Wall clock time and date at job start Wed Apr 1 2020 04:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30093 * 124.87679 * 2 1 4 4 C 1.35587 * 108.83711 * 179.97438 * 3 2 1 5 5 C 1.40282 * 106.62303 * 359.97438 * 4 3 2 6 6 C 1.38589 * 119.92880 * 180.02562 * 5 4 3 7 7 C 1.38224 * 120.20967 * 0.02562 * 6 5 4 8 8 C 1.38184 * 120.67197 * 0.02562 * 7 6 5 9 9 C 1.39366 * 120.24530 * 359.97202 * 8 7 6 10 10 C 1.47430 * 120.29499 * 180.02562 * 9 8 7 11 11 O 1.21611 * 119.99625 * 180.02562 * 10 9 8 12 12 N 1.34767 * 120.00484 * 0.02562 * 10 9 8 13 13 C 1.46498 * 120.00233 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.45886 * 35.00317 * 13 12 10 15 15 C 1.53042 * 109.46412 * 275.03175 * 13 12 10 16 16 C 1.53184 * 109.31652 * 178.61508 * 15 13 12 17 17 N 1.46927 * 108.77830 * 54.63043 * 16 15 13 18 18 C 1.36941 * 120.62951 * 126.36857 * 17 16 15 19 19 H 1.08003 * 119.99881 * 331.83712 * 18 17 16 20 20 C 1.38809 * 119.99802 * 151.82969 * 18 17 16 21 21 N 1.31620 * 120.00099 * 343.09498 * 20 18 17 22 22 Si 1.86799 * 119.99993 * 163.09062 * 20 18 17 23 23 H 1.48503 * 109.47021 * 59.99955 * 22 20 18 24 24 H 1.48502 * 109.47245 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47224 * 300.00371 * 22 20 18 26 26 C 1.46928 * 118.73858 * 306.39543 * 17 16 15 27 27 C 1.53046 * 109.46362 * 154.97588 * 13 12 10 28 28 H 1.08997 * 109.49568 * 301.34069 * 27 13 12 29 29 O 1.42901 * 109.49392 * 61.43154 * 27 13 12 30 30 O 1.34142 * 124.88484 * 179.97438 * 2 1 3 31 31 H 1.08996 * 109.47530 * 90.00665 * 1 2 3 32 32 H 1.09006 * 109.46869 * 210.00405 * 1 2 3 33 33 H 1.09003 * 109.47714 * 330.00012 * 1 2 3 34 34 H 1.07998 * 119.89562 * 180.27584 * 6 5 4 35 35 H 1.07994 * 119.66184 * 179.97438 * 7 6 5 36 36 H 1.08002 * 119.87580 * 180.02562 * 8 7 6 37 37 H 0.97003 * 119.99946 * 0.02562 * 12 10 9 38 38 H 1.09009 * 109.49447 * 298.56557 * 15 13 12 39 39 H 1.08998 * 109.49415 * 58.65832 * 15 13 12 40 40 H 1.08994 * 109.59010 * 174.42333 * 16 15 13 41 41 H 1.09001 * 109.58683 * 294.84458 * 16 15 13 42 42 H 0.96998 * 119.99911 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.57998 * 173.39192 * 26 17 16 44 44 H 1.08997 * 109.58515 * 293.67304 * 26 17 16 45 45 H 0.96699 * 113.99850 * 180.02562 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2508 1.0673 0.0000 4 6 3.5539 0.6926 0.0006 5 6 3.5682 -0.7101 0.0015 6 6 4.7762 -1.3893 0.0028 7 6 5.9679 -0.6889 0.0037 8 6 5.9734 0.6929 0.0038 9 6 4.7722 1.3997 0.0025 10 6 4.7768 2.8740 0.0021 11 8 3.7254 3.4852 0.0014 12 7 5.9459 3.5443 0.0025 13 6 5.9504 5.0093 0.0015 14 1 5.1092 5.3753 0.5902 15 6 5.8264 5.5186 -1.4364 16 6 5.7966 7.0502 -1.4306 17 7 6.9816 7.5436 -0.7156 18 6 7.8246 8.4485 -1.3036 19 1 7.9237 8.4748 -2.3788 20 6 8.5517 9.3320 -0.5178 21 7 8.2032 9.5390 0.7345 22 14 10.0248 10.2273 -1.2374 23 1 9.5873 11.0513 -2.3928 24 1 10.6249 11.1056 -0.2012 25 1 11.0337 9.2361 -1.6902 26 6 7.2452 7.0472 0.6419 27 6 7.2591 5.5156 0.6125 28 1 7.3581 5.1334 1.6284 29 8 8.3606 5.0633 -0.1775 30 8 2.2741 -1.1004 0.0005 31 1 -0.3634 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 4.7866 -2.4692 -0.0009 35 1 6.9042 -1.2271 0.0051 36 1 6.9120 1.2272 0.0041 37 1 6.7845 3.0567 0.0027 38 1 6.6804 5.1736 -2.0194 39 1 4.9057 5.1384 -1.8788 40 1 5.8082 7.4198 -2.4559 41 1 4.8948 7.3962 -0.9255 42 1 8.7115 10.1561 1.2837 43 1 8.2127 7.4148 0.9838 44 1 6.4630 7.3950 1.3164 45 1 9.2240 5.3475 0.1523 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090836733.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:19 Heat of formation + Delta-G solvation = -43.456175 kcal Electronic energy + Delta-G solvation = -30191.335464 eV Core-core repulsion = 25982.082667 eV Total energy + Delta-G solvation = -4209.252797 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.36694 -41.24534 -39.66825 -38.55131 -36.50192 -36.02714 -35.66421 -34.02264 -32.59854 -32.33273 -30.94968 -30.54747 -29.12231 -27.08620 -25.02708 -24.32132 -23.89120 -23.20282 -22.84823 -21.46828 -21.00226 -19.34283 -19.08395 -18.66319 -17.99183 -17.71798 -17.39959 -17.06544 -16.70083 -16.26822 -16.00331 -15.72634 -15.42680 -15.32957 -15.08110 -14.85660 -14.70681 -14.51656 -14.10297 -13.85001 -13.66959 -13.65067 -13.38398 -13.12696 -13.10348 -12.96757 -12.77388 -12.61571 -12.39168 -12.31621 -12.25975 -12.04180 -11.84838 -11.65744 -11.46550 -10.92307 -10.73534 -10.57873 -10.14277 -9.91398 -9.52650 -8.68261 -7.87408 -5.32312 -0.74219 0.00725 1.32375 1.41805 1.50110 1.50818 1.58689 1.74121 2.02156 2.52352 2.67231 2.80576 3.24015 3.35113 3.40379 3.63184 3.73155 3.76974 3.86348 3.98878 4.03116 4.06130 4.25582 4.32643 4.38156 4.57455 4.58263 4.60019 4.66273 4.69429 4.75588 4.86509 4.92752 4.93866 5.04065 5.11387 5.13772 5.16700 5.23314 5.40155 5.45405 5.54385 5.55530 5.65068 6.37062 6.52218 6.59135 6.92810 7.14565 7.20777 7.81670 8.35808 9.19146 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.002395 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.264332 B =11686.621438 C =12415.775939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.250 3.750 3 N -0.514 5.514 4 C 0.039 3.961 5 C -0.023 4.023 6 C -0.054 4.054 7 C -0.090 4.090 8 C -0.067 4.067 9 C -0.116 4.116 10 C 0.546 3.454 11 O -0.563 6.563 12 N -0.700 5.700 13 C 0.170 3.830 14 H 0.069 0.931 15 C -0.119 4.119 16 C 0.146 3.854 17 N -0.597 5.597 18 C -0.256 4.256 19 H 0.062 0.938 20 C -0.046 4.046 21 N -0.936 5.936 22 Si 0.969 3.031 23 H -0.282 1.282 24 H -0.294 1.294 25 H -0.274 1.274 26 C 0.150 3.850 27 C 0.094 3.906 28 H 0.071 0.929 29 O -0.559 6.559 30 O -0.215 6.215 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.107 0.893 34 H 0.177 0.823 35 H 0.197 0.803 36 H 0.167 0.833 37 H 0.414 0.586 38 H 0.068 0.932 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.008 0.992 42 H 0.251 0.749 43 H 0.076 0.924 44 H 0.002 0.998 45 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.503 -27.928 0.708 28.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.039 3.961 3 N -0.244 5.244 4 C -0.074 4.074 5 C -0.074 4.074 6 C -0.072 4.072 7 C -0.107 4.107 8 C -0.087 4.087 9 C -0.120 4.120 10 C 0.334 3.666 11 O -0.443 6.443 12 N -0.352 5.352 13 C 0.066 3.934 14 H 0.087 0.913 15 C -0.159 4.159 16 C 0.020 3.980 17 N -0.320 5.320 18 C -0.386 4.386 19 H 0.079 0.921 20 C -0.242 4.242 21 N -0.582 5.582 22 Si 0.797 3.203 23 H -0.208 1.208 24 H -0.220 1.220 25 H -0.200 1.200 26 C 0.023 3.977 27 C 0.033 3.967 28 H 0.089 0.911 29 O -0.366 6.366 30 O -0.107 6.107 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.194 0.806 35 H 0.214 0.786 36 H 0.184 0.816 37 H 0.252 0.748 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.026 0.974 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.020 0.980 45 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -6.876 -27.010 0.463 27.876 hybrid contribution 1.291 0.784 0.167 1.520 sum -5.585 -26.226 0.630 26.822 Atomic orbital electron populations 1.20740 0.77291 1.07049 1.06829 1.27749 0.98427 0.77426 0.92459 1.70780 1.01923 1.30157 1.21504 1.19919 0.91727 0.92279 1.03507 1.20715 0.85257 0.93385 1.07994 1.20654 0.86052 1.02388 0.98137 1.21518 0.98903 0.92657 0.97659 1.21743 0.96125 0.95816 0.95002 1.19306 0.92195 0.91966 1.08518 1.18502 0.83817 0.87815 0.76452 1.90816 1.32674 1.70296 1.50478 1.45837 1.08411 1.06715 1.74245 1.20695 0.96510 0.79236 0.97003 0.91335 1.22064 1.00704 0.96704 0.96406 1.20944 0.88716 0.92206 0.96179 1.44089 1.24986 1.48370 1.14560 1.19395 1.17814 1.09745 0.91687 0.92051 1.25735 1.03249 0.98153 0.97027 1.70163 1.40672 1.38604 1.08796 0.85321 0.79838 0.78068 0.77034 1.20792 1.22049 1.19969 1.21329 1.00469 0.89994 0.85874 1.22454 0.86053 0.94987 0.93232 0.91142 1.86311 1.17066 1.76876 1.56303 1.84482 1.15090 1.36338 1.74795 0.86379 0.85915 0.87479 0.80564 0.78606 0.81604 0.74756 0.91309 0.93126 0.92515 0.97398 0.93954 0.90599 0.98004 0.76312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.51 71.23 0.75 0.04 16 2 C 0.25 5.81 8.24 88.36 0.73 6.54 16 3 N -0.51 -16.91 10.62 -295.54 -3.14 -20.05 16 4 C 0.04 1.19 6.84 39.70 0.27 1.46 16 5 C -0.02 -0.54 7.42 22.85 0.17 -0.37 16 6 C -0.05 -0.73 10.05 22.35 0.22 -0.51 16 7 C -0.09 -0.96 10.01 22.25 0.22 -0.74 16 8 C -0.07 -1.15 9.53 22.53 0.21 -0.94 16 9 C -0.12 -3.28 5.90 -19.94 -0.12 -3.40 16 10 C 0.55 19.20 7.73 86.67 0.67 19.87 16 11 O -0.56 -25.20 15.73 -4.07 -0.06 -25.26 16 12 N -0.70 -21.60 5.00 -445.67 -2.23 -23.83 16 13 C 0.17 6.34 2.20 45.02 0.10 6.43 16 14 H 0.07 2.90 7.58 -2.39 -0.02 2.88 16 15 C -0.12 -4.74 5.51 30.67 0.17 -4.57 16 16 C 0.15 6.68 6.52 86.36 0.56 7.24 16 17 N -0.60 -30.33 2.93 -699.12 -2.05 -32.38 16 18 C -0.26 -14.07 9.58 84.03 0.81 -13.27 16 19 H 0.06 3.35 7.89 -2.91 -0.02 3.32 16 20 C -0.05 -2.54 4.92 84.86 0.42 -2.12 16 21 N -0.94 -54.09 11.20 21.65 0.24 -53.85 16 22 Si 0.97 44.09 29.59 68.60 2.03 46.12 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 C 0.15 7.02 4.95 86.36 0.43 7.44 16 27 C 0.09 3.38 3.38 30.67 0.10 3.48 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 O -0.56 -18.36 12.08 -148.98 -1.80 -20.16 16 30 O -0.21 -4.79 10.77 -9.61 -0.10 -4.89 16 31 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.18 1.05 8.06 -2.91 -0.02 1.02 16 35 H 0.20 0.25 8.06 -2.91 -0.02 0.22 16 36 H 0.17 1.94 6.39 -2.91 -0.02 1.92 16 37 H 0.41 10.03 6.29 -92.71 -0.58 9.45 16 38 H 0.07 2.77 7.61 -2.38 -0.02 2.75 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.06 2.54 7.93 -2.39 -0.02 2.53 16 41 H 0.01 0.38 8.14 -2.39 -0.02 0.37 16 42 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 43 H 0.08 3.84 6.06 -2.39 -0.01 3.83 16 44 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 45 H 0.39 10.80 9.08 -74.06 -0.67 10.13 16 Total: -1.00 -83.27 372.77 -1.60 -84.87 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -0.20 Total: 22.82 kcal Atomic # 6 Polarization: 20.90 SS G_CDS: 5.72 Total: 26.61 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -7.18 Total: -130.11 kcal Atomic # 8 Polarization: -48.35 SS G_CDS: -1.97 Total: -50.32 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -83.27 -1.60 -84.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090836733.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.411 kcal (2) G-P(sol) polarization free energy of solvation -83.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds