Wall clock time and date at job start Wed Apr 1 2020 03:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 120.00507 * 2 1 4 4 O 1.21287 * 119.99659 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00327 * 180.02562 * 3 2 1 6 6 N 1.46908 * 109.46895 * 186.28111 * 5 3 2 7 7 C 1.47015 * 110.99573 * 189.99741 * 6 5 3 8 8 C 1.53102 * 109.25465 * 177.60669 * 7 6 5 9 9 O 1.43020 * 109.25646 * 56.85105 * 8 7 6 10 10 C 1.43015 * 113.73752 * 301.32565 * 9 8 7 11 11 C 1.52994 * 109.54537 * 298.71599 * 10 9 8 12 12 C 1.52998 * 109.50713 * 178.60763 * 10 9 8 13 13 N 1.46499 * 109.47290 * 65.21688 * 12 10 9 14 14 C 1.34773 * 120.00057 * 179.97438 * 13 12 10 15 15 O 1.21281 * 119.99964 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99738 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.47013 * 180.02562 * 16 14 13 18 18 C 1.76193 * 100.00048 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00441 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00258 * 180.02562 * 18 17 16 21 21 N 1.31629 * 119.99648 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00283 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47141 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.46900 * 299.99349 * 22 20 18 25 25 H 1.48499 * 109.47152 * 59.99434 * 22 20 18 26 26 C 1.47017 * 110.99795 * 66.36166 * 6 5 3 27 27 H 1.08997 * 109.46718 * 59.99761 * 1 2 3 28 28 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46898 * 299.99944 * 1 2 3 30 30 H 0.97001 * 119.99647 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47146 * 66.28649 * 5 3 2 32 32 H 1.09000 * 109.46963 * 306.28089 * 5 3 2 33 33 H 1.08997 * 109.50775 * 297.54276 * 7 6 5 34 34 H 1.08999 * 109.50928 * 57.67530 * 7 6 5 35 35 H 1.08993 * 109.50280 * 176.78357 * 8 7 6 36 36 H 1.09003 * 109.50910 * 296.87356 * 8 7 6 37 37 H 1.08999 * 109.47377 * 299.89595 * 11 10 9 38 38 H 1.09009 * 109.47149 * 59.89254 * 11 10 9 39 39 H 1.08995 * 109.47471 * 179.89052 * 11 10 9 40 40 H 1.09005 * 109.47201 * 305.21823 * 12 10 9 41 41 H 1.08998 * 109.47139 * 185.22171 * 12 10 9 42 42 H 0.96995 * 119.99920 * 0.02562 * 13 12 10 43 43 H 1.09001 * 109.46966 * 60.00973 * 16 14 13 44 44 H 1.08991 * 109.47398 * 300.00117 * 16 14 13 45 45 H 0.96998 * 120.00250 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.50528 * 62.46383 * 26 6 5 47 47 H 1.08994 * 109.50781 * 302.32356 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6460 1.1671 -0.0006 6 7 4.1357 2.5438 0.1511 7 6 5.5856 2.6157 -0.0813 8 6 6.0427 4.0729 0.0275 9 8 5.6735 4.5886 1.3094 10 6 4.2681 4.5344 1.5687 11 6 3.5239 5.3826 0.5356 12 6 3.9863 5.0751 2.9720 13 7 4.3308 6.4980 3.0254 14 6 4.1637 7.1892 4.1702 15 8 3.7286 6.6332 5.1564 16 6 4.5186 8.6528 4.2253 17 16 4.1851 9.2925 5.8854 18 6 4.6744 10.9714 5.6704 19 1 5.0456 11.3075 4.7134 20 6 4.5840 11.8620 6.7311 21 7 4.1321 11.4524 7.8976 22 14 5.1021 13.6421 6.5030 23 1 4.9091 14.3809 7.7767 24 1 6.5336 13.6947 6.1117 25 1 4.2749 14.2660 5.4392 26 6 3.7930 3.0820 1.4756 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9500 -0.8401 -0.0004 31 1 4.0089 0.7540 -0.9417 32 1 4.0096 0.5588 0.8276 33 1 6.1042 2.0148 0.6657 34 1 5.8139 2.2361 -1.0772 35 1 7.1253 4.1241 -0.0874 36 1 5.5652 4.6635 -0.7544 37 1 3.8637 6.4162 0.6013 38 1 3.7250 4.9970 -0.4640 39 1 2.4529 5.3390 0.7331 40 1 4.5866 4.5284 3.6993 41 1 2.9291 4.9481 3.2047 42 1 4.6784 6.9428 2.2366 43 1 3.9189 9.1997 3.4977 44 1 5.5760 8.7793 3.9933 45 1 4.0685 12.0748 8.6388 46 1 4.2830 2.4886 2.2475 47 1 2.7128 3.0427 1.6160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107751872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:50 Heat of formation + Delta-G solvation = -100.814273 kcal Electronic energy + Delta-G solvation = -28209.194916 eV Core-core repulsion = 24132.898836 eV Total energy + Delta-G solvation = -4076.296080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.83980 -39.73652 -38.78912 -36.15116 -35.02094 -34.77937 -32.37734 -32.29131 -30.36107 -29.34260 -28.37958 -26.83530 -25.97149 -25.33550 -24.64742 -22.36251 -20.90546 -20.21791 -19.62403 -17.91585 -17.74672 -17.03492 -16.85471 -16.30480 -16.00476 -15.85189 -15.67561 -15.31209 -14.97623 -14.84386 -14.74980 -14.48807 -14.10349 -13.79726 -13.64546 -13.55113 -13.22209 -12.96856 -12.74828 -12.73040 -12.54337 -12.47314 -12.19573 -11.91984 -11.66819 -11.48428 -11.43639 -10.98966 -10.98346 -10.73769 -10.60703 -10.30698 -9.84567 -9.75684 -9.58133 -9.29345 -9.00381 -8.81416 -8.74177 -8.16300 -6.42688 -6.15537 -3.85388 2.22199 2.56930 3.08653 3.21852 3.28122 3.30047 3.33036 3.43057 3.47604 3.85539 4.23334 4.26602 4.47333 4.52460 4.57270 4.68715 4.70151 4.76892 4.79869 4.88475 4.98285 5.06548 5.19268 5.23776 5.25014 5.33139 5.36007 5.44294 5.49452 5.61555 5.69345 5.72271 5.82466 5.90196 5.93783 5.99965 6.18994 6.24202 6.32875 6.45154 6.72399 6.97019 6.99498 7.65370 7.81122 7.85126 8.41248 8.73663 9.29506 10.91863 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021712 B = 0.001931 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.298554 B =14497.281935 C =15211.598759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.740 5.740 3 C 0.509 3.491 4 O -0.512 6.512 5 C 0.036 3.964 6 N -0.515 5.515 7 C 0.018 3.982 8 C 0.061 3.939 9 O -0.370 6.370 10 C 0.112 3.888 11 C -0.165 4.165 12 C 0.139 3.861 13 N -0.730 5.730 14 C 0.532 3.468 15 O -0.521 6.521 16 C -0.152 4.152 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.283 1.283 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.031 3.969 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.401 0.599 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.401 0.599 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.043 0.957 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.149 -27.013 -22.414 35.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.394 5.394 3 C 0.294 3.706 4 O -0.386 6.386 5 C -0.095 4.095 6 N -0.240 5.240 7 C -0.110 4.110 8 C -0.016 4.016 9 O -0.289 6.289 10 C 0.072 3.928 11 C -0.222 4.222 12 C 0.014 3.986 13 N -0.385 5.385 14 C 0.318 3.682 15 O -0.396 6.396 16 C -0.303 4.303 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.090 0.910 20 C -0.136 4.136 21 N -0.504 5.504 22 Si 0.745 3.255 23 H -0.209 1.209 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.097 4.097 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.079 0.921 30 H 0.234 0.766 31 H 0.125 0.875 32 H 0.082 0.918 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.236 0.764 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.485 -26.742 -20.790 33.905 hybrid contribution 1.453 0.728 -1.337 2.105 sum -0.032 -26.013 -22.128 34.152 Atomic orbital electron populations 1.21533 0.79294 1.02223 1.02548 1.45809 1.07945 1.08647 1.76959 1.20573 0.89900 0.83806 0.76312 1.90740 1.69899 1.30911 1.47078 1.21980 0.92608 0.91385 1.03538 1.61847 1.13388 1.18197 1.30546 1.22858 0.87242 0.98920 1.01993 1.22659 1.00406 0.91960 0.86545 1.88112 1.22670 1.83323 1.34782 1.21729 0.81742 0.93919 0.95420 1.22228 1.01203 0.99134 0.99656 1.21159 1.01162 0.82378 0.93884 1.45893 1.68553 1.09839 1.14218 1.20284 0.77082 0.88557 0.82264 1.90692 1.43744 1.70625 1.34538 1.23518 1.04574 0.94178 1.08010 1.85370 1.85223 1.08367 1.04415 1.22841 1.50173 0.94944 1.00347 0.90984 1.24991 0.94871 0.99303 0.94464 1.70012 1.43161 1.35683 1.01507 0.86225 0.79102 0.82557 0.77612 1.20855 1.19965 1.19960 1.22800 1.03277 0.95042 0.88609 0.92158 0.90677 0.92074 0.76633 0.87497 0.91784 0.93643 0.89480 0.88227 0.91732 0.92257 0.90834 0.91007 0.91022 0.90089 0.76418 0.89254 0.89211 0.92191 0.93872 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.42 10.70 59.85 0.64 1.06 16 2 N -0.74 -3.56 5.71 -67.08 -0.38 -3.94 16 3 C 0.51 4.01 7.40 -10.99 -0.08 3.93 16 4 O -0.51 -6.31 14.68 5.55 0.08 -6.23 16 5 C 0.04 0.20 5.45 -4.97 -0.03 0.18 16 6 N -0.51 -4.18 3.79 -235.74 -0.89 -5.08 16 7 C 0.02 0.12 5.65 -3.71 -0.02 0.10 16 8 C 0.06 0.48 6.61 37.21 0.25 0.73 16 9 O -0.37 -4.13 10.23 -35.23 -0.36 -4.49 16 10 C 0.11 1.24 0.78 -90.57 -0.07 1.16 16 11 C -0.16 -1.78 7.94 37.15 0.30 -1.48 16 12 C 0.14 1.90 4.85 -4.04 -0.02 1.88 16 13 N -0.73 -11.11 5.19 -60.29 -0.31 -11.43 16 14 C 0.53 10.66 7.85 -10.99 -0.09 10.58 16 15 O -0.52 -12.47 15.86 5.56 0.09 -12.38 16 16 C -0.15 -3.25 6.16 36.01 0.22 -3.02 16 17 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 18 C -0.53 -15.63 9.50 30.94 0.29 -15.34 16 19 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.70 13.22 55.49 0.73 -25.97 16 22 Si 0.92 21.87 29.55 -169.99 -5.02 16.84 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 26 C 0.03 0.31 4.00 -3.71 -0.01 0.29 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.40 0.62 8.83 -40.82 -0.36 0.26 16 31 H 0.11 0.36 8.04 -51.93 -0.42 -0.06 16 32 H 0.06 0.27 8.12 -51.93 -0.42 -0.15 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.50 6.50 -51.93 -0.34 0.17 16 37 H 0.06 0.62 6.57 -51.93 -0.34 0.28 16 38 H 0.07 0.77 6.13 -51.92 -0.32 0.46 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.40 5.23 6.98 -40.82 -0.29 4.94 16 43 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 44 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 45 H 0.27 7.67 8.31 -40.82 -0.34 7.34 16 46 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 1.17 6.10 -51.93 -0.32 0.85 16 LS Contribution 393.54 15.07 5.93 5.93 Total: -1.00 -38.46 393.54 -8.48 -46.95 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.41 Total: 1.62 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 1.28 Total: 2.09 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.86 Total: -46.41 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.19 Total: -23.10 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -38.46 -8.48 -46.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107751872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.868 kcal (2) G-P(sol) polarization free energy of solvation -38.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds