Wall clock time and date at job start Wed Apr 1 2020 02:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36772 * 125.79917 * 2 1 4 4 C 1.47261 * 126.94309 * 359.97438 * 3 2 1 5 5 O 1.21626 * 119.99779 * 352.01742 * 4 3 2 6 6 N 1.34776 * 119.99904 * 172.02591 * 4 3 2 7 7 C 1.48141 * 127.84147 * 353.57208 * 6 4 3 8 8 C 1.54388 * 104.61984 * 219.60802 * 7 6 4 9 9 H 1.09003 * 110.33972 * 95.10614 * 8 7 6 10 10 C 1.53000 * 110.34226 * 217.26394 * 8 7 6 11 11 F 1.39896 * 109.47317 * 57.12372 * 10 8 7 12 12 F 1.39902 * 109.46743 * 297.12041 * 10 8 7 13 13 F 1.39894 * 109.46815 * 177.12702 * 10 8 7 14 14 C 1.54288 * 105.05148 * 336.18531 * 8 7 6 15 15 H 1.08994 * 110.34274 * 241.07692 * 14 8 7 16 16 N 1.46498 * 110.33899 * 118.81407 * 14 8 7 17 17 C 1.36940 * 119.99532 * 154.99761 * 16 14 8 18 18 H 1.08004 * 120.00104 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00009 * 179.97438 * 17 16 14 20 20 N 1.31616 * 119.99929 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99871 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47312 * 60.00345 * 21 19 17 23 23 H 1.48506 * 109.47005 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47149 * 300.00271 * 21 19 17 25 25 C 1.48141 * 127.83338 * 173.59851 * 6 4 3 26 26 C 1.46697 * 106.11395 * 179.71973 * 3 2 1 27 27 C 1.34485 * 106.33086 * 0.26603 * 26 3 2 28 28 N 1.34659 * 125.80522 * 180.17589 * 2 1 3 29 29 C 1.46504 * 124.85130 * 0.02562 * 28 2 1 30 30 H 1.08997 * 109.47277 * 90.00083 * 1 2 3 31 31 H 1.08999 * 109.46735 * 209.99451 * 1 2 3 32 32 H 1.08996 * 109.47336 * 329.98909 * 1 2 3 33 33 H 1.09004 * 110.40635 * 100.82071 * 7 6 4 34 34 H 1.09004 * 110.50542 * 338.44748 * 7 6 4 35 35 H 0.96991 * 120.00393 * 335.00572 * 16 14 8 36 36 H 0.96997 * 119.99942 * 179.97438 * 20 19 17 37 37 H 1.09002 * 110.41100 * 259.17394 * 25 6 4 38 38 H 1.08997 * 110.41084 * 21.49256 * 25 6 4 39 39 H 1.07996 * 126.82767 * 180.29659 * 26 3 2 40 40 H 1.08005 * 125.56775 * 180.02562 * 27 26 3 41 41 H 1.09002 * 109.47039 * 270.31591 * 29 28 2 42 42 H 1.08998 * 109.47119 * 30.31286 * 29 28 2 43 43 H 1.09003 * 109.47432 * 150.31035 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6936 2.7868 -0.1473 6 7 2.7741 3.5021 0.1615 7 6 4.2146 3.3713 0.4815 8 6 4.4980 4.5164 1.4775 9 1 4.4261 4.1533 2.5028 10 6 5.8833 5.1133 1.2215 11 9 5.9617 5.5588 -0.1023 12 9 6.8601 4.1367 1.4436 13 9 6.0947 6.1901 2.0892 14 6 3.4021 5.5671 1.2025 15 1 3.8507 6.5083 0.8850 16 7 2.5805 5.7708 2.3982 17 6 1.9161 6.9545 2.5788 18 1 1.9976 7.7377 1.8396 19 6 1.1371 7.1474 3.7114 20 7 1.0375 6.1928 4.6120 21 14 0.2303 8.7620 3.9574 22 1 -0.7143 8.9756 2.8317 23 1 -0.5244 8.7161 5.2356 24 1 1.2092 9.8779 4.0008 25 6 2.5523 4.9633 0.0603 26 6 3.6883 0.6152 0.0069 27 6 3.6096 -0.7274 0.0044 28 7 2.2948 -1.0921 -0.0034 29 6 1.8095 -2.4744 -0.0081 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8898 0.5140 33 1 4.8166 3.4930 -0.4190 34 1 4.4165 2.4056 0.9451 35 1 2.5071 5.0673 3.0619 36 1 0.4934 6.3277 5.4036 37 1 2.8947 5.3338 -0.9059 38 1 1.4979 5.1987 0.2048 39 1 4.5889 1.2111 0.0132 40 1 4.4499 -1.4059 0.0084 41 1 1.6835 -2.8188 1.0183 42 1 0.8523 -2.5217 -0.5273 43 1 2.5317 -3.1113 -0.5190 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099301477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:26 Heat of formation + Delta-G solvation = -106.931315 kcal Electronic energy + Delta-G solvation = -31589.507102 eV Core-core repulsion = 26835.645076 eV Total energy + Delta-G solvation = -4753.862026 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.85837 -47.37474 -47.26727 -41.40729 -39.29901 -37.21779 -34.09112 -32.95777 -31.78505 -31.53718 -30.42382 -28.14571 -26.51982 -26.40026 -25.40051 -24.11145 -22.55119 -21.29745 -20.54933 -19.83121 -18.51831 -18.19289 -17.92457 -17.72571 -16.94301 -16.57500 -15.98110 -15.72195 -15.17726 -14.92639 -14.66108 -14.32017 -14.20072 -13.96872 -13.76529 -13.65099 -13.50668 -13.44138 -13.32954 -13.30962 -13.13087 -13.02335 -12.87410 -12.71686 -12.56337 -12.11191 -11.80932 -11.69978 -11.58559 -11.41440 -11.15319 -10.80003 -10.76384 -10.62194 -10.12732 -9.74895 -9.47232 -9.06158 -8.65312 -8.39594 -8.09277 -7.03685 -5.79783 -3.11039 1.85657 2.39443 2.67917 2.94044 3.43454 3.45878 3.50084 3.50813 3.79961 4.06060 4.18759 4.28545 4.48041 4.59264 4.69526 4.82214 4.83560 4.91751 4.94603 5.07183 5.17401 5.30660 5.34032 5.43326 5.52509 5.60685 5.64147 5.69143 5.73076 5.85920 5.93591 6.12153 6.16538 6.20611 6.32028 6.62824 6.75234 6.78839 7.03653 7.16573 7.67364 8.00229 8.35781 8.68385 9.48472 9.98517 10.33850 11.42038 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.009500 B = 0.004136 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.652722 B = 6767.412294 C = 8914.805704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.103 3.897 3 C -0.226 4.226 4 C 0.612 3.388 5 O -0.543 6.543 6 N -0.607 5.607 7 C 0.104 3.896 8 C -0.167 4.167 9 H 0.128 0.872 10 C 0.463 3.537 11 F -0.184 7.184 12 F -0.189 7.189 13 F -0.173 7.173 14 C 0.179 3.821 15 H 0.076 0.924 16 N -0.708 5.708 17 C -0.250 4.250 18 H 0.073 0.927 19 C -0.005 4.005 20 N -0.928 5.928 21 Si 0.909 3.091 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.080 3.920 26 C -0.177 4.177 27 C -0.021 4.021 28 N -0.448 5.448 29 C 0.069 3.931 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.387 0.613 36 H 0.257 0.743 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.154 0.846 40 H 0.166 0.834 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.262 -16.833 -10.513 21.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.014 4.014 3 C -0.235 4.235 4 C 0.403 3.597 5 O -0.422 6.422 6 N -0.340 5.340 7 C -0.020 4.020 8 C -0.189 4.189 9 H 0.146 0.854 10 C 0.409 3.591 11 F -0.165 7.165 12 F -0.170 7.170 13 F -0.155 7.155 14 C 0.066 3.934 15 H 0.094 0.906 16 N -0.348 5.348 17 C -0.380 4.380 18 H 0.091 0.909 19 C -0.201 4.201 20 N -0.575 5.575 21 Si 0.740 3.260 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.211 1.211 25 C -0.045 4.045 26 C -0.200 4.200 27 C -0.146 4.146 28 N -0.125 5.125 29 C -0.073 4.073 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.120 0.880 35 H 0.222 0.778 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.171 0.829 40 H 0.183 0.817 41 H 0.092 0.908 42 H 0.103 0.897 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.386 -16.925 -10.577 21.281 hybrid contribution -0.009 0.607 0.460 0.761 sum 7.377 -16.318 -10.117 20.569 Atomic orbital electron populations 1.20530 0.87093 1.04058 1.03218 1.20291 0.93745 0.85074 1.02263 1.20120 0.93172 0.91881 1.18365 1.16843 0.84036 0.83002 0.75777 1.90755 1.16304 1.83774 1.51382 1.48448 1.08264 1.07027 1.70229 1.22590 0.83685 0.98407 0.97332 1.23943 0.90836 0.99530 1.04572 0.85438 1.20350 0.88319 0.76543 0.73923 1.93152 1.96879 1.89936 1.36557 1.93156 1.66458 1.62907 1.94521 1.93231 1.95663 1.56889 1.69681 1.21086 0.88947 0.94029 0.89305 0.90634 1.42366 1.54901 1.17492 1.20008 1.19166 1.22260 0.92420 1.04179 0.90855 1.24750 1.00376 0.98003 0.97019 1.69652 1.43714 1.32597 1.11501 0.86245 0.79579 0.83107 0.77092 1.21066 1.21685 1.21112 1.23510 1.04139 0.78311 0.98553 1.22422 0.96190 0.93511 1.07908 1.21695 0.85327 0.96242 1.11384 1.43534 1.06043 1.05999 1.56904 1.22065 1.01602 0.80188 1.03443 0.90573 0.92110 0.88050 0.90536 0.88035 0.77842 0.93312 0.92069 0.88419 0.82911 0.81703 0.90757 0.89730 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 9.18 36.01 0.33 -0.78 16 2 C 0.10 1.38 6.89 -81.88 -0.56 0.81 16 3 C -0.23 -3.49 6.20 -103.35 -0.64 -4.13 16 4 C 0.61 11.45 7.88 -12.59 -0.10 11.35 16 5 O -0.54 -11.90 15.18 5.25 0.08 -11.82 16 6 N -0.61 -10.52 3.32 -170.48 -0.57 -11.09 16 7 C 0.10 1.44 5.04 -2.41 -0.01 1.43 16 8 C -0.17 -2.62 2.83 -89.22 -0.25 -2.88 16 9 H 0.13 2.08 7.67 -51.93 -0.40 1.68 16 10 C 0.46 6.83 2.52 37.16 0.09 6.92 16 11 F -0.18 -2.62 16.05 2.25 0.04 -2.59 16 12 F -0.19 -2.54 17.14 2.25 0.04 -2.50 16 13 F -0.17 -2.95 16.99 2.25 0.04 -2.91 16 14 C 0.18 3.44 3.02 -66.40 -0.20 3.24 16 15 H 0.08 1.45 7.34 -51.93 -0.38 1.07 16 16 N -0.71 -17.30 5.12 -51.94 -0.27 -17.56 16 17 C -0.25 -6.81 9.96 -15.06 -0.15 -6.96 16 18 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 19 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 20 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 21 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 22 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 C 0.08 1.49 6.80 -2.28 -0.02 1.48 16 26 C -0.18 -2.16 9.33 -37.49 -0.35 -2.51 16 27 C -0.02 -0.21 11.34 -16.82 -0.19 -0.40 16 28 N -0.45 -4.62 3.09 -119.88 -0.37 -4.99 16 29 C 0.07 0.40 10.60 59.85 0.63 1.03 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.56 7.59 -51.93 -0.39 0.16 16 32 H 0.10 1.53 6.66 -51.93 -0.35 1.19 16 33 H 0.08 0.93 7.27 -51.93 -0.38 0.55 16 34 H 0.10 1.25 4.87 -51.93 -0.25 1.00 16 35 H 0.39 10.18 7.55 -40.82 -0.31 9.88 16 36 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 2.17 7.76 -51.93 -0.40 1.77 16 39 H 0.15 1.60 5.35 -52.49 -0.28 1.32 16 40 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.41 7.51 -51.93 -0.39 0.02 16 43 H 0.08 0.32 8.13 -51.93 -0.42 -0.11 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -33.84 364.25 -6.52 -40.36 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.19 Total: 8.98 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -1.51 Total: 8.39 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.48 Total: -60.81 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 0.11 Total: -8.00 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.84 -6.52 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099301477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.569 kcal (2) G-P(sol) polarization free energy of solvation -33.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds