Wall clock time and date at job start Wed Apr 1 2020 02:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35449 * 125.56510 * 2 1 4 4 C 1.39841 * 107.86888 * 180.02562 * 3 2 1 5 5 C 1.37870 * 107.08122 * 0.02562 * 4 3 2 6 6 C 1.46681 * 126.23147 * 180.02562 * 5 4 3 7 7 O 1.21701 * 119.99655 * 195.19459 * 6 5 4 8 8 N 1.34778 * 119.99953 * 15.19673 * 6 5 4 9 9 C 1.48144 * 127.83561 * 177.84986 * 8 6 5 10 10 C 1.54385 * 104.61668 * 219.60414 * 9 8 6 11 11 H 1.09003 * 110.34015 * 95.00957 * 10 9 8 12 12 C 1.53001 * 110.34431 * 217.26080 * 10 9 8 13 13 F 1.39898 * 109.46953 * 175.53743 * 12 10 9 14 14 F 1.39898 * 109.47435 * 295.54091 * 12 10 9 15 15 F 1.39901 * 109.46727 * 55.54153 * 12 10 9 16 16 C 1.54279 * 104.96415 * 336.13905 * 10 9 8 17 17 H 1.08997 * 110.43077 * 241.08430 * 16 10 9 18 18 N 1.46495 * 110.34805 * 118.86854 * 16 10 9 19 19 C 1.36933 * 120.00325 * 158.01397 * 18 16 10 20 20 H 1.07999 * 120.00035 * 359.97438 * 19 18 16 21 21 C 1.38814 * 120.00133 * 180.02562 * 19 18 16 22 22 N 1.31612 * 119.99893 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00001 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47248 * 89.99785 * 23 21 19 25 25 H 1.48498 * 109.47274 * 209.99801 * 23 21 19 26 26 H 1.48502 * 109.47312 * 329.99818 * 23 21 19 27 27 C 1.48140 * 127.83593 * 357.87910 * 8 6 5 28 28 N 1.35539 * 125.56471 * 180.35080 * 2 1 3 29 29 C 1.46499 * 125.67979 * 0.02562 * 28 2 1 30 30 H 1.08998 * 109.47312 * 89.97328 * 1 2 3 31 31 H 1.09001 * 109.47424 * 209.97436 * 1 2 3 32 32 H 1.08996 * 109.47060 * 329.97580 * 1 2 3 33 33 H 1.08003 * 126.06848 * 0.06757 * 3 2 1 34 34 H 1.07996 * 126.45955 * 179.97438 * 4 3 2 35 35 H 1.08997 * 110.40760 * 100.82139 * 9 8 6 36 36 H 1.09001 * 110.51113 * 338.44257 * 9 8 6 37 37 H 0.97003 * 119.99756 * 338.01018 * 18 16 10 38 38 H 0.97001 * 119.99984 * 179.97438 * 22 21 19 39 39 H 1.08994 * 110.41230 * 21.60908 * 27 8 6 40 40 H 1.09000 * 110.40532 * 259.17082 * 27 8 6 41 41 H 1.09005 * 109.46831 * 264.55552 * 29 28 2 42 42 H 1.09001 * 109.47060 * 24.54866 * 29 28 2 43 43 H 1.08998 * 109.47545 * 144.55159 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6767 -0.0006 5 6 3.6122 -0.7019 -0.0015 6 6 4.7860 -1.5815 -0.0019 7 8 4.6630 -2.7601 -0.2790 8 7 6.0007 -1.0844 0.3047 9 6 7.2848 -1.8170 0.3999 10 6 7.9968 -1.1980 1.6219 11 1 7.8018 -1.7918 2.5150 12 6 9.5020 -1.0984 1.3664 13 9 10.1150 -0.4438 2.4401 14 9 10.0390 -2.3837 1.2358 15 9 9.7284 -0.3766 0.1895 16 6 7.3835 0.2099 1.7694 17 1 8.1535 0.9737 1.6607 18 7 6.7164 0.3415 3.0670 19 6 6.5027 1.5828 3.6043 20 1 6.8263 2.4648 3.0716 21 6 5.8711 1.7075 4.8341 22 7 5.4771 0.6326 5.4835 23 14 5.5802 3.4007 5.5673 24 1 4.2619 3.9152 5.1173 25 1 5.5957 3.3078 7.0493 26 1 6.6519 4.3254 5.1181 27 6 6.3544 0.3184 0.6235 28 7 2.2953 -1.1025 -0.0068 29 6 1.8242 -2.4897 -0.0158 30 1 -0.3634 0.0005 -1.0276 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5142 33 1 1.9544 2.1268 0.0010 34 1 4.5024 1.3091 -0.0011 35 1 7.8770 -1.6648 -0.5024 36 1 7.1068 -2.8802 0.5619 37 1 6.4260 -0.4506 3.5456 38 1 5.0361 0.7197 6.3430 39 1 5.4728 0.8668 0.9550 40 1 6.8014 0.8041 -0.2439 41 1 1.7994 -2.8716 1.0049 42 1 0.8224 -2.5304 -0.4434 43 1 2.5003 -3.0992 -0.6154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099207951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:23 Heat of formation + Delta-G solvation = -106.104243 kcal Electronic energy + Delta-G solvation = -31857.242261 eV Core-core repulsion = 27103.416100 eV Total energy + Delta-G solvation = -4753.826162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.90956 -47.42145 -47.32206 -41.31402 -39.41011 -37.40841 -34.10741 -33.02231 -32.08732 -31.43749 -30.53988 -27.72371 -27.19724 -26.33559 -25.02192 -24.30773 -22.53574 -21.10881 -20.39308 -19.93143 -18.93159 -18.31593 -18.00946 -17.87401 -16.77725 -16.59483 -16.12745 -15.56531 -15.07553 -14.91406 -14.69675 -14.33915 -14.22759 -13.82697 -13.76045 -13.67896 -13.61639 -13.44685 -13.42034 -13.30380 -13.19797 -13.10115 -12.91794 -12.77055 -12.22340 -12.03446 -11.85333 -11.83451 -11.71088 -11.56337 -10.97257 -10.91788 -10.88164 -10.61411 -10.17542 -9.84899 -9.78075 -9.16684 -8.60798 -8.48082 -7.82814 -7.14254 -5.88711 -3.20753 1.68627 2.56974 2.90150 2.95114 3.38304 3.40619 3.43924 3.45317 3.60786 3.98810 4.09410 4.21365 4.51001 4.70022 4.85186 4.86970 4.89219 5.06116 5.15435 5.25583 5.30287 5.36146 5.45338 5.48427 5.55512 5.58368 5.65126 5.70203 5.73351 5.81269 5.93571 6.05257 6.08668 6.22941 6.32985 6.39766 6.61553 7.02803 7.19702 7.38537 7.58949 7.70548 8.26087 8.33575 9.39258 9.88421 10.23574 11.32867 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.007720 B = 0.005274 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.919122 B = 5307.488967 C = 8092.749093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.037 3.963 3 C -0.204 4.204 4 C -0.135 4.135 5 C -0.045 4.045 6 C 0.616 3.384 7 O -0.563 6.563 8 N -0.599 5.599 9 C 0.122 3.878 10 C -0.166 4.166 11 H 0.129 0.871 12 C 0.465 3.535 13 F -0.172 7.172 14 F -0.187 7.187 15 F -0.183 7.183 16 C 0.179 3.821 17 H 0.077 0.923 18 N -0.708 5.708 19 C -0.251 4.251 20 H 0.075 0.925 21 C -0.003 4.003 22 N -0.926 5.926 23 Si 0.908 3.092 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.051 3.949 28 N -0.410 5.410 29 C 0.066 3.934 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.140 0.860 34 H 0.158 0.842 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.387 0.613 38 H 0.257 0.743 39 H 0.118 0.882 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.854 -3.269 -12.699 13.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.228 4.228 4 C -0.161 4.161 5 C -0.157 4.157 6 C 0.408 3.592 7 O -0.444 6.444 8 N -0.330 5.330 9 C -0.001 4.001 10 C -0.187 4.187 11 H 0.147 0.853 12 C 0.410 3.590 13 F -0.154 7.154 14 F -0.169 7.169 15 F -0.165 7.165 16 C 0.066 3.934 17 H 0.095 0.905 18 N -0.348 5.348 19 C -0.382 4.382 20 H 0.093 0.907 21 C -0.200 4.200 22 N -0.572 5.572 23 Si 0.738 3.262 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C -0.074 4.074 28 N -0.084 5.084 29 C -0.075 4.075 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.158 0.842 34 H 0.175 0.825 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.222 0.778 38 H 0.067 0.933 39 H 0.135 0.865 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.105 -4.138 -12.781 13.788 hybrid contribution 0.027 0.648 0.778 1.013 sum -3.078 -3.490 -12.003 12.873 Atomic orbital electron populations 1.20348 0.88046 1.03416 1.02421 1.20485 0.93551 0.85914 1.07994 1.20629 0.92616 0.97656 1.11913 1.21861 0.98185 0.92251 1.03756 1.19685 0.83804 0.93498 1.18725 1.16457 0.80792 0.85780 0.76204 1.90738 1.85313 1.16823 1.51554 1.48288 1.05685 1.11040 1.68005 1.22099 0.84266 0.97859 0.95916 1.23872 0.88199 1.03930 1.02746 0.85332 1.20279 0.91360 0.73345 0.74031 1.93235 1.85144 1.81297 1.55691 1.93169 1.88504 1.39462 1.95749 1.93154 1.95816 1.78422 1.49098 1.21046 0.93447 0.90708 0.88191 0.90522 1.42401 1.68810 1.06983 1.16655 1.19174 1.32840 0.84871 1.01276 0.90710 1.24752 1.00682 0.97143 0.97398 1.69659 1.44666 1.27070 1.15845 0.86192 0.78099 0.83527 0.78352 1.21495 1.21769 1.20528 1.24203 1.02577 0.82183 0.98454 1.43625 1.04514 1.06330 1.53942 1.22190 1.01154 0.80120 1.04036 0.91074 0.91790 0.89874 0.84172 0.82511 0.90156 0.88828 0.77847 0.93311 0.86465 0.91312 0.90857 0.90165 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 9.81 36.00 0.35 -0.46 16 2 C 0.04 0.52 6.87 -81.95 -0.56 -0.05 16 3 C -0.20 -3.03 10.71 -39.98 -0.43 -3.46 16 4 C -0.13 -2.20 9.17 -39.12 -0.36 -2.56 16 5 C -0.04 -0.78 6.80 -81.98 -0.56 -1.33 16 6 C 0.62 11.17 7.84 -12.85 -0.10 11.07 16 7 O -0.56 -10.96 15.12 5.19 0.08 -10.88 16 8 N -0.60 -9.89 3.32 -170.85 -0.57 -10.46 16 9 C 0.12 1.77 6.38 -2.41 -0.02 1.76 16 10 C -0.17 -2.56 2.84 -89.22 -0.25 -2.81 16 11 H 0.13 2.08 7.64 -51.93 -0.40 1.68 16 12 C 0.46 6.79 2.53 37.16 0.09 6.88 16 13 F -0.17 -2.86 16.93 2.25 0.04 -2.82 16 14 F -0.19 -2.62 17.17 2.25 0.04 -2.58 16 15 F -0.18 -2.55 16.05 2.25 0.04 -2.52 16 16 C 0.18 3.18 2.99 -66.53 -0.20 2.98 16 17 H 0.08 1.36 7.37 -51.93 -0.38 0.98 16 18 N -0.71 -16.15 5.14 -52.07 -0.27 -16.42 16 19 C -0.25 -6.40 9.97 -15.06 -0.15 -6.55 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 21 C 0.00 -0.07 5.50 -17.43 -0.10 -0.17 16 22 N -0.93 -26.74 13.06 55.49 0.72 -26.02 16 23 Si 0.91 21.41 29.55 -169.99 -5.02 16.38 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 C 0.05 0.82 5.63 -2.41 -0.01 0.81 16 28 N -0.41 -6.31 3.16 -115.62 -0.37 -6.67 16 29 C 0.07 0.83 10.30 59.85 0.62 1.44 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.56 7.54 -51.93 -0.39 0.16 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.14 1.77 8.06 -52.48 -0.42 1.35 16 34 H 0.16 2.39 5.10 -52.49 -0.27 2.13 16 35 H 0.08 1.03 7.21 -51.93 -0.37 0.66 16 36 H 0.09 1.35 7.90 -51.93 -0.41 0.94 16 37 H 0.39 9.67 7.50 -40.82 -0.31 9.36 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.12 2.09 4.45 -51.93 -0.23 1.86 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.08 0.73 7.33 -51.93 -0.38 0.35 16 43 H 0.10 1.37 6.43 -51.93 -0.33 1.04 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -31.03 363.37 -6.64 -37.67 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.13 Total: 11.29 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -1.67 Total: 7.55 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.47 Total: -59.57 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 0.11 Total: -7.93 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.03 -6.64 -37.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099207951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.432 kcal (2) G-P(sol) polarization free energy of solvation -31.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds