Wall clock time and date at job start Wed Apr 1 2020 04:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30093 * 124.87679 * 2 1 4 4 C 1.35587 * 108.83711 * 179.97438 * 3 2 1 5 5 C 1.40282 * 106.62303 * 359.97438 * 4 3 2 6 6 C 1.38589 * 119.92880 * 180.02562 * 5 4 3 7 7 C 1.38224 * 120.20967 * 0.02562 * 6 5 4 8 8 C 1.38184 * 120.67197 * 0.02562 * 7 6 5 9 9 C 1.39366 * 120.24530 * 359.97202 * 8 7 6 10 10 C 1.47430 * 120.29499 * 180.02562 * 9 8 7 11 11 O 1.21611 * 119.99625 * 180.02562 * 10 9 8 12 12 N 1.34767 * 120.00484 * 0.02562 * 10 9 8 13 13 C 1.46498 * 120.00233 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.45886 * 35.00317 * 13 12 10 15 15 C 1.53042 * 109.46412 * 275.03175 * 13 12 10 16 16 C 1.53184 * 109.31652 * 178.61508 * 15 13 12 17 17 N 1.46927 * 108.77830 * 54.63043 * 16 15 13 18 18 C 1.36941 * 120.62951 * 126.36857 * 17 16 15 19 19 H 1.08003 * 119.99881 * 331.83712 * 18 17 16 20 20 C 1.38809 * 119.99802 * 151.82969 * 18 17 16 21 21 N 1.31620 * 120.00099 * 343.09498 * 20 18 17 22 22 Si 1.86799 * 119.99993 * 163.09062 * 20 18 17 23 23 H 1.48503 * 109.47021 * 59.99955 * 22 20 18 24 24 H 1.48502 * 109.47245 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47224 * 300.00371 * 22 20 18 26 26 C 1.46928 * 118.73858 * 306.39543 * 17 16 15 27 27 C 1.53046 * 109.46362 * 154.97588 * 13 12 10 28 28 H 1.08997 * 109.49568 * 301.34069 * 27 13 12 29 29 O 1.42901 * 109.49392 * 61.43154 * 27 13 12 30 30 O 1.34142 * 124.88484 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47530 * 90.00665 * 1 2 3 32 32 H 1.09006 * 109.46869 * 210.00405 * 1 2 3 33 33 H 1.09003 * 109.47714 * 330.00012 * 1 2 3 34 34 H 1.07998 * 119.89562 * 180.27584 * 6 5 4 35 35 H 1.07994 * 119.66184 * 179.97438 * 7 6 5 36 36 H 1.08002 * 119.87580 * 180.02562 * 8 7 6 37 37 H 0.97003 * 119.99946 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.49447 * 298.56557 * 15 13 12 39 39 H 1.08998 * 109.49415 * 58.65832 * 15 13 12 40 40 H 1.08994 * 109.59010 * 174.42333 * 16 15 13 41 41 H 1.09001 * 109.58683 * 294.84458 * 16 15 13 42 42 H 0.96998 * 119.99911 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.57998 * 173.39192 * 26 17 16 44 44 H 1.08997 * 109.58515 * 293.67304 * 26 17 16 45 45 H 0.96699 * 113.99850 * 180.02562 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2508 1.0673 0.0000 4 6 3.5539 0.6926 0.0006 5 6 3.5682 -0.7101 0.0015 6 6 4.7762 -1.3893 0.0028 7 6 5.9679 -0.6889 0.0037 8 6 5.9734 0.6929 0.0038 9 6 4.7722 1.3997 0.0025 10 6 4.7768 2.8740 0.0021 11 8 3.7254 3.4852 0.0014 12 7 5.9459 3.5443 0.0025 13 6 5.9504 5.0093 0.0015 14 1 5.1092 5.3753 0.5902 15 6 5.8264 5.5186 -1.4364 16 6 5.7966 7.0502 -1.4306 17 7 6.9816 7.5436 -0.7156 18 6 7.8246 8.4485 -1.3036 19 1 7.9237 8.4748 -2.3788 20 6 8.5517 9.3320 -0.5178 21 7 8.2032 9.5390 0.7345 22 14 10.0248 10.2273 -1.2374 23 1 9.5873 11.0513 -2.3928 24 1 10.6249 11.1056 -0.2012 25 1 11.0337 9.2361 -1.6902 26 6 7.2452 7.0472 0.6419 27 6 7.2591 5.5156 0.6125 28 1 7.3581 5.1334 1.6284 29 8 8.3606 5.0633 -0.1775 30 8 2.2741 -1.1004 0.0005 31 1 -0.3634 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 4.7866 -2.4692 -0.0009 35 1 6.9042 -1.2271 0.0051 36 1 6.9120 1.2272 0.0041 37 1 6.7845 3.0567 0.0027 38 1 6.6804 5.1736 -2.0194 39 1 4.9057 5.1384 -1.8788 40 1 5.8082 7.4198 -2.4559 41 1 4.8948 7.3962 -0.9255 42 1 8.7115 10.1561 1.2837 43 1 8.2127 7.4148 0.9838 44 1 6.4630 7.3950 1.3164 45 1 9.2240 5.3475 0.1523 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090836733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:20 Heat of formation + Delta-G solvation = -14.062919 kcal Electronic energy + Delta-G solvation = -30190.060877 eV Core-core repulsion = 25982.082667 eV Total energy + Delta-G solvation = -4207.978210 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.52873 -39.93108 -38.32637 -37.43617 -35.09507 -34.77959 -34.25041 -32.31905 -31.88871 -31.14936 -29.23018 -28.96734 -28.40291 -25.29073 -23.92684 -23.21181 -22.30170 -22.07603 -21.60052 -20.22073 -19.42949 -18.31005 -17.84445 -17.16311 -17.13157 -16.70086 -15.94961 -15.52650 -15.40523 -14.95486 -14.63612 -14.24342 -14.08293 -13.99406 -13.79112 -13.72236 -13.60323 -13.23820 -13.11549 -12.81974 -12.50998 -12.37647 -12.24094 -12.02045 -11.96141 -11.51971 -11.24224 -11.11493 -10.78329 -10.69570 -10.57991 -10.45060 -10.15656 -10.04217 -9.75512 -9.54520 -9.17212 -9.15828 -8.76938 -8.59771 -8.46616 -6.66359 -5.80405 -3.21328 0.10339 0.79829 2.16767 2.17454 2.79118 3.27243 3.38172 3.43547 3.45272 3.52449 3.67285 4.24243 4.45104 4.48826 4.60488 4.68665 4.75501 4.83884 4.98651 5.00087 5.09128 5.29586 5.32002 5.40354 5.46612 5.51778 5.60337 5.63720 5.83629 5.86067 5.94308 5.98779 6.06718 6.22195 6.24441 6.31558 6.50643 6.60103 6.82759 6.89455 7.01643 7.19323 7.41666 7.44482 7.76621 7.79960 8.24682 8.44239 8.46090 9.19180 9.82248 10.39605 11.28456 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.002395 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.264332 B =11686.621438 C =12415.775939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.244 3.756 3 N -0.451 5.451 4 C 0.074 3.926 5 C -0.004 4.004 6 C -0.070 4.070 7 C -0.102 4.102 8 C -0.085 4.085 9 C -0.073 4.073 10 C 0.547 3.453 11 O -0.511 6.511 12 N -0.714 5.714 13 C 0.164 3.836 14 H 0.091 0.909 15 C -0.136 4.136 16 C 0.148 3.852 17 N -0.583 5.583 18 C -0.243 4.243 19 H 0.065 0.935 20 C -0.001 4.001 21 N -0.908 5.908 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.292 1.292 25 H -0.284 1.284 26 C 0.146 3.854 27 C 0.073 3.927 28 H 0.044 0.956 29 O -0.560 6.560 30 O -0.215 6.215 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.399 0.601 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.020 0.980 42 H 0.254 0.746 43 H 0.095 0.905 44 H 0.028 0.972 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.325 -24.484 1.079 25.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.033 3.967 3 N -0.180 5.180 4 C -0.040 4.040 5 C -0.055 4.055 6 C -0.089 4.089 7 C -0.120 4.120 8 C -0.104 4.104 9 C -0.077 4.077 10 C 0.332 3.668 11 O -0.387 6.387 12 N -0.366 5.366 13 C 0.061 3.939 14 H 0.109 0.891 15 C -0.177 4.177 16 C 0.021 3.979 17 N -0.305 5.305 18 C -0.372 4.372 19 H 0.083 0.917 20 C -0.199 4.199 21 N -0.553 5.553 22 Si 0.733 3.267 23 H -0.209 1.209 24 H -0.218 1.218 25 H -0.211 1.211 26 C 0.018 3.982 27 C 0.012 3.988 28 H 0.061 0.939 29 O -0.365 6.365 30 O -0.108 6.108 31 H 0.118 0.882 32 H 0.111 0.889 33 H 0.126 0.874 34 H 0.157 0.843 35 H 0.165 0.835 36 H 0.161 0.839 37 H 0.234 0.766 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.064 0.936 43 H 0.113 0.887 44 H 0.046 0.954 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -8.732 -23.519 0.842 25.101 hybrid contribution 1.908 -0.217 0.061 1.922 sum -6.824 -23.736 0.903 24.714 Atomic orbital electron populations 1.20436 0.80648 1.05671 1.05295 1.26807 0.96921 0.78109 0.94878 1.70824 1.00630 1.27863 1.18645 1.19541 0.91652 0.90503 1.02262 1.20241 0.84178 0.94207 1.06834 1.20024 0.87288 1.00463 1.01173 1.20947 0.97362 0.93726 0.99979 1.21372 0.97018 0.94493 0.97564 1.19401 0.90500 0.93926 1.03907 1.17969 0.84569 0.86306 0.77940 1.90855 1.30923 1.68911 1.47972 1.46132 1.07803 1.08126 1.74549 1.21019 0.97159 0.77411 0.98343 0.89085 1.22305 1.01030 0.98845 0.95473 1.20893 0.89888 0.90413 0.96659 1.43871 1.24477 1.48200 1.13951 1.19143 1.17370 1.09162 0.91553 0.91738 1.25026 1.00919 0.97279 0.96665 1.70009 1.39715 1.37905 1.07650 0.86352 0.83016 0.79258 0.78043 1.20921 1.21750 1.21071 1.21431 1.02615 0.86824 0.87287 1.22839 0.85706 0.98535 0.91712 0.93859 1.86342 1.16628 1.77335 1.56229 1.84484 1.15054 1.36460 1.74775 0.88219 0.88913 0.87373 0.84330 0.83470 0.83887 0.76566 0.91213 0.92852 0.92454 0.96200 0.93603 0.88655 0.95402 0.77835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 36.00 0.38 0.00 16 2 C 0.24 2.81 8.24 -13.02 -0.11 2.70 16 3 N -0.45 -7.06 10.62 -8.48 -0.09 -7.15 16 4 C 0.07 1.12 6.84 -84.45 -0.58 0.54 16 5 C 0.00 -0.05 7.42 -38.68 -0.29 -0.34 16 6 C -0.07 -0.61 10.05 -39.46 -0.40 -1.01 16 7 C -0.10 -0.79 10.01 -39.61 -0.40 -1.18 16 8 C -0.08 -0.85 9.53 -39.18 -0.37 -1.22 16 9 C -0.07 -1.04 5.90 -104.74 -0.62 -1.66 16 10 C 0.55 9.36 7.73 -12.52 -0.10 9.26 16 11 O -0.51 -10.76 15.73 5.27 0.08 -10.67 16 12 N -0.71 -11.18 5.00 -54.84 -0.27 -11.46 16 13 C 0.16 3.02 2.20 -67.89 -0.15 2.87 16 14 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 15 C -0.14 -2.68 5.51 -26.61 -0.15 -2.82 16 16 C 0.15 3.29 6.52 -3.71 -0.02 3.26 16 17 N -0.58 -14.48 2.93 -172.33 -0.51 -14.99 16 18 C -0.24 -6.58 9.58 -15.06 -0.14 -6.73 16 19 H 0.06 1.75 7.89 -52.48 -0.41 1.33 16 20 C 0.00 -0.03 4.92 -17.43 -0.09 -0.11 16 21 N -0.91 -25.75 11.20 55.49 0.62 -25.13 16 22 Si 0.90 21.40 29.59 -169.99 -5.03 16.37 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.15 3.33 4.95 -3.71 -0.02 3.31 16 27 C 0.07 1.34 3.38 -26.61 -0.09 1.25 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 29 O -0.56 -9.74 12.08 -35.23 -0.43 -10.16 16 30 O -0.22 -2.50 10.77 3.72 0.04 -2.46 16 31 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 36 H 0.14 1.12 6.39 -52.49 -0.34 0.78 16 37 H 0.40 5.24 6.29 -40.82 -0.26 4.98 16 38 H 0.07 1.42 7.61 -51.92 -0.40 1.02 16 39 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 43 H 0.10 2.37 6.06 -51.93 -0.31 2.06 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.37 5.63 9.08 45.56 0.41 6.04 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -35.82 372.77 -8.14 -43.96 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -5.05 Total: 7.96 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: -3.13 Total: 8.11 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: -0.25 Total: -58.73 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.30 Total: -23.29 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.82 -8.14 -43.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090836733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.895 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds