Wall clock time and date at job start Wed Apr 1 2020 03:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34481 * 125.57176 * 2 1 4 4 C 1.46693 * 106.32954 * 179.75588 * 3 2 1 5 5 C 1.47260 * 126.94260 * 180.23762 * 4 3 2 6 6 O 1.21620 * 120.00382 * 169.43819 * 5 4 3 7 7 N 1.34780 * 119.99950 * 349.43683 * 5 4 3 8 8 C 1.48142 * 127.83905 * 359.93128 * 7 5 4 9 9 C 1.54391 * 104.61881 * 219.58697 * 8 7 5 10 10 H 1.08999 * 110.34377 * 95.00422 * 9 8 7 11 11 C 1.53002 * 110.34160 * 217.15349 * 9 8 7 12 12 F 1.39910 * 109.46944 * 58.54696 * 11 9 8 13 13 F 1.39899 * 109.47003 * 178.54244 * 11 9 8 14 14 F 1.39896 * 109.47434 * 298.54783 * 11 9 8 15 15 C 1.54279 * 104.95810 * 336.12981 * 9 8 7 16 16 H 1.09003 * 110.34541 * 241.13204 * 15 9 8 17 17 N 1.46502 * 110.34107 * 118.87159 * 15 9 8 18 18 C 1.36937 * 119.99765 * 155.00092 * 17 15 9 19 19 H 1.08002 * 120.00468 * 0.02562 * 18 17 15 20 20 C 1.38813 * 119.99851 * 179.97438 * 18 17 15 21 21 N 1.31627 * 120.00017 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00097 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47300 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47307 * 120.00268 * 22 20 18 25 25 H 1.48501 * 109.47040 * 240.00016 * 22 20 18 26 26 C 1.48145 * 127.84046 * 179.61148 * 7 5 4 27 27 C 1.36764 * 106.11736 * 0.35942 * 4 3 2 28 28 C 1.50696 * 125.80612 * 179.90264 * 27 4 3 29 29 N 1.34663 * 108.39592 * 359.63822 * 27 4 3 30 30 H 0.97004 * 124.85004 * 180.26223 * 29 27 4 31 31 H 1.09003 * 109.47414 * 270.00173 * 1 2 3 32 32 H 1.08999 * 109.46821 * 30.00279 * 1 2 3 33 33 H 1.08994 * 109.47267 * 150.00454 * 1 2 3 34 34 H 1.08002 * 126.83587 * 359.97438 * 3 2 1 35 35 H 1.09001 * 110.40793 * 338.36959 * 8 7 5 36 36 H 1.09004 * 110.40935 * 100.68337 * 8 7 5 37 37 H 0.96998 * 119.99848 * 334.99857 * 17 15 9 38 38 H 0.97001 * 119.99590 * 179.97438 * 21 20 18 39 39 H 1.09005 * 110.40853 * 259.20551 * 26 7 5 40 40 H 1.09004 * 110.40458 * 21.62516 * 26 7 5 41 41 H 1.09006 * 109.47064 * 269.71931 * 28 27 4 42 42 H 1.08999 * 109.47664 * 149.71845 * 28 27 4 43 43 H 1.09002 * 109.46952 * 29.70917 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6743 0.6104 0.0060 5 6 4.8978 1.4299 0.0131 6 8 5.9783 0.9079 0.2106 7 7 4.8201 2.7586 -0.1994 8 6 3.6066 3.5684 -0.4570 9 6 4.0387 4.5861 -1.5345 10 1 3.7821 4.2182 -2.5279 11 6 3.3751 5.9415 -1.2825 12 9 3.7290 6.4047 -0.0106 13 9 3.8045 6.8577 -2.2486 14 9 1.9852 5.8015 -1.3577 15 6 5.5699 4.6998 -1.3836 16 1 5.8508 5.7217 -1.1289 17 7 6.2359 4.2803 -2.6193 18 6 7.4855 4.7539 -2.9183 19 1 7.9802 5.4364 -2.2432 20 6 8.1167 4.3560 -4.0888 21 7 7.5144 3.5231 -4.9110 22 14 9.8216 5.0016 -4.4965 23 1 10.2757 5.9159 -3.4181 24 1 10.7677 3.8628 -4.6117 25 1 9.7764 5.7398 -5.7843 26 6 5.9281 3.7417 -0.2218 27 6 3.5998 -0.7552 0.0009 28 6 4.7721 -1.7021 0.0020 29 7 2.3007 -1.1099 0.0005 30 1 1.9757 -2.0239 0.0010 31 1 -0.3634 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5139 33 1 -0.3633 -0.8900 -0.5137 34 1 1.9629 2.1234 -0.0004 35 1 2.8009 2.9371 -0.8318 36 1 3.2935 4.0835 0.4512 37 1 5.7917 3.6670 -3.2254 38 1 7.9554 3.2453 -5.7291 39 1 5.9734 4.2851 0.7220 40 1 6.8762 3.2413 -0.4190 41 1 5.0555 -1.9307 -1.0254 42 1 4.4952 -2.6226 0.5159 43 1 5.6136 -1.2378 0.5162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099312803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:20 Heat of formation + Delta-G solvation = -141.098019 kcal Electronic energy + Delta-G solvation = -31650.153552 eV Core-core repulsion = 26894.809946 eV Total energy + Delta-G solvation = -4755.343606 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -51.07250 -48.53529 -48.53296 -42.33415 -40.65205 -38.71503 -35.91667 -33.69543 -33.45618 -32.15251 -32.05175 -30.02734 -29.12470 -27.17377 -26.23291 -25.37921 -23.90950 -22.73010 -21.69871 -21.34995 -19.97341 -19.43400 -19.39211 -18.98900 -18.24504 -17.96196 -17.12320 -16.67590 -16.39159 -16.27787 -15.81307 -15.60439 -15.43162 -15.24283 -15.19644 -15.06337 -14.94187 -14.67831 -14.66812 -14.43044 -14.27098 -14.12792 -13.97748 -13.74131 -13.37284 -13.17308 -12.99706 -12.97385 -12.91417 -12.83669 -12.62019 -12.53111 -12.38475 -12.10027 -11.88040 -11.77250 -11.12943 -10.86280 -9.93966 -9.72243 -9.06717 -8.90634 -7.97659 -5.27870 0.74120 1.45333 1.46855 1.48006 1.57481 1.65063 1.98638 2.34621 2.50892 2.53537 2.80367 2.88109 3.03487 3.35094 3.63774 3.67104 3.86838 3.87989 3.94759 4.04884 4.21416 4.24577 4.25858 4.41253 4.50097 4.53666 4.67763 4.68605 4.77193 4.78592 4.86494 4.90157 5.00524 5.07134 5.21120 5.27106 5.39373 5.50254 5.81540 6.01704 6.22067 6.60952 6.68053 7.28006 7.30047 7.97326 8.21800 9.25534 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.009347 B = 0.004291 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2994.890567 B = 6523.000411 C = 8574.935454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.025 3.975 3 C -0.196 4.196 4 C -0.260 4.260 5 C 0.600 3.400 6 O -0.593 6.593 7 N -0.609 5.609 8 C 0.105 3.895 9 C -0.158 4.158 10 H 0.122 0.878 11 C 0.474 3.526 12 F -0.178 7.178 13 F -0.187 7.187 14 F -0.175 7.175 15 C 0.175 3.825 16 H 0.078 0.922 17 N -0.720 5.720 18 C -0.244 4.244 19 H 0.081 0.919 20 C -0.068 4.068 21 N -0.966 5.966 22 Si 0.970 3.030 23 H -0.263 1.263 24 H -0.298 1.298 25 H -0.291 1.291 26 C 0.087 3.913 27 C 0.100 3.900 28 C -0.095 4.095 29 N -0.534 5.534 30 H 0.431 0.569 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.169 0.831 35 H 0.126 0.874 36 H 0.104 0.896 37 H 0.374 0.626 38 H 0.251 0.749 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.097 0.903 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.537 -6.033 12.557 23.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.085 4.085 3 C -0.219 4.219 4 C -0.270 4.270 5 C 0.394 3.606 6 O -0.475 6.475 7 N -0.341 5.341 8 C -0.018 4.018 9 C -0.179 4.179 10 H 0.140 0.860 11 C 0.420 3.580 12 F -0.159 7.159 13 F -0.169 7.169 14 F -0.156 7.156 15 C 0.064 3.936 16 H 0.096 0.904 17 N -0.359 5.359 18 C -0.375 4.375 19 H 0.099 0.901 20 C -0.261 4.261 21 N -0.616 5.616 22 Si 0.799 3.201 23 H -0.188 1.188 24 H -0.225 1.225 25 H -0.218 1.218 26 C -0.039 4.039 27 C -0.020 4.020 28 C -0.152 4.152 29 N -0.132 5.132 30 H 0.271 0.729 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.186 0.814 35 H 0.144 0.856 36 H 0.122 0.878 37 H 0.207 0.793 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.116 0.884 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.895 -6.385 12.693 23.641 hybrid contribution 1.150 -0.004 -0.863 1.438 sum -17.745 -6.389 11.830 22.263 Atomic orbital electron populations 1.20470 0.84634 1.04780 1.04029 1.20821 0.95103 0.85191 1.07381 1.22405 0.89649 0.99480 1.10364 1.20064 0.92900 0.93052 1.21015 1.17502 0.88212 0.79853 0.75017 1.90694 1.31543 1.71878 1.53422 1.48542 1.09440 1.05714 1.70382 1.22927 0.89132 0.92245 0.97455 1.23744 0.97946 0.91584 1.04644 0.86024 1.20020 0.76761 0.87409 0.73847 1.93175 1.91741 1.90362 1.40620 1.93213 1.89737 1.69812 1.64095 1.93183 1.30449 1.95946 1.96015 1.21242 0.88165 0.97168 0.87000 0.90370 1.42496 1.17560 1.54831 1.21027 1.19646 0.93425 1.21237 1.03208 0.90121 1.25527 1.02356 1.00547 0.97665 1.69825 1.39622 1.38784 1.13382 0.85123 0.79838 0.77266 0.77835 1.18761 1.22513 1.21838 1.23289 0.90994 0.90273 0.99358 1.20349 0.86266 0.93786 1.01552 1.20548 0.93814 0.97441 1.03420 1.41503 1.04089 1.09871 1.57710 0.72917 0.89516 0.88955 0.90057 0.81432 0.85614 0.87839 0.79312 0.94031 0.89386 0.92713 0.90810 0.88429 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.41 71.24 0.74 0.07 16 2 C 0.02 0.42 7.13 40.98 0.29 0.71 16 3 C -0.20 -4.38 9.24 23.62 0.22 -4.16 16 4 C -0.26 -7.89 6.20 -19.04 -0.12 -8.01 16 5 C 0.60 23.01 7.89 86.61 0.68 23.69 16 6 O -0.59 -27.23 15.07 -4.10 -0.06 -27.29 16 7 N -0.61 -21.11 3.31 -811.20 -2.69 -23.80 16 8 C 0.10 2.71 5.28 86.54 0.46 3.16 16 9 C -0.16 -4.74 2.83 -9.89 -0.03 -4.77 16 10 H 0.12 3.88 7.67 -2.39 -0.02 3.86 16 11 C 0.47 12.91 2.51 71.98 0.18 13.09 16 12 F -0.18 -4.60 16.05 44.97 0.72 -3.88 16 13 F -0.19 -6.08 17.07 44.97 0.77 -5.31 16 14 F -0.17 -4.12 17.11 44.97 0.77 -3.36 16 15 C 0.18 6.71 3.02 46.03 0.14 6.85 16 16 H 0.08 2.96 7.35 -2.39 -0.02 2.94 16 17 N -0.72 -35.92 5.13 -318.00 -1.63 -37.55 16 18 C -0.24 -13.49 9.96 84.03 0.84 -12.65 16 19 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 20 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 21 N -0.97 -59.75 13.06 21.65 0.28 -59.47 16 22 Si 0.97 46.89 29.55 68.60 2.03 48.92 16 23 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 26 C 0.09 3.27 6.79 86.67 0.59 3.85 16 27 C 0.10 2.51 7.17 41.78 0.30 2.81 16 28 C -0.09 -2.25 10.01 71.23 0.71 -1.54 16 29 N -0.53 -8.97 5.90 -171.08 -1.01 -9.98 16 30 H 0.43 3.94 8.96 -92.71 -0.83 3.11 16 31 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.17 3.06 5.25 -2.91 -0.02 3.04 16 35 H 0.13 2.79 4.39 -2.39 -0.01 2.78 16 36 H 0.10 2.17 7.33 -2.39 -0.02 2.15 16 37 H 0.37 20.31 7.55 -92.71 -0.70 19.61 16 38 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.09 2.82 8.14 -2.38 -0.02 2.80 16 40 H 0.05 2.54 7.80 -2.39 -0.02 2.53 16 41 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 42 H 0.10 1.51 8.14 -2.39 -0.02 1.50 16 43 H 0.07 2.28 6.30 -2.39 -0.02 2.26 16 Total: -1.00 -76.23 365.12 4.22 -72.01 By element: Atomic # 1 Polarization: 30.50 SS G_CDS: -0.43 Total: 30.07 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: 5.47 Total: 19.64 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -5.04 Total: -130.79 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.06 Total: -27.29 kcal Atomic # 9 Polarization: -14.80 SS G_CDS: 2.26 Total: -12.54 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -76.23 4.22 -72.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099312803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.089 kcal (2) G-P(sol) polarization free energy of solvation -76.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds