Wall clock time and date at job start Wed Apr 1 2020 03:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34481 * 125.57176 * 2 1 4 4 C 1.46693 * 106.32954 * 179.75588 * 3 2 1 5 5 C 1.47260 * 126.94260 * 180.23762 * 4 3 2 6 6 O 1.21620 * 120.00382 * 169.43819 * 5 4 3 7 7 N 1.34780 * 119.99950 * 349.43683 * 5 4 3 8 8 C 1.48142 * 127.83905 * 359.93128 * 7 5 4 9 9 C 1.54391 * 104.61881 * 219.58697 * 8 7 5 10 10 H 1.08999 * 110.34377 * 95.00422 * 9 8 7 11 11 C 1.53002 * 110.34160 * 217.15349 * 9 8 7 12 12 F 1.39910 * 109.46944 * 58.54696 * 11 9 8 13 13 F 1.39899 * 109.47003 * 178.54244 * 11 9 8 14 14 F 1.39896 * 109.47434 * 298.54783 * 11 9 8 15 15 C 1.54279 * 104.95810 * 336.12981 * 9 8 7 16 16 H 1.09003 * 110.34541 * 241.13204 * 15 9 8 17 17 N 1.46502 * 110.34107 * 118.87159 * 15 9 8 18 18 C 1.36937 * 119.99765 * 155.00092 * 17 15 9 19 19 H 1.08002 * 120.00468 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99851 * 179.97438 * 18 17 15 21 21 N 1.31627 * 120.00017 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00097 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47300 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47307 * 120.00268 * 22 20 18 25 25 H 1.48501 * 109.47040 * 240.00016 * 22 20 18 26 26 C 1.48145 * 127.84046 * 179.61148 * 7 5 4 27 27 C 1.36764 * 106.11736 * 0.35942 * 4 3 2 28 28 C 1.50696 * 125.80612 * 179.90264 * 27 4 3 29 29 N 1.34663 * 108.39592 * 359.63822 * 27 4 3 30 30 H 0.97004 * 124.85004 * 180.26223 * 29 27 4 31 31 H 1.09003 * 109.47414 * 270.00173 * 1 2 3 32 32 H 1.08999 * 109.46821 * 30.00279 * 1 2 3 33 33 H 1.08994 * 109.47267 * 150.00454 * 1 2 3 34 34 H 1.08002 * 126.83587 * 359.97438 * 3 2 1 35 35 H 1.09001 * 110.40793 * 338.36959 * 8 7 5 36 36 H 1.09004 * 110.40935 * 100.68337 * 8 7 5 37 37 H 0.96998 * 119.99848 * 334.99857 * 17 15 9 38 38 H 0.97001 * 119.99590 * 179.97438 * 21 20 18 39 39 H 1.09005 * 110.40853 * 259.20551 * 26 7 5 40 40 H 1.09004 * 110.40458 * 21.62516 * 26 7 5 41 41 H 1.09006 * 109.47064 * 269.71931 * 28 27 4 42 42 H 1.08999 * 109.47664 * 149.71845 * 28 27 4 43 43 H 1.09002 * 109.46952 * 29.70917 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6743 0.6104 0.0060 5 6 4.8978 1.4299 0.0131 6 8 5.9783 0.9079 0.2106 7 7 4.8201 2.7586 -0.1994 8 6 3.6066 3.5684 -0.4570 9 6 4.0387 4.5861 -1.5345 10 1 3.7821 4.2182 -2.5279 11 6 3.3751 5.9415 -1.2825 12 9 3.7290 6.4047 -0.0106 13 9 3.8045 6.8577 -2.2486 14 9 1.9852 5.8015 -1.3577 15 6 5.5699 4.6998 -1.3836 16 1 5.8508 5.7217 -1.1289 17 7 6.2359 4.2803 -2.6193 18 6 7.4855 4.7539 -2.9183 19 1 7.9802 5.4364 -2.2432 20 6 8.1167 4.3560 -4.0888 21 7 7.5144 3.5231 -4.9110 22 14 9.8216 5.0016 -4.4965 23 1 10.2757 5.9159 -3.4181 24 1 10.7677 3.8628 -4.6117 25 1 9.7764 5.7398 -5.7843 26 6 5.9281 3.7417 -0.2218 27 6 3.5998 -0.7552 0.0009 28 6 4.7721 -1.7021 0.0020 29 7 2.3007 -1.1099 0.0005 30 1 1.9757 -2.0239 0.0010 31 1 -0.3634 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5137 34 1 1.9629 2.1234 -0.0004 35 1 2.8009 2.9371 -0.8318 36 1 3.2935 4.0835 0.4512 37 1 5.7917 3.6670 -3.2254 38 1 7.9554 3.2453 -5.7291 39 1 5.9734 4.2851 0.7220 40 1 6.8762 3.2413 -0.4190 41 1 5.0555 -1.9307 -1.0254 42 1 4.4952 -2.6226 0.5159 43 1 5.6136 -1.2378 0.5162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099312803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:21 Heat of formation + Delta-G solvation = -118.857423 kcal Electronic energy + Delta-G solvation = -31649.189127 eV Core-core repulsion = 26894.809946 eV Total energy + Delta-G solvation = -4754.379181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.86679 -47.38433 -47.27605 -41.39484 -39.29114 -37.23965 -34.08568 -32.71850 -32.00424 -31.04704 -30.38242 -29.26161 -27.56831 -25.97517 -24.75684 -24.00952 -22.47489 -21.55830 -20.64979 -20.03398 -18.63402 -18.19886 -17.92811 -17.62887 -16.97441 -16.59185 -15.91558 -15.25790 -15.10561 -14.90320 -14.54459 -14.31550 -14.21521 -14.01794 -13.77396 -13.59686 -13.54287 -13.45344 -13.40402 -13.32612 -13.22648 -13.00316 -12.90264 -12.74640 -12.40812 -12.16928 -11.75321 -11.69352 -11.58084 -11.41448 -11.17353 -10.84224 -10.76945 -10.59826 -10.07078 -9.77106 -9.48213 -9.08593 -8.84918 -8.38529 -7.99837 -7.05207 -5.81645 -3.12823 1.86003 2.31695 2.89464 3.01859 3.43235 3.43793 3.49589 3.51600 3.78449 4.04508 4.16211 4.27851 4.57792 4.64842 4.81486 4.88963 4.90819 4.98586 5.20006 5.27396 5.28868 5.31903 5.36238 5.50525 5.61129 5.62109 5.64247 5.69991 5.72126 5.78821 5.95347 6.10550 6.15638 6.23722 6.30813 6.60063 6.74449 6.77964 6.95004 7.37759 7.67106 7.98141 8.33939 8.66191 9.46885 9.96801 10.32107 11.40308 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.009347 B = 0.004291 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.890567 B = 6523.000411 C = 8574.935454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.008 3.992 3 C -0.177 4.177 4 C -0.222 4.222 5 C 0.612 3.388 6 O -0.545 6.545 7 N -0.605 5.605 8 C 0.099 3.901 9 C -0.167 4.167 10 H 0.128 0.872 11 C 0.463 3.537 12 F -0.184 7.184 13 F -0.174 7.174 14 F -0.189 7.189 15 C 0.179 3.821 16 H 0.076 0.924 17 N -0.708 5.708 18 C -0.248 4.248 19 H 0.075 0.925 20 C -0.005 4.005 21 N -0.927 5.927 22 Si 0.909 3.091 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.080 3.920 27 C 0.105 3.895 28 C -0.098 4.098 29 N -0.551 5.551 30 H 0.412 0.588 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.155 0.845 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.387 0.613 38 H 0.256 0.744 39 H 0.062 0.938 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.690 -5.991 11.314 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.101 4.101 3 C -0.200 4.200 4 C -0.232 4.232 5 C 0.404 3.596 6 O -0.424 6.424 7 N -0.338 5.338 8 C -0.025 4.025 9 C -0.188 4.188 10 H 0.146 0.854 11 C 0.409 3.591 12 F -0.165 7.165 13 F -0.155 7.155 14 F -0.170 7.170 15 C 0.066 3.934 16 H 0.094 0.906 17 N -0.348 5.348 18 C -0.379 4.379 19 H 0.093 0.907 20 C -0.202 4.202 21 N -0.575 5.575 22 Si 0.740 3.260 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.045 4.045 27 C -0.012 4.012 28 C -0.155 4.155 29 N -0.147 5.147 30 H 0.248 0.752 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.172 0.828 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.222 0.778 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.989 -6.370 11.399 20.643 hybrid contribution 0.360 0.018 -0.573 0.676 sum -15.629 -6.352 10.826 20.045 Atomic orbital electron populations 1.20318 0.87817 1.03363 1.02591 1.20232 0.93409 0.86037 1.10431 1.22254 0.91026 0.97946 1.08815 1.20080 0.92880 0.92154 1.18083 1.16844 0.87514 0.79467 0.75790 1.90733 1.29575 1.70986 1.51150 1.48477 1.08778 1.05814 1.70710 1.22703 0.90061 0.92813 0.96934 1.23923 1.00644 0.90199 1.04041 0.85431 1.20353 0.76318 0.88501 0.73965 1.93158 1.91707 1.90496 1.41151 1.93232 1.89462 1.69389 1.63395 1.93153 1.31736 1.96072 1.96077 1.21113 0.86027 0.97340 0.88909 0.90638 1.42384 1.17977 1.54925 1.19493 1.19261 0.92471 1.22440 1.03705 0.90726 1.24757 0.98755 0.99500 0.97202 1.69679 1.38123 1.36756 1.12900 0.86099 0.84021 0.78002 0.77921 1.20358 1.21768 1.21808 1.23555 0.92135 0.90244 0.98565 1.20266 0.84762 0.94220 1.01961 1.20617 0.94905 0.96329 1.03654 1.41512 1.05337 1.08640 1.59258 0.75156 0.91097 0.89920 0.91865 0.82798 0.87675 0.90520 0.77846 0.93410 0.92020 0.88439 0.90377 0.92030 0.87639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.41 36.01 0.37 -0.16 16 2 C 0.01 0.08 7.13 -81.87 -0.58 -0.50 16 3 C -0.18 -2.17 9.24 -37.50 -0.35 -2.52 16 4 C -0.22 -3.40 6.20 -103.35 -0.64 -4.04 16 5 C 0.61 11.36 7.89 -12.59 -0.10 11.26 16 6 O -0.55 -11.76 15.07 5.26 0.08 -11.68 16 7 N -0.61 -10.41 3.31 -170.38 -0.56 -10.98 16 8 C 0.10 1.36 5.28 -2.41 -0.01 1.35 16 9 C -0.17 -2.59 2.83 -89.22 -0.25 -2.84 16 10 H 0.13 2.06 7.67 -51.93 -0.40 1.66 16 11 C 0.46 6.77 2.51 37.16 0.09 6.86 16 12 F -0.18 -2.61 16.05 2.25 0.04 -2.58 16 13 F -0.17 -2.92 17.07 2.25 0.04 -2.89 16 14 F -0.19 -2.51 17.11 2.25 0.04 -2.47 16 15 C 0.18 3.42 3.02 -66.32 -0.20 3.22 16 16 H 0.08 1.44 7.35 -51.93 -0.38 1.06 16 17 N -0.71 -17.18 5.13 -51.86 -0.27 -17.44 16 18 C -0.25 -6.73 9.96 -15.06 -0.15 -6.88 16 19 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 20 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 21 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 22 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 C 0.08 1.49 6.79 -2.20 -0.01 1.47 16 27 C 0.11 1.37 7.17 -81.89 -0.59 0.78 16 28 C -0.10 -1.15 10.01 36.00 0.36 -0.79 16 29 N -0.55 -5.38 5.90 -5.42 -0.03 -5.41 16 30 H 0.41 2.60 8.96 -40.82 -0.37 2.23 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.15 1.64 5.25 -52.49 -0.28 1.36 16 35 H 0.11 1.29 4.39 -51.93 -0.23 1.06 16 36 H 0.08 0.93 7.33 -51.93 -0.38 0.54 16 37 H 0.39 10.11 7.55 -40.82 -0.31 9.80 16 38 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.10 2.15 7.80 -51.93 -0.41 1.74 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.11 1.51 6.30 -51.93 -0.33 1.18 16 LS Contribution 365.12 15.07 5.50 5.50 Total: -1.00 -33.39 365.12 -6.77 -40.16 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.15 Total: 10.55 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -2.16 Total: 6.96 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: -0.14 Total: -60.88 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.08 Total: -11.68 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 0.11 Total: -7.93 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.39 -6.77 -40.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099312803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.697 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds