Wall clock time and date at job start Wed Apr 1 2020 03:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81401 * 103.00164 * 2 1 4 4 C 1.50699 * 109.47648 * 180.02562 * 3 2 1 5 5 O 1.21280 * 119.99645 * 0.02562 * 4 3 2 6 6 N 1.34774 * 120.00352 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00179 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47352 * 180.02562 * 7 6 4 9 9 C 1.53006 * 109.53714 * 305.10957 * 8 7 6 10 10 C 1.53098 * 109.50547 * 185.00287 * 8 7 6 11 11 N 1.47016 * 109.25609 * 183.21660 * 10 8 7 12 12 C 1.46893 * 111.00007 * 182.39025 * 11 10 8 13 13 C 1.50708 * 109.47146 * 169.99764 * 12 11 10 14 14 O 1.21288 * 119.99815 * 359.97438 * 13 12 11 15 15 N 1.34774 * 119.99719 * 180.02562 * 13 12 11 16 16 C 1.37101 * 119.99349 * 180.02562 * 15 13 12 17 17 H 1.07991 * 120.00515 * 359.97438 * 16 15 13 18 18 C 1.38955 * 119.99490 * 179.97438 * 16 15 13 19 19 N 1.31413 * 120.00236 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99845 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47174 * 270.00316 * 20 18 16 22 22 H 1.48501 * 109.47062 * 30.00267 * 20 18 16 23 23 H 1.48504 * 109.46913 * 150.00066 * 20 18 16 24 24 C 1.47012 * 110.75262 * 58.60891 * 11 10 8 25 25 C 1.53098 * 109.26200 * 301.38298 * 24 11 10 26 26 O 1.43010 * 109.50725 * 65.21654 * 8 7 6 27 27 H 1.09001 * 109.47457 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47181 * 299.99711 * 1 2 3 29 29 H 1.08997 * 109.47189 * 60.00026 * 1 2 3 30 30 H 1.08999 * 109.46883 * 59.99614 * 3 2 1 31 31 H 1.09004 * 109.47356 * 300.00453 * 3 2 1 32 32 H 0.96996 * 119.99720 * 0.02562 * 6 4 3 33 33 H 1.08996 * 109.46952 * 60.00164 * 7 6 4 34 34 H 1.08998 * 109.47133 * 300.00468 * 7 6 4 35 35 H 1.09000 * 109.47208 * 299.88869 * 9 8 7 36 36 H 1.08991 * 109.46986 * 59.89195 * 9 8 7 37 37 H 1.09006 * 109.46515 * 179.89222 * 9 8 7 38 38 H 1.08994 * 109.50998 * 63.27965 * 10 8 7 39 39 H 1.08996 * 109.50209 * 303.14614 * 10 8 7 40 40 H 1.09002 * 109.47091 * 49.99935 * 12 11 10 41 41 H 1.09000 * 109.47343 * 289.99552 * 12 11 10 42 42 H 0.96996 * 120.00564 * 359.97438 * 15 13 12 43 43 H 0.97001 * 119.99781 * 179.97438 * 19 18 16 44 44 H 1.08998 * 109.50579 * 61.32624 * 24 11 10 45 45 H 1.09005 * 109.50522 * 181.44873 * 24 11 10 46 46 H 1.08992 * 109.50677 * 296.91755 * 25 24 11 47 47 H 1.08997 * 109.54006 * 176.80258 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9374 -0.0006 5 8 4.4404 0.9622 -0.0015 6 7 4.2575 3.1731 -0.0013 7 6 5.7131 3.3383 -0.0013 8 6 6.0573 4.8291 -0.0014 9 6 5.3643 5.5141 -1.1811 10 6 7.5731 5.0037 -0.1273 11 7 7.9044 6.4339 -0.0494 12 6 9.3469 6.6503 -0.2230 13 6 9.6182 8.1241 -0.3832 14 8 8.7000 8.9161 -0.3559 15 7 10.8809 8.5618 -0.5578 16 6 11.1276 9.9026 -0.7030 17 1 10.3102 10.6079 -0.6778 18 6 12.4295 10.3539 -0.8824 19 7 13.4242 9.4957 -0.9125 20 14 12.7657 12.1807 -1.0810 21 1 12.7063 12.5413 -2.5203 22 1 11.7432 12.9562 -0.3337 23 1 14.1147 12.4966 -0.5466 24 6 7.4342 7.0092 1.2192 25 6 5.9199 6.8144 1.3315 26 8 5.6142 5.4216 1.2224 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 1.8031 2.2371 0.8900 31 1 1.8031 2.2372 -0.8900 32 1 3.6809 3.9531 -0.0009 33 1 6.1320 2.8683 -0.8910 34 1 6.1320 2.8691 0.8889 35 1 5.7054 5.0647 -2.1137 36 1 4.2853 5.3893 -1.0909 37 1 5.6087 6.5764 -1.1789 38 1 7.9072 4.6044 -1.0848 39 1 8.0694 4.4704 0.6834 40 1 9.6897 6.1192 -1.1110 41 1 9.8784 6.2761 0.6520 42 1 11.6151 7.9283 -0.5800 43 1 14.3330 9.8108 -1.0382 44 1 7.9285 6.5080 2.0514 45 1 7.6672 8.0738 1.2445 46 1 5.4223 7.3602 0.5299 47 1 5.5747 7.1884 2.2953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107720752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:57 Heat of formation + Delta-G solvation = -101.079925 kcal Electronic energy + Delta-G solvation = -28183.017397 eV Core-core repulsion = 24106.709797 eV Total energy + Delta-G solvation = -4076.307599 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.52518 -39.55643 -38.19357 -35.67603 -35.03861 -33.87175 -32.57853 -31.30489 -30.50794 -29.38200 -29.18484 -27.67467 -26.43317 -25.01796 -23.83045 -22.20948 -20.91832 -19.35900 -19.26467 -17.98009 -17.72003 -17.04241 -16.57691 -16.17661 -16.00430 -15.80706 -15.56369 -15.16401 -14.85200 -14.59274 -14.20871 -14.17704 -14.13776 -14.01584 -13.85093 -13.54505 -13.48591 -13.26503 -12.86266 -12.65003 -12.51486 -12.39786 -11.98788 -11.73695 -11.60320 -11.46629 -11.28260 -11.21140 -10.95499 -10.43531 -10.42559 -10.38460 -10.27360 -10.24094 -9.69222 -9.51565 -9.37771 -8.50673 -8.04480 -8.04342 -7.95120 -6.45916 -3.87040 1.05473 2.12524 2.28074 2.84108 3.14544 3.23704 3.28847 3.54445 3.80947 3.86244 4.18023 4.33518 4.52830 4.59367 4.66702 4.68514 4.70707 4.75284 4.77533 4.95798 5.14220 5.20133 5.26219 5.32217 5.33668 5.44039 5.46906 5.50980 5.58366 5.73428 5.74722 5.77578 5.84624 6.05897 6.06722 6.20472 6.25969 6.27640 7.06633 7.09801 7.12182 7.24118 7.50969 7.85869 8.01404 8.56526 9.13361 9.49403 10.00492 10.71630 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.040120 B = 0.001700 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.733413 B =16466.267383 C =16749.933611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.184 6.184 3 C -0.129 4.129 4 C 0.529 3.471 5 O -0.521 6.521 6 N -0.716 5.716 7 C 0.138 3.862 8 C 0.110 3.890 9 C -0.170 4.170 10 C 0.031 3.969 11 N -0.508 5.508 12 C 0.046 3.954 13 C 0.444 3.556 14 O -0.580 6.580 15 N -0.562 5.562 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.023 3.977 19 N -0.900 5.900 20 Si 0.930 3.070 21 H -0.278 1.278 22 H -0.270 1.270 23 H -0.284 1.284 24 C 0.014 3.986 25 C 0.065 3.935 26 O -0.379 6.379 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.405 0.595 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.049 0.951 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.032 0.968 45 H 0.114 0.886 46 H 0.065 0.935 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.438 -14.587 2.124 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.040 5.960 3 C -0.280 4.280 4 C 0.313 3.687 5 O -0.396 6.396 6 N -0.369 5.369 7 C 0.014 3.986 8 C 0.070 3.930 9 C -0.227 4.227 10 C -0.098 4.098 11 N -0.233 5.233 12 C -0.086 4.086 13 C 0.229 3.771 14 O -0.464 6.464 15 N -0.199 5.199 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.542 5.542 20 Si 0.757 3.243 21 H -0.204 1.204 22 H -0.194 1.194 23 H -0.209 1.209 24 C -0.114 4.114 25 C -0.011 4.011 26 O -0.299 6.299 27 H 0.123 0.877 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.241 0.759 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.061 0.939 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.050 0.950 45 H 0.132 0.868 46 H 0.083 0.917 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.972 -15.440 1.881 26.110 hybrid contribution 0.245 1.776 0.342 1.825 sum -20.727 -13.664 2.223 24.925 Atomic orbital electron populations 1.23545 0.95850 1.06804 1.04918 1.87582 1.04549 1.05853 1.98014 1.23511 0.97672 0.99563 1.07228 1.19612 0.88862 0.83467 0.76789 1.90768 1.61967 1.38437 1.48469 1.45794 1.08052 1.07729 1.75349 1.21327 0.80210 0.93714 1.03350 1.21665 0.93505 0.91853 0.85987 1.22291 0.99356 1.03626 0.97464 1.22657 0.94762 0.90142 1.02220 1.61776 1.14838 1.11940 1.34715 1.21878 0.87802 0.97296 1.01586 1.19674 0.83813 0.88980 0.84629 1.90469 1.43597 1.56387 1.55966 1.41866 1.06261 1.08680 1.63053 1.19692 0.93642 0.83073 1.46580 0.87886 1.25269 0.95122 1.00220 0.97258 1.69612 1.00002 1.34725 1.49816 0.85857 0.77682 0.82143 0.78592 1.20380 1.19436 1.20923 1.22964 0.95406 1.03718 0.89275 1.22706 0.94745 0.81467 1.02198 1.87979 1.80276 1.24098 1.37520 0.87725 0.90459 0.90457 0.87100 0.87148 0.75910 0.89630 0.90460 0.91393 0.92838 0.89714 0.89488 0.93882 0.89173 0.93279 0.77467 0.91824 0.94954 0.86775 0.91707 0.88636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 10.76 101.05 1.09 0.40 16 2 S -0.18 -1.65 21.52 -107.50 -2.31 -3.97 16 3 C -0.13 -0.90 6.42 36.00 0.23 -0.66 16 4 C 0.53 5.41 7.85 -10.99 -0.09 5.32 16 5 O -0.52 -7.53 15.86 5.56 0.09 -7.44 16 6 N -0.72 -6.27 5.19 -60.30 -0.31 -6.58 16 7 C 0.14 1.39 4.85 -4.04 -0.02 1.37 16 8 C 0.11 1.19 0.78 -90.57 -0.07 1.12 16 9 C -0.17 -1.73 7.95 37.16 0.30 -1.43 16 10 C 0.03 0.39 4.34 -3.71 -0.02 0.37 16 11 N -0.51 -7.87 3.83 -235.75 -0.90 -8.78 16 12 C 0.05 0.78 5.45 -4.98 -0.03 0.75 16 13 C 0.44 10.02 7.49 -10.98 -0.08 9.94 16 14 O -0.58 -14.79 13.93 5.55 0.08 -14.71 16 15 N -0.56 -13.84 5.29 -10.96 -0.06 -13.89 16 16 C -0.30 -8.17 9.68 -14.93 -0.14 -8.31 16 17 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 18 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 19 N -0.90 -24.10 13.05 55.50 0.72 -23.38 16 20 Si 0.93 20.67 29.55 -169.99 -5.02 15.64 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.01 0.22 5.29 -3.71 -0.02 0.20 16 25 C 0.07 0.81 6.61 37.21 0.25 1.06 16 26 O -0.38 -4.56 10.23 -35.23 -0.36 -4.92 16 27 H 0.10 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.08 0.30 8.14 -51.92 -0.42 -0.13 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.11 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.11 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.41 2.78 6.99 -40.82 -0.29 2.49 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.44 6.57 -51.93 -0.34 0.10 16 37 H 0.08 1.07 6.12 -51.93 -0.32 0.75 16 38 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 1.39 8.04 -51.93 -0.42 0.97 16 41 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 42 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 43 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.11 2.10 5.88 -51.93 -0.31 1.80 16 46 H 0.06 0.82 6.49 -51.93 -0.34 0.48 16 47 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -32.95 391.95 -8.21 -41.16 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -7.33 Total: 10.33 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 1.30 Total: 10.63 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.55 Total: -52.63 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.20 Total: -27.08 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.31 Total: -3.97 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.95 -8.21 -41.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107720752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.921 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds