Wall clock time and date at job start Wed Apr 1 2020 03:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81402 * 102.99834 * 2 1 4 4 C 1.50697 * 109.47330 * 180.02562 * 3 2 1 5 5 O 1.21286 * 119.99727 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00023 * 180.02562 * 4 3 2 7 7 C 1.46504 * 119.99686 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.46924 * 180.02562 * 7 6 4 9 9 C 1.52998 * 109.50706 * 59.91461 * 8 7 6 10 10 C 1.53096 * 109.50779 * 180.02562 * 8 7 6 11 11 N 1.47013 * 109.25897 * 176.82081 * 10 8 7 12 12 C 1.46900 * 110.99867 * 177.60686 * 11 10 8 13 13 C 1.50698 * 109.46777 * 190.00269 * 12 11 10 14 14 O 1.21296 * 120.00659 * 6.28256 * 13 12 11 15 15 N 1.34785 * 119.99810 * 186.27998 * 13 12 11 16 16 C 1.37094 * 119.99826 * 180.02562 * 15 13 12 17 17 H 1.08000 * 120.00330 * 359.97438 * 16 15 13 18 18 C 1.38956 * 119.99844 * 180.02562 * 16 15 13 19 19 N 1.31411 * 120.00154 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99752 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47320 * 90.00367 * 20 18 16 22 22 H 1.48507 * 109.46860 * 210.00473 * 20 18 16 23 23 H 1.48496 * 109.47461 * 330.00173 * 20 18 16 24 24 C 1.47010 * 110.75838 * 301.38888 * 11 10 8 25 25 C 1.53102 * 109.25505 * 58.61027 * 24 11 10 26 26 O 1.43011 * 109.26194 * 303.15276 * 25 24 11 27 27 H 1.09006 * 109.47180 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47328 * 299.99589 * 1 2 3 29 29 H 1.08994 * 109.47335 * 59.99912 * 1 2 3 30 30 H 1.09005 * 109.47260 * 60.00060 * 3 2 1 31 31 H 1.08996 * 109.47422 * 300.00722 * 3 2 1 32 32 H 0.96995 * 120.00386 * 0.02562 * 6 4 3 33 33 H 1.08998 * 109.46962 * 60.00437 * 7 6 4 34 34 H 1.08998 * 109.47094 * 299.99919 * 7 6 4 35 35 H 1.08998 * 109.47261 * 180.09065 * 9 8 7 36 36 H 1.09010 * 109.47195 * 300.08473 * 9 8 7 37 37 H 1.08992 * 109.47268 * 60.08768 * 9 8 7 38 38 H 1.09007 * 109.50291 * 56.89434 * 10 8 7 39 39 H 1.08996 * 109.54182 * 296.78406 * 10 8 7 40 40 H 1.09002 * 109.47024 * 310.00153 * 12 11 10 41 41 H 1.08999 * 109.46850 * 70.00382 * 12 11 10 42 42 H 0.96995 * 119.99619 * 0.02562 * 15 13 12 43 43 H 0.96994 * 120.00270 * 179.97438 * 19 18 16 44 44 H 1.08990 * 109.50642 * 178.54654 * 24 11 10 45 45 H 1.09000 * 109.50234 * 298.68267 * 24 11 10 46 46 H 1.08999 * 109.50413 * 63.09539 * 25 24 11 47 47 H 1.09006 * 109.50411 * 183.21575 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7193 1.9375 -0.0006 5 8 4.4403 0.9622 -0.0006 6 7 4.2573 3.1732 -0.0002 7 6 5.7130 3.3384 -0.0003 8 6 6.0571 4.8292 0.0009 9 6 5.4678 5.4886 1.2494 10 6 7.5782 5.0028 0.0002 11 7 7.9028 6.4346 -0.0757 12 6 9.3552 6.6487 -0.0216 13 6 9.6402 8.1190 0.1458 14 8 8.7275 8.8969 0.3277 15 7 10.9094 8.5696 0.0935 16 6 11.1688 9.9070 0.2464 17 1 10.3561 10.5997 0.4082 18 6 12.4772 10.3717 0.1919 19 7 12.7259 11.6538 0.3379 20 14 13.8827 9.1737 -0.0888 21 1 14.1334 9.0374 -1.5462 22 1 15.1078 9.6828 0.5787 23 1 13.5246 7.8487 0.4778 24 6 7.3263 7.0361 -1.2868 25 6 5.8077 6.8421 -1.2732 26 8 5.5113 5.4470 -1.1678 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8030 2.2372 0.8900 31 1 1.8030 2.2372 -0.8899 32 1 3.6808 3.9532 0.0009 33 1 6.1318 2.8691 -0.8905 34 1 6.1320 2.8684 0.8895 35 1 5.7119 6.5509 1.2488 36 1 4.3847 5.3647 1.2488 37 1 5.8866 5.0200 2.1398 38 1 8.0029 4.4872 -0.8612 39 1 7.9935 4.5834 0.9166 40 1 9.7722 6.0993 0.8224 41 1 9.8094 6.2935 -0.9466 42 1 11.6392 7.9475 -0.0522 43 1 13.6392 11.9780 0.3002 44 1 7.5570 8.1011 -1.3095 45 1 7.7470 6.5530 -2.1687 46 1 5.3810 7.3704 -0.4206 47 1 5.3822 7.2359 -2.1962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107720753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:59 Heat of formation + Delta-G solvation = -122.974932 kcal Electronic energy + Delta-G solvation = -28243.377577 eV Core-core repulsion = 24166.120539 eV Total energy + Delta-G solvation = -4077.257038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.51441 -40.57585 -39.93560 -36.91059 -36.03414 -35.78857 -33.74829 -33.49639 -31.15086 -30.67733 -29.58783 -28.92143 -27.39405 -26.51748 -25.07359 -23.30240 -21.70792 -21.25381 -20.34987 -20.21715 -18.55110 -18.06014 -17.59047 -17.31860 -17.05128 -16.78556 -16.70526 -16.50250 -16.28858 -15.80535 -15.44909 -15.28620 -15.18276 -14.84433 -14.66523 -14.59770 -14.51523 -14.30424 -14.08963 -13.92007 -13.73780 -13.26501 -13.15407 -13.09561 -12.96599 -12.84631 -12.59836 -12.41154 -12.23885 -12.21787 -11.98822 -11.51118 -11.38537 -11.10865 -10.91274 -10.76430 -10.31304 -10.22263 -10.16319 -9.29843 -8.68759 -8.41319 -6.01701 0.52150 1.29872 1.34513 1.43491 1.53320 1.65445 1.95402 2.08901 2.22317 2.55364 2.63109 3.15069 3.15330 3.65551 3.69272 3.81077 3.87995 3.99065 4.09143 4.14415 4.21915 4.29059 4.34640 4.39648 4.40040 4.41669 4.48484 4.54117 4.62048 4.63378 4.68179 4.85073 4.90522 4.94310 4.94787 5.06100 5.31725 5.40583 5.52158 5.80892 5.95013 6.01436 6.16150 6.43695 6.59670 6.88664 7.14333 7.40210 7.96833 8.76142 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.035675 B = 0.001778 C = 0.001731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.679684 B =15748.029799 C =16167.145082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.270 6.270 3 C -0.110 4.110 4 C 0.525 3.475 5 O -0.568 6.568 6 N -0.704 5.704 7 C 0.145 3.855 8 C 0.114 3.886 9 C -0.165 4.165 10 C 0.031 3.969 11 N -0.524 5.524 12 C 0.053 3.947 13 C 0.453 3.547 14 O -0.602 6.602 15 N -0.593 5.593 16 C -0.326 4.326 17 H 0.057 0.943 18 C -0.013 4.013 19 N -0.934 5.934 20 Si 0.962 3.038 21 H -0.259 1.259 22 H -0.276 1.276 23 H -0.231 1.231 24 C 0.017 3.983 25 C 0.073 3.927 26 O -0.378 6.378 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.417 0.583 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.105 0.895 40 H 0.123 0.877 41 H 0.075 0.925 42 H 0.388 0.612 43 H 0.278 0.722 44 H 0.070 0.930 45 H 0.040 0.960 46 H 0.060 0.940 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.779 -22.672 -1.829 30.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.046 6.046 3 C -0.261 4.261 4 C 0.311 3.689 5 O -0.447 6.447 6 N -0.358 5.358 7 C 0.020 3.980 8 C 0.074 3.926 9 C -0.223 4.223 10 C -0.097 4.097 11 N -0.249 5.249 12 C -0.078 4.078 13 C 0.241 3.759 14 O -0.486 6.486 15 N -0.235 5.235 16 C -0.455 4.455 17 H 0.075 0.925 18 C -0.212 4.212 19 N -0.575 5.575 20 Si 0.782 3.218 21 H -0.184 1.184 22 H -0.201 1.201 23 H -0.155 1.155 24 C -0.111 4.111 25 C -0.003 4.003 26 O -0.297 6.297 27 H 0.128 0.872 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.254 0.746 33 H 0.084 0.916 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.123 0.877 40 H 0.140 0.860 41 H 0.093 0.907 42 H 0.224 0.776 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -20.392 -23.389 -1.424 31.063 hybrid contribution 0.746 1.516 -0.653 1.811 sum -19.646 -21.872 -2.076 29.474 Atomic orbital electron populations 1.23545 0.91518 1.07634 1.06281 1.87868 1.09434 1.09011 1.98277 1.23457 0.95281 0.97692 1.09668 1.20138 0.90103 0.82970 0.75660 1.90753 1.63329 1.39934 1.50717 1.45659 1.07736 1.07888 1.74490 1.21217 0.81042 0.92641 1.03104 1.21688 0.92031 0.92051 0.86792 1.22243 1.01357 1.01913 0.96779 1.22777 0.95928 0.87674 1.03363 1.61702 1.10337 1.13633 1.39220 1.21855 0.89624 0.92238 1.04069 1.20782 0.82282 0.91420 0.81438 1.90526 1.45209 1.59185 1.53677 1.42055 1.07491 1.07385 1.66551 1.18991 0.94294 0.83469 1.48739 0.92470 1.26063 1.00477 0.98296 0.96375 1.69795 1.22196 1.15434 1.50055 0.85408 0.77461 0.79261 0.79676 1.18360 1.20116 1.15478 1.22819 0.97087 1.00838 0.90385 1.22625 0.92696 0.81858 1.03139 1.87979 1.75705 1.22849 1.43199 0.87199 0.88996 0.89104 0.84392 0.84726 0.74577 0.91590 0.89100 0.92304 0.90836 0.90687 0.93120 0.87675 0.85953 0.90684 0.77640 0.91204 0.91137 0.94180 0.92166 0.86810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.76 113.37 1.22 0.38 16 2 S -0.27 -4.46 21.52 -56.49 -1.22 -5.68 16 3 C -0.11 -1.21 6.42 71.23 0.46 -0.76 16 4 C 0.53 9.50 7.85 87.66 0.69 10.18 16 5 O -0.57 -15.73 15.87 -3.05 -0.05 -15.78 16 6 N -0.70 -10.10 5.15 -463.05 -2.39 -12.49 16 7 C 0.14 2.41 4.82 86.38 0.42 2.83 16 8 C 0.11 2.06 0.76 -10.76 -0.01 2.06 16 9 C -0.17 -2.88 8.00 71.98 0.58 -2.31 16 10 C 0.03 0.62 4.34 86.31 0.37 1.00 16 11 N -0.52 -14.55 3.79 -899.80 -3.41 -17.96 16 12 C 0.05 1.56 5.45 85.56 0.47 2.03 16 13 C 0.45 19.65 7.35 87.66 0.64 20.30 16 14 O -0.60 -31.78 14.25 -3.08 -0.04 -31.82 16 15 N -0.59 -27.24 5.09 -306.97 -1.56 -28.80 16 16 C -0.33 -18.71 10.16 84.04 0.85 -17.86 16 17 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 18 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 19 N -0.93 -55.74 13.96 21.66 0.30 -55.43 16 20 Si 0.96 38.33 27.74 68.60 1.90 40.24 16 21 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 22 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.23 -7.74 6.52 99.48 0.65 -7.10 16 24 C 0.02 0.48 5.30 86.32 0.46 0.94 16 25 C 0.07 1.67 6.61 72.02 0.48 2.14 16 26 O -0.38 -7.75 10.04 -148.98 -1.50 -9.24 16 27 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.42 4.18 7.19 -92.71 -0.67 3.52 16 33 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.38 6.12 -2.39 -0.01 1.36 16 36 H 0.07 0.98 6.86 -2.38 -0.02 0.96 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.11 1.77 8.09 -2.39 -0.02 1.75 16 40 H 0.12 2.93 8.04 -2.39 -0.02 2.91 16 41 H 0.08 1.87 8.12 -2.39 -0.02 1.85 16 42 H 0.39 14.82 5.76 -92.71 -0.53 14.29 16 43 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 44 H 0.07 2.59 6.10 -2.39 -0.01 2.58 16 45 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.06 1.45 6.49 -2.39 -0.02 1.43 16 47 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -81.70 389.47 -1.13 -82.83 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.26 Total: 33.48 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 7.09 Total: 20.66 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -7.06 Total: -114.68 kcal Atomic # 8 Polarization: -55.26 SS G_CDS: -1.59 Total: -56.85 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 1.90 Total: 40.24 kcal Atomic # 16 Polarization: -4.46 SS G_CDS: -1.22 Total: -5.68 kcal Total: -81.70 -1.13 -82.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107720753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.142 kcal (2) G-P(sol) polarization free energy of solvation -81.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds