Wall clock time and date at job start Wed Apr 1 2020 02:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35449 * 125.56510 * 2 1 4 4 C 1.39841 * 107.86888 * 180.02562 * 3 2 1 5 5 C 1.37870 * 107.08122 * 0.02562 * 4 3 2 6 6 C 1.46681 * 126.23147 * 180.02562 * 5 4 3 7 7 O 1.21701 * 119.99655 * 195.19459 * 6 5 4 8 8 N 1.34778 * 119.99953 * 15.19673 * 6 5 4 9 9 C 1.48144 * 127.83561 * 177.84986 * 8 6 5 10 10 C 1.54385 * 104.61668 * 219.60414 * 9 8 6 11 11 H 1.09003 * 110.34015 * 95.00957 * 10 9 8 12 12 C 1.53001 * 110.34431 * 217.26080 * 10 9 8 13 13 F 1.39898 * 109.46953 * 175.53743 * 12 10 9 14 14 F 1.39898 * 109.47435 * 295.54091 * 12 10 9 15 15 F 1.39901 * 109.46727 * 55.54153 * 12 10 9 16 16 C 1.54279 * 104.96415 * 336.13905 * 10 9 8 17 17 H 1.08997 * 110.43077 * 241.08430 * 16 10 9 18 18 N 1.46495 * 110.34805 * 118.86854 * 16 10 9 19 19 C 1.36933 * 120.00325 * 158.01397 * 18 16 10 20 20 H 1.07999 * 120.00035 * 359.97438 * 19 18 16 21 21 C 1.38814 * 120.00133 * 180.02562 * 19 18 16 22 22 N 1.31612 * 119.99893 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00001 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47248 * 89.99785 * 23 21 19 25 25 H 1.48498 * 109.47274 * 209.99801 * 23 21 19 26 26 H 1.48502 * 109.47312 * 329.99818 * 23 21 19 27 27 C 1.48140 * 127.83593 * 357.87910 * 8 6 5 28 28 N 1.35539 * 125.56471 * 180.35080 * 2 1 3 29 29 C 1.46499 * 125.67979 * 0.02562 * 28 2 1 30 30 H 1.08998 * 109.47312 * 89.97328 * 1 2 3 31 31 H 1.09001 * 109.47424 * 209.97436 * 1 2 3 32 32 H 1.08996 * 109.47060 * 329.97580 * 1 2 3 33 33 H 1.08003 * 126.06848 * 0.06757 * 3 2 1 34 34 H 1.07996 * 126.45955 * 179.97438 * 4 3 2 35 35 H 1.08997 * 110.40760 * 100.82139 * 9 8 6 36 36 H 1.09001 * 110.51113 * 338.44257 * 9 8 6 37 37 H 0.97003 * 119.99756 * 338.01018 * 18 16 10 38 38 H 0.97001 * 119.99984 * 179.97438 * 22 21 19 39 39 H 1.08994 * 110.41230 * 21.60908 * 27 8 6 40 40 H 1.09000 * 110.40532 * 259.17082 * 27 8 6 41 41 H 1.09005 * 109.46831 * 264.55552 * 29 28 2 42 42 H 1.09001 * 109.47060 * 24.54866 * 29 28 2 43 43 H 1.08998 * 109.47545 * 144.55159 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6767 -0.0006 5 6 3.6122 -0.7019 -0.0015 6 6 4.7860 -1.5815 -0.0019 7 8 4.6630 -2.7601 -0.2790 8 7 6.0007 -1.0844 0.3047 9 6 7.2848 -1.8170 0.3999 10 6 7.9968 -1.1980 1.6219 11 1 7.8018 -1.7918 2.5150 12 6 9.5020 -1.0984 1.3664 13 9 10.1150 -0.4438 2.4401 14 9 10.0390 -2.3837 1.2358 15 9 9.7284 -0.3766 0.1895 16 6 7.3835 0.2099 1.7694 17 1 8.1535 0.9737 1.6607 18 7 6.7164 0.3415 3.0670 19 6 6.5027 1.5828 3.6043 20 1 6.8263 2.4648 3.0716 21 6 5.8711 1.7075 4.8341 22 7 5.4771 0.6326 5.4835 23 14 5.5802 3.4007 5.5673 24 1 4.2619 3.9152 5.1173 25 1 5.5957 3.3078 7.0493 26 1 6.6519 4.3254 5.1181 27 6 6.3544 0.3184 0.6235 28 7 2.2953 -1.1025 -0.0068 29 6 1.8242 -2.4897 -0.0158 30 1 -0.3634 0.0005 -1.0276 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3633 0.8897 0.5142 33 1 1.9544 2.1268 0.0010 34 1 4.5024 1.3091 -0.0011 35 1 7.8770 -1.6648 -0.5024 36 1 7.1068 -2.8802 0.5619 37 1 6.4260 -0.4506 3.5456 38 1 5.0361 0.7197 6.3430 39 1 5.4728 0.8668 0.9550 40 1 6.8014 0.8041 -0.2439 41 1 1.7994 -2.8716 1.0049 42 1 0.8224 -2.5304 -0.4434 43 1 2.5003 -3.0992 -0.6154 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099207951.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:22 Heat of formation + Delta-G solvation = -124.471197 kcal Electronic energy + Delta-G solvation = -31858.038712 eV Core-core repulsion = 27103.416100 eV Total energy + Delta-G solvation = -4754.622612 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -51.12428 -48.59657 -48.57522 -42.47199 -40.72459 -38.82135 -35.84392 -34.25960 -33.37068 -32.72162 -31.99988 -29.24955 -28.32373 -27.41461 -26.19474 -26.02914 -24.01016 -22.32590 -21.75223 -21.16620 -20.08719 -19.60079 -19.40418 -19.23331 -18.33804 -17.86696 -17.48392 -16.75059 -16.65193 -16.12310 -15.99712 -15.63218 -15.47635 -15.32646 -15.18394 -15.00769 -14.87672 -14.83934 -14.67663 -14.61627 -14.34668 -14.12836 -13.97716 -13.69529 -13.57724 -13.33527 -13.07359 -12.91680 -12.86280 -12.81764 -12.71424 -12.60487 -12.31357 -12.06128 -11.95927 -11.73669 -11.19787 -10.98227 -9.99805 -9.65110 -9.07512 -8.93235 -7.92815 -5.23107 0.45319 1.36501 1.52100 1.52220 1.60233 1.73238 1.77267 2.23257 2.31529 2.55661 2.76228 2.82276 2.97430 3.38984 3.46712 3.66223 3.77083 3.87796 3.92907 3.96295 3.99996 4.19970 4.27279 4.31802 4.46044 4.50147 4.52813 4.60178 4.70089 4.72083 4.77385 4.80225 4.94392 5.07121 5.10521 5.24392 5.31076 5.56574 5.89430 6.02545 6.25123 6.31564 6.38861 6.99420 7.34152 8.00544 8.25232 9.30021 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.007720 B = 0.005274 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.919122 B = 5307.488967 C = 8092.749093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.046 3.954 3 C -0.227 4.227 4 C -0.142 4.142 5 C -0.084 4.084 6 C 0.609 3.391 7 O -0.586 6.586 8 N -0.601 5.601 9 C 0.124 3.876 10 C -0.157 4.157 11 H 0.118 0.882 12 C 0.475 3.525 13 F -0.184 7.184 14 F -0.181 7.181 15 F -0.175 7.175 16 C 0.174 3.826 17 H 0.083 0.917 18 N -0.720 5.720 19 C -0.237 4.237 20 H 0.087 0.913 21 C -0.067 4.067 22 N -0.967 5.967 23 Si 0.966 3.034 24 H -0.288 1.288 25 H -0.303 1.303 26 H -0.266 1.266 27 C 0.060 3.940 28 N -0.418 5.418 29 C 0.065 3.935 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.373 0.627 38 H 0.249 0.751 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.118 0.882 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.359 -2.359 -14.283 14.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C -0.250 4.250 4 C -0.168 4.168 5 C -0.196 4.196 6 C 0.401 3.599 7 O -0.470 6.470 8 N -0.332 5.332 9 C 0.001 3.999 10 C -0.179 4.179 11 H 0.136 0.864 12 C 0.420 3.580 13 F -0.165 7.165 14 F -0.162 7.162 15 F -0.156 7.156 16 C 0.063 3.937 17 H 0.101 0.899 18 N -0.359 5.359 19 C -0.368 4.368 20 H 0.104 0.896 21 C -0.259 4.259 22 N -0.617 5.617 23 Si 0.796 3.204 24 H -0.215 1.215 25 H -0.230 1.230 26 H -0.190 1.190 27 C -0.064 4.064 28 N -0.093 5.093 29 C -0.076 4.076 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.177 0.823 34 H 0.178 0.822 35 H 0.122 0.878 36 H 0.112 0.888 37 H 0.205 0.795 38 H 0.057 0.943 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.136 0.864 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.562 -3.209 -14.423 15.199 hybrid contribution 0.199 0.352 1.175 1.243 sum -3.362 -2.858 -13.248 13.963 Atomic orbital electron populations 1.20522 0.84744 1.04613 1.04238 1.21244 0.95554 0.85169 1.05218 1.20989 0.92243 0.99061 1.12757 1.22078 0.99242 0.92141 1.03345 1.19793 0.84588 0.93929 1.21310 1.16701 0.81405 0.85704 0.76049 1.90709 1.85691 1.17663 1.52896 1.48331 1.05938 1.11333 1.67562 1.22219 0.83641 0.97672 0.96324 1.23692 0.88930 1.02307 1.02934 0.86364 1.20001 0.90544 0.73521 0.73949 1.93218 1.85277 1.81596 1.56443 1.93186 1.88316 1.39005 1.95692 1.93174 1.95719 1.78256 1.48462 1.21228 0.93628 0.92273 0.86529 0.89886 1.42520 1.69356 1.05627 1.18408 1.19580 1.30358 0.86166 1.00689 0.89553 1.25471 1.01979 0.99999 0.98469 1.69816 1.46862 1.28943 1.16057 0.85248 0.78152 0.80262 0.76753 1.21504 1.23002 1.19016 1.24050 1.01364 0.82200 0.98797 1.43922 1.04134 1.07586 1.53637 1.22306 1.02688 0.78759 1.03814 0.88783 0.90611 0.88676 0.82322 0.82178 0.87752 0.88792 0.79505 0.94268 0.88024 0.88017 0.91298 0.86403 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 9.81 71.23 0.70 -0.65 16 2 C 0.05 1.19 6.87 41.34 0.28 1.48 16 3 C -0.23 -6.48 10.71 22.01 0.24 -6.24 16 4 C -0.14 -4.59 9.17 22.57 0.21 -4.38 16 5 C -0.08 -2.93 6.80 40.35 0.27 -2.65 16 6 C 0.61 22.19 7.84 86.45 0.68 22.87 16 7 O -0.59 -23.12 15.12 -4.35 -0.07 -23.19 16 8 N -0.60 -19.49 3.32 -812.65 -2.69 -22.18 16 9 C 0.12 3.46 6.38 86.53 0.55 4.01 16 10 C -0.16 -4.70 2.84 -9.89 -0.03 -4.73 16 11 H 0.12 3.85 7.64 -2.39 -0.02 3.83 16 12 C 0.47 13.09 2.53 71.98 0.18 13.27 16 13 F -0.18 -5.89 16.93 44.97 0.76 -5.13 16 14 F -0.18 -4.75 17.17 44.97 0.77 -3.97 16 15 F -0.17 -4.43 16.05 44.97 0.72 -3.70 16 16 C 0.17 6.02 2.99 45.90 0.14 6.16 16 17 H 0.08 2.80 7.37 -2.39 -0.02 2.78 16 18 N -0.72 -32.96 5.14 -318.66 -1.64 -34.60 16 19 C -0.24 -11.99 9.97 84.03 0.84 -11.15 16 20 H 0.09 4.10 7.83 -2.91 -0.02 4.07 16 21 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 22 N -0.97 -57.23 13.06 21.65 0.28 -56.94 16 23 Si 0.97 44.22 29.55 68.60 2.03 46.24 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 C 0.06 1.88 5.63 86.54 0.49 2.37 16 28 N -0.42 -12.58 3.16 -519.70 -1.64 -14.22 16 29 C 0.06 1.56 10.30 127.77 1.32 2.88 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.08 1.06 7.54 -2.39 -0.02 1.05 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.16 3.75 8.06 -2.91 -0.02 3.72 16 34 H 0.16 4.83 5.10 -2.91 -0.01 4.82 16 35 H 0.10 2.43 7.21 -2.39 -0.02 2.41 16 36 H 0.09 2.65 7.90 -2.39 -0.02 2.63 16 37 H 0.37 19.09 7.50 -92.71 -0.70 18.39 16 38 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 39 H 0.10 3.57 4.45 -2.39 -0.01 3.56 16 40 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 42 H 0.12 1.86 7.33 -2.39 -0.02 1.84 16 43 H 0.09 2.35 6.43 -2.39 -0.02 2.33 16 Total: -1.00 -67.65 363.37 5.23 -62.42 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: 0.38 Total: 35.20 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: 6.33 Total: 20.08 kcal Atomic # 7 Polarization: -122.25 SS G_CDS: -5.69 Total: -127.95 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.07 Total: -23.19 kcal Atomic # 9 Polarization: -15.06 SS G_CDS: 2.25 Total: -12.81 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -67.65 5.23 -62.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099207951.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.054 kcal (2) G-P(sol) polarization free energy of solvation -67.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds