Wall clock time and date at job start Wed Apr 1 2020 03:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81402 * 102.99834 * 2 1 4 4 C 1.50697 * 109.47330 * 180.02562 * 3 2 1 5 5 O 1.21286 * 119.99727 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00023 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99686 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.46924 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.50706 * 59.91461 * 8 7 6 10 10 C 1.53096 * 109.50779 * 180.02562 * 8 7 6 11 11 N 1.47013 * 109.25897 * 176.82081 * 10 8 7 12 12 C 1.46900 * 110.99867 * 177.60686 * 11 10 8 13 13 C 1.50698 * 109.46777 * 190.00269 * 12 11 10 14 14 O 1.21296 * 120.00659 * 6.28256 * 13 12 11 15 15 N 1.34785 * 119.99810 * 186.27998 * 13 12 11 16 16 C 1.37094 * 119.99826 * 180.02562 * 15 13 12 17 17 H 1.08000 * 120.00330 * 359.97438 * 16 15 13 18 18 C 1.38956 * 119.99844 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00154 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99752 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47320 * 90.00367 * 20 18 16 22 22 H 1.48507 * 109.46860 * 210.00473 * 20 18 16 23 23 H 1.48496 * 109.47461 * 330.00173 * 20 18 16 24 24 C 1.47010 * 110.75838 * 301.38888 * 11 10 8 25 25 C 1.53102 * 109.25505 * 58.61027 * 24 11 10 26 26 O 1.43011 * 109.26194 * 303.15276 * 25 24 11 27 27 H 1.09006 * 109.47180 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47328 * 299.99589 * 1 2 3 29 29 H 1.08994 * 109.47335 * 59.99912 * 1 2 3 30 30 H 1.09005 * 109.47260 * 60.00060 * 3 2 1 31 31 H 1.08996 * 109.47422 * 300.00722 * 3 2 1 32 32 H 0.96995 * 120.00386 * 0.02562 * 6 4 3 33 33 H 1.08998 * 109.46962 * 60.00437 * 7 6 4 34 34 H 1.08998 * 109.47094 * 299.99919 * 7 6 4 35 35 H 1.08998 * 109.47261 * 180.09065 * 9 8 7 36 36 H 1.09010 * 109.47195 * 300.08473 * 9 8 7 37 37 H 1.08992 * 109.47268 * 60.08768 * 9 8 7 38 38 H 1.09007 * 109.50291 * 56.89434 * 10 8 7 39 39 H 1.08996 * 109.54182 * 296.78406 * 10 8 7 40 40 H 1.09002 * 109.47024 * 310.00153 * 12 11 10 41 41 H 1.08999 * 109.46850 * 70.00382 * 12 11 10 42 42 H 0.96995 * 119.99619 * 0.02562 * 15 13 12 43 43 H 0.96994 * 120.00270 * 179.97438 * 19 18 16 44 44 H 1.08990 * 109.50642 * 178.54654 * 24 11 10 45 45 H 1.09000 * 109.50234 * 298.68267 * 24 11 10 46 46 H 1.08999 * 109.50413 * 63.09539 * 25 24 11 47 47 H 1.09006 * 109.50411 * 183.21575 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7193 1.9375 -0.0006 5 8 4.4403 0.9622 -0.0006 6 7 4.2573 3.1732 -0.0002 7 6 5.7130 3.3384 -0.0003 8 6 6.0571 4.8292 0.0009 9 6 5.4678 5.4886 1.2494 10 6 7.5782 5.0028 0.0002 11 7 7.9028 6.4346 -0.0757 12 6 9.3552 6.6487 -0.0216 13 6 9.6402 8.1190 0.1458 14 8 8.7275 8.8969 0.3277 15 7 10.9094 8.5696 0.0935 16 6 11.1688 9.9070 0.2464 17 1 10.3561 10.5997 0.4082 18 6 12.4772 10.3717 0.1919 19 7 12.7259 11.6538 0.3379 20 14 13.8827 9.1737 -0.0888 21 1 14.1334 9.0374 -1.5462 22 1 15.1078 9.6828 0.5787 23 1 13.5246 7.8487 0.4778 24 6 7.3263 7.0361 -1.2868 25 6 5.8077 6.8421 -1.2732 26 8 5.5113 5.4470 -1.1678 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8030 2.2372 0.8900 31 1 1.8030 2.2372 -0.8899 32 1 3.6808 3.9532 0.0009 33 1 6.1318 2.8691 -0.8905 34 1 6.1320 2.8684 0.8895 35 1 5.7119 6.5509 1.2488 36 1 4.3847 5.3647 1.2488 37 1 5.8866 5.0200 2.1398 38 1 8.0029 4.4872 -0.8612 39 1 7.9935 4.5834 0.9166 40 1 9.7722 6.0993 0.8224 41 1 9.8094 6.2935 -0.9466 42 1 11.6392 7.9475 -0.0522 43 1 13.6392 11.9780 0.3002 44 1 7.5570 8.1011 -1.3095 45 1 7.7470 6.5530 -2.1687 46 1 5.3810 7.3704 -0.4206 47 1 5.3822 7.2359 -2.1962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107720753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:00 Heat of formation + Delta-G solvation = -94.943375 kcal Electronic energy + Delta-G solvation = -28242.162038 eV Core-core repulsion = 24166.120539 eV Total energy + Delta-G solvation = -4076.041498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.57676 -39.60658 -38.36669 -35.75570 -35.08315 -33.93019 -32.65062 -31.72672 -30.54253 -29.51341 -29.20398 -27.78792 -26.47866 -25.03277 -23.79314 -22.20838 -20.95605 -19.43882 -19.40030 -18.38718 -17.77839 -17.08600 -16.58364 -16.25629 -16.05238 -15.82319 -15.57461 -15.27770 -15.02864 -14.73103 -14.32324 -14.21254 -14.10141 -14.03824 -13.80999 -13.61630 -13.46209 -13.18521 -12.92939 -12.67233 -12.64646 -12.47423 -12.20447 -11.99826 -11.83581 -11.61509 -11.35374 -11.31376 -11.06098 -10.63774 -10.49210 -10.40386 -10.28158 -10.02600 -9.75080 -9.58249 -9.40484 -8.63344 -8.23612 -8.10312 -8.06262 -6.35731 -3.87358 1.03620 2.10707 2.25344 2.80482 2.99219 3.03397 3.12144 3.49162 3.67168 3.73135 4.06199 4.31520 4.50742 4.53432 4.59831 4.67013 4.67184 4.69249 4.73216 4.74582 5.05543 5.15326 5.23113 5.24861 5.27951 5.37856 5.41406 5.44087 5.51978 5.59100 5.67264 5.70311 5.74883 5.86469 5.98239 6.02374 6.15485 6.23940 6.96513 6.99033 7.09257 7.14474 7.53195 7.83221 8.09028 8.55009 8.90144 9.37409 9.77473 10.77227 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.035675 B = 0.001778 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.679684 B =15748.029799 C =16167.145082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.185 6.185 3 C -0.129 4.129 4 C 0.529 3.471 5 O -0.521 6.521 6 N -0.715 5.715 7 C 0.139 3.861 8 C 0.110 3.890 9 C -0.170 4.170 10 C 0.032 3.968 11 N -0.508 5.508 12 C 0.043 3.957 13 C 0.452 3.548 14 O -0.560 6.560 15 N -0.590 5.590 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.043 3.957 19 N -0.880 5.880 20 Si 0.879 3.121 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.269 1.269 24 C 0.016 3.984 25 C 0.065 3.935 26 O -0.379 6.379 27 H 0.104 0.896 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.406 0.594 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.370 0.630 43 H 0.274 0.726 44 H 0.110 0.890 45 H 0.034 0.966 46 H 0.066 0.934 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.275 -19.722 -1.604 28.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.040 5.960 3 C -0.280 4.280 4 C 0.313 3.687 5 O -0.397 6.397 6 N -0.368 5.368 7 C 0.014 3.986 8 C 0.070 3.930 9 C -0.228 4.228 10 C -0.097 4.097 11 N -0.232 5.232 12 C -0.088 4.088 13 C 0.237 3.763 14 O -0.442 6.442 15 N -0.229 5.229 16 C -0.434 4.434 17 H 0.137 0.863 18 C -0.161 4.161 19 N -0.520 5.520 20 Si 0.705 3.295 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.195 1.195 24 C -0.112 4.112 25 C -0.011 4.011 26 O -0.298 6.298 27 H 0.123 0.877 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.241 0.759 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.067 0.933 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.128 0.872 45 H 0.052 0.948 46 H 0.084 0.916 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -19.846 -20.434 -1.199 28.511 hybrid contribution 0.762 0.525 -0.740 1.185 sum -19.084 -19.909 -1.938 27.646 Atomic orbital electron populations 1.23545 0.95814 1.06812 1.04935 1.87577 1.04593 1.05848 1.98017 1.23509 0.97643 0.99567 1.07253 1.19616 0.88876 0.83447 0.76761 1.90768 1.61975 1.38440 1.48516 1.45739 1.08001 1.07749 1.75323 1.21339 0.80338 0.93599 1.03284 1.21676 0.92679 0.91699 0.86974 1.22297 1.00010 1.03729 0.96732 1.22658 0.94996 0.89930 1.02144 1.61756 1.11117 1.11336 1.39033 1.21920 0.88222 0.97112 1.01580 1.19586 0.83438 0.88940 0.84302 1.90537 1.43899 1.57046 1.52690 1.42224 1.06197 1.08933 1.65567 1.19417 0.95240 0.81898 1.46881 0.86253 1.25035 0.97411 0.96034 0.97580 1.69615 1.21058 1.12576 1.48740 0.86683 0.82836 0.80841 0.79098 1.19652 1.20123 1.19487 1.22919 0.95119 1.03179 0.90012 1.22708 0.94556 0.81401 1.02455 1.87973 1.75810 1.23403 1.42623 0.87720 0.90446 0.90446 0.87132 0.87084 0.75854 0.90555 0.89663 0.89704 0.92735 0.91415 0.93849 0.89426 0.88927 0.93283 0.79716 0.91570 0.87206 0.94755 0.91560 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 10.76 101.05 1.09 0.42 16 2 S -0.18 -1.62 21.52 -107.50 -2.31 -3.93 16 3 C -0.13 -0.87 6.42 36.00 0.23 -0.64 16 4 C 0.53 5.26 7.85 -10.99 -0.09 5.17 16 5 O -0.52 -7.37 15.87 5.55 0.09 -7.28 16 6 N -0.71 -6.01 5.15 -60.29 -0.31 -6.33 16 7 C 0.14 1.32 4.82 -4.04 -0.02 1.30 16 8 C 0.11 1.12 0.76 -90.57 -0.07 1.05 16 9 C -0.17 -1.67 8.00 37.16 0.30 -1.37 16 10 C 0.03 0.37 4.34 -3.71 -0.02 0.35 16 11 N -0.51 -7.46 3.79 -235.76 -0.89 -8.35 16 12 C 0.04 0.68 5.45 -4.98 -0.03 0.66 16 13 C 0.45 9.77 7.35 -10.98 -0.08 9.69 16 14 O -0.56 -14.15 14.25 5.54 0.08 -14.07 16 15 N -0.59 -13.59 5.09 -10.96 -0.06 -13.65 16 16 C -0.31 -8.43 10.16 -14.93 -0.15 -8.58 16 17 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 18 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 19 N -0.88 -25.28 13.96 55.50 0.77 -24.50 16 20 Si 0.88 19.03 27.74 -169.99 -4.71 14.31 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 24 C 0.02 0.23 5.30 -3.71 -0.02 0.21 16 25 C 0.07 0.78 6.61 37.21 0.25 1.02 16 26 O -0.38 -4.30 10.04 -35.23 -0.35 -4.65 16 27 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 28 H 0.08 0.28 8.14 -51.92 -0.42 -0.14 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.11 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.11 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.41 2.68 7.19 -40.82 -0.29 2.38 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.04 6.12 -51.93 -0.32 0.72 16 36 H 0.05 0.44 6.86 -51.92 -0.36 0.08 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.49 8.14 -51.92 -0.42 0.07 16 39 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 40 H 0.09 1.29 8.04 -51.93 -0.42 0.87 16 41 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 42 H 0.37 7.52 5.76 -40.82 -0.24 7.29 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.11 1.94 6.10 -51.93 -0.32 1.63 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.81 6.49 -51.93 -0.34 0.47 16 47 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 389.47 15.07 5.87 5.87 Total: -1.00 -34.27 389.47 -7.86 -42.13 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -7.32 Total: 10.13 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 1.30 Total: 10.34 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.49 Total: -52.83 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.19 Total: -26.01 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.71 Total: 14.31 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.31 Total: -3.93 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.27 -7.86 -42.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107720753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.815 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds