Wall clock time and date at job start Wed Apr 1 2020 03:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34775 * 120.00507 * 2 1 4 4 O 1.21287 * 119.99659 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00327 * 180.02562 * 3 2 1 6 6 N 1.46908 * 109.46895 * 186.28111 * 5 3 2 7 7 C 1.47015 * 110.99573 * 189.99741 * 6 5 3 8 8 C 1.53102 * 109.25465 * 177.60669 * 7 6 5 9 9 O 1.43020 * 109.25646 * 56.85105 * 8 7 6 10 10 C 1.43015 * 113.73752 * 301.32565 * 9 8 7 11 11 C 1.52994 * 109.54537 * 298.71599 * 10 9 8 12 12 C 1.52998 * 109.50713 * 178.60763 * 10 9 8 13 13 N 1.46499 * 109.47290 * 65.21688 * 12 10 9 14 14 C 1.34773 * 120.00057 * 179.97438 * 13 12 10 15 15 O 1.21281 * 119.99964 * 0.02562 * 14 13 12 16 16 C 1.50703 * 119.99738 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.47013 * 180.02562 * 16 14 13 18 18 C 1.76193 * 100.00048 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00441 * 359.97438 * 18 17 16 20 20 C 1.38802 * 120.00258 * 180.02562 * 18 17 16 21 21 N 1.31629 * 119.99648 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00283 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47141 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.46900 * 299.99349 * 22 20 18 25 25 H 1.48499 * 109.47152 * 59.99434 * 22 20 18 26 26 C 1.47017 * 110.99795 * 66.36166 * 6 5 3 27 27 H 1.08997 * 109.46718 * 59.99761 * 1 2 3 28 28 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46898 * 299.99944 * 1 2 3 30 30 H 0.97001 * 119.99647 * 180.02562 * 2 1 3 31 31 H 1.08996 * 109.47146 * 66.28649 * 5 3 2 32 32 H 1.09000 * 109.46963 * 306.28089 * 5 3 2 33 33 H 1.08997 * 109.50775 * 297.54276 * 7 6 5 34 34 H 1.08999 * 109.50928 * 57.67530 * 7 6 5 35 35 H 1.08993 * 109.50280 * 176.78357 * 8 7 6 36 36 H 1.09003 * 109.50910 * 296.87356 * 8 7 6 37 37 H 1.08999 * 109.47377 * 299.89595 * 11 10 9 38 38 H 1.09009 * 109.47149 * 59.89254 * 11 10 9 39 39 H 1.08995 * 109.47471 * 179.89052 * 11 10 9 40 40 H 1.09005 * 109.47201 * 305.21823 * 12 10 9 41 41 H 1.08998 * 109.47139 * 185.22171 * 12 10 9 42 42 H 0.96995 * 119.99920 * 0.02562 * 13 12 10 43 43 H 1.09001 * 109.46966 * 60.00973 * 16 14 13 44 44 H 1.08991 * 109.47398 * 300.00117 * 16 14 13 45 45 H 0.96998 * 120.00250 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.50528 * 62.46383 * 26 6 5 47 47 H 1.08994 * 109.50781 * 302.32356 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6460 1.1671 -0.0006 6 7 4.1357 2.5438 0.1511 7 6 5.5856 2.6157 -0.0813 8 6 6.0427 4.0729 0.0275 9 8 5.6735 4.5886 1.3094 10 6 4.2681 4.5344 1.5687 11 6 3.5239 5.3826 0.5356 12 6 3.9863 5.0751 2.9720 13 7 4.3308 6.4980 3.0254 14 6 4.1637 7.1892 4.1702 15 8 3.7286 6.6332 5.1564 16 6 4.5186 8.6528 4.2253 17 16 4.1851 9.2925 5.8854 18 6 4.6744 10.9714 5.6704 19 1 5.0456 11.3075 4.7134 20 6 4.5840 11.8620 6.7311 21 7 4.1321 11.4524 7.8976 22 14 5.1021 13.6421 6.5030 23 1 4.9091 14.3809 7.7767 24 1 6.5336 13.6947 6.1117 25 1 4.2749 14.2660 5.4392 26 6 3.7930 3.0820 1.4756 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9500 -0.8401 -0.0004 31 1 4.0089 0.7540 -0.9417 32 1 4.0096 0.5588 0.8276 33 1 6.1042 2.0148 0.6657 34 1 5.8139 2.2361 -1.0772 35 1 7.1253 4.1241 -0.0874 36 1 5.5652 4.6635 -0.7544 37 1 3.8637 6.4162 0.6013 38 1 3.7250 4.9970 -0.4640 39 1 2.4529 5.3390 0.7331 40 1 4.5866 4.5284 3.6993 41 1 2.9291 4.9481 3.2047 42 1 4.6784 6.9428 2.2366 43 1 3.9189 9.1997 3.4977 44 1 5.5760 8.7793 3.9933 45 1 4.0685 12.0748 8.6388 46 1 4.2830 2.4886 2.2475 47 1 2.7128 3.0427 1.6160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107751872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:37:49 Heat of formation + Delta-G solvation = -132.976879 kcal Electronic energy + Delta-G solvation = -28210.589591 eV Core-core repulsion = 24132.898836 eV Total energy + Delta-G solvation = -4077.690755 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.59737 -40.64652 -40.05809 -36.90282 -35.98777 -35.50507 -34.57840 -33.44071 -30.94459 -30.87781 -29.07726 -27.80017 -27.49360 -26.79483 -25.23106 -23.15230 -21.76849 -21.42069 -20.41402 -19.85049 -18.35331 -18.08904 -17.76076 -17.45220 -16.98083 -16.86972 -16.68575 -16.49721 -16.33629 -15.95609 -15.85830 -15.56554 -15.23871 -14.79681 -14.68379 -14.42609 -14.36298 -14.18658 -14.06661 -13.63367 -13.33415 -13.16664 -13.14493 -13.07708 -12.85588 -12.83316 -12.68589 -12.62015 -12.26038 -12.21699 -11.75177 -11.40600 -11.12225 -11.01977 -10.95138 -10.54644 -10.28173 -10.16209 -10.08980 -9.38132 -8.66397 -8.33647 -6.12058 1.26358 1.44767 1.46416 1.56735 1.59880 1.66710 2.10004 2.25262 2.29074 2.64220 2.87949 3.00078 3.32586 3.66124 3.67769 3.83732 3.90196 3.97504 4.00022 4.18755 4.27251 4.29470 4.38106 4.43529 4.47766 4.50217 4.50411 4.58297 4.62784 4.65380 4.69672 4.77518 4.88797 4.94051 4.96243 5.02746 5.30584 5.36559 5.42344 5.47190 5.76052 5.89182 6.20105 6.20529 6.46315 6.61391 7.07086 7.20687 7.33190 8.75438 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.021712 B = 0.001931 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.298554 B =14497.281935 C =15211.598759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.726 5.726 3 C 0.501 3.499 4 O -0.566 6.566 5 C 0.038 3.962 6 N -0.528 5.528 7 C 0.021 3.979 8 C 0.053 3.947 9 O -0.388 6.388 10 C 0.122 3.878 11 C -0.157 4.157 12 C 0.138 3.862 13 N -0.705 5.705 14 C 0.534 3.466 15 O -0.566 6.566 16 C -0.128 4.128 17 S -0.149 6.149 18 C -0.548 4.548 19 H 0.083 0.917 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.278 1.278 24 H -0.262 1.262 25 H -0.262 1.262 26 C 0.039 3.961 27 H 0.047 0.953 28 H 0.109 0.891 29 H 0.042 0.958 30 H 0.419 0.581 31 H 0.138 0.862 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.414 0.586 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.042 0.958 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 -27.794 -25.147 37.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.380 5.380 3 C 0.288 3.712 4 O -0.444 6.444 5 C -0.092 4.092 6 N -0.253 5.253 7 C -0.106 4.106 8 C -0.023 4.023 9 O -0.308 6.308 10 C 0.082 3.918 11 C -0.215 4.215 12 C 0.013 3.987 13 N -0.359 5.359 14 C 0.320 3.680 15 O -0.445 6.445 16 C -0.280 4.280 17 S 0.078 5.922 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.203 1.203 24 H -0.186 1.186 25 H -0.187 1.187 26 C -0.090 4.090 27 H 0.066 0.934 28 H 0.127 0.873 29 H 0.061 0.939 30 H 0.255 0.745 31 H 0.155 0.845 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.252 0.748 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.060 0.940 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.146 -27.598 -23.590 36.307 hybrid contribution 0.952 0.805 -0.600 1.384 sum 1.098 -26.793 -24.191 36.115 Atomic orbital electron populations 1.21588 0.79302 1.03948 1.01025 1.45744 1.08097 1.08833 1.75346 1.21096 0.91009 0.83694 0.75424 1.90721 1.71042 1.32856 1.49800 1.22093 0.90856 0.90408 1.05839 1.61801 1.14562 1.19934 1.28976 1.22903 0.86058 0.98030 1.03635 1.22931 1.01594 0.92851 0.84951 1.88074 1.22056 1.83924 1.36718 1.21495 0.82316 0.94619 0.93394 1.22149 1.00234 0.99252 0.99856 1.21251 1.00612 0.80978 0.95815 1.45654 1.66737 1.10427 1.13118 1.20085 0.76892 0.88177 0.82854 1.90681 1.46142 1.71257 1.36410 1.23355 1.06082 0.94962 1.03553 1.85552 1.85977 1.09836 1.10834 1.23180 1.50339 0.94964 1.01058 0.89904 1.26155 0.94511 1.04688 0.93888 1.70180 1.44372 1.37613 1.02594 0.84982 0.79203 0.75723 0.77942 1.20310 1.18629 1.18667 1.22579 1.01986 0.94371 0.90028 0.93419 0.87288 0.93936 0.74457 0.84451 0.89810 0.93316 0.86715 0.86365 0.91682 0.91979 0.90260 0.92395 0.91974 0.90756 0.74773 0.87196 0.87279 0.91978 0.93967 0.89861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.75 10.70 127.77 1.37 2.12 16 2 N -0.73 -5.89 5.71 -484.52 -2.77 -8.66 16 3 C 0.50 7.41 7.40 87.66 0.65 8.05 16 4 O -0.57 -14.23 14.68 -3.05 -0.04 -14.28 16 5 C 0.04 0.34 5.45 85.55 0.47 0.80 16 6 N -0.53 -7.56 3.79 -899.75 -3.41 -10.97 16 7 C 0.02 0.21 5.65 86.32 0.49 0.70 16 8 C 0.05 0.70 6.61 72.02 0.48 1.18 16 9 O -0.39 -8.06 10.23 -148.98 -1.52 -9.58 16 10 C 0.12 2.62 0.78 -10.76 -0.01 2.61 16 11 C -0.16 -3.31 7.94 71.98 0.57 -2.73 16 12 C 0.14 3.80 4.85 86.38 0.42 4.22 16 13 N -0.70 -21.14 5.19 -463.06 -2.41 -23.54 16 14 C 0.53 21.53 7.85 87.66 0.69 22.22 16 15 O -0.57 -27.96 15.86 -3.03 -0.05 -28.01 16 16 C -0.13 -5.43 6.16 71.24 0.44 -4.99 16 17 S -0.15 -8.59 20.57 -56.49 -1.16 -9.75 16 18 C -0.55 -32.13 9.50 67.96 0.65 -31.49 16 19 H 0.08 4.50 7.80 -2.91 -0.02 4.48 16 20 C 0.01 0.71 5.49 84.86 0.47 1.18 16 21 N -0.91 -57.10 13.22 21.65 0.29 -56.81 16 22 Si 1.00 44.52 29.55 68.60 2.03 46.55 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 26 C 0.04 0.76 4.00 86.31 0.35 1.11 16 27 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.42 0.21 8.83 -92.71 -0.82 -0.61 16 31 H 0.14 0.38 8.04 -2.39 -0.02 0.36 16 32 H 0.08 0.45 8.12 -2.39 -0.02 0.43 16 33 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.11 0.55 8.09 -2.39 -0.02 0.53 16 35 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.06 0.86 6.50 -2.39 -0.02 0.85 16 37 H 0.06 1.23 6.57 -2.39 -0.02 1.21 16 38 H 0.08 1.58 6.13 -2.38 -0.01 1.57 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 41 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.41 10.21 6.98 -92.71 -0.65 9.56 16 43 H 0.11 4.19 8.14 -2.39 -0.02 4.17 16 44 H 0.11 4.19 8.14 -2.40 -0.02 4.17 16 45 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 46 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.08 1.97 6.10 -2.39 -0.01 1.95 16 Total: -1.00 -87.00 393.54 -2.51 -89.51 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -0.47 Total: 20.57 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 7.01 Total: 4.98 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -8.30 Total: -99.99 kcal Atomic # 8 Polarization: -50.25 SS G_CDS: -1.62 Total: -51.87 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.75 kcal Total: -87.00 -2.51 -89.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107751872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.469 kcal (2) G-P(sol) polarization free energy of solvation -87.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds