0.85534 1.02393 1.01880 1.20875 0.84997 0.93867 1.03661 1.84504 1.14927 1.36593 1.74403 0.86189 0.86186 0.86712 0.85381 0.74603 0.90673 0.92659 0.99161 0.91831 0.94097 0.90359 0.97214 0.75267 0.80283 0.80010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.32 10.51 71.24 0.75 0.42 16 2 C 0.26 4.45 8.23 88.40 0.73 5.18 16 3 N -0.52 -13.02 11.34 -296.34 -3.36 -16.38 16 4 C -0.01 -0.23 7.23 39.28 0.28 0.06 16 5 C -0.02 -0.55 9.64 22.75 0.22 -0.34 16 6 C -0.13 -3.37 5.87 -20.10 -0.12 -3.49 16 7 C 0.56 17.76 7.73 86.75 0.67 18.43 16 8 O -0.58 -24.29 15.99 -3.93 -0.06 -24.35 16 9 N -0.69 -19.09 4.87 -445.40 -2.17 -21.26 16 10 C 0.17 5.91 2.11 45.02 0.10 6.00 16 11 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 12 C -0.13 -5.08 5.67 30.82 0.17 -4.90 16 13 C 0.18 8.82 5.34 86.51 0.46 9.28 16 14 N -0.60 -29.20 2.99 -698.29 -2.09 -31.29 16 15 C -0.26 -13.72 9.59 84.03 0.81 -12.91 16 16 H 0.08 3.89 7.89 -2.91 -0.02 3.86 16 17 C -0.05 -2.92 4.90 84.86 0.42 -2.50 16 18 N -0.94 -55.63 11.19 21.65 0.24 -55.38 16 19 Si 0.97 43.67 29.59 68.60 2.03 45.70 16 20 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 22 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 23 C 0.12 4.51 6.14 86.36 0.53 5.04 16 24 C 0.10 3.15 3.14 30.67 0.10 3.24 16 25 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 26 O -0.57 -14.44 13.16 -148.98 -1.96 -16.40 16 27 C -0.05 -0.86 9.47 22.31 0.21 -0.65 16 28 C -0.08 -1.17 9.99 22.03 0.22 -0.95 16 29 C 0.02 0.36 7.43 22.98 0.17 0.53 16 30 O -0.21 -3.94 10.77 -9.40 -0.10 -4.04 16 31 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.13 4.08 7.64 -2.91 -0.02 4.05 16 35 H 0.42 8.01 6.61 -92.71 -0.61 7.40 16 36 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 38 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 39 H 0.06 3.52 6.02 -2.39 -0.01 3.51 16 40 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 41 H 0.08 2.74 7.93 -2.39 -0.02 2.72 16 42 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.40 6.31 9.08 -74.06 -0.67 5.64 16 44 H 0.18 1.58 6.37 -2.91 -0.02 1.56 16 45 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -80.89 374.84 -1.98 -82.87 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -0.23 Total: 18.08 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 5.71 Total: 22.45 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -7.37 Total: -124.31 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: -2.12 Total: -44.79 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -80.89 -1.98 -82.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090352790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.400 kcal (2) G-P(sol) polarization free energy of solvation -80.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds