Wall clock time and date at job start Wed Apr 1 2020 03:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.51284 * 2 1 4 4 N 1.46504 * 109.46886 * 305.00101 * 3 2 1 5 5 C 1.34780 * 119.99759 * 179.97438 * 4 3 2 6 6 O 1.21659 * 119.99980 * 0.02562 * 5 4 3 7 7 C 1.46982 * 120.00092 * 180.02562 * 5 4 3 8 8 C 1.35845 * 125.12009 * 180.02562 * 7 5 4 9 9 C 1.46106 * 106.06541 * 180.02562 * 8 7 5 10 10 C 1.39448 * 135.07295 * 179.97438 * 9 8 7 11 11 N 1.31678 * 120.07462 * 179.97438 * 10 9 8 12 12 C 1.32303 * 122.13852 * 0.02562 * 11 10 9 13 13 C 1.37750 * 121.58622 * 359.97438 * 12 11 10 14 14 C 1.39229 * 118.95782 * 0.02562 * 13 12 11 15 15 O 1.34289 * 134.38057 * 180.34986 * 14 13 12 16 16 C 1.53296 * 109.51470 * 120.10455 * 2 1 3 17 17 N 1.47154 * 108.38445 * 67.62158 * 16 2 1 18 18 C 1.36936 * 120.97949 * 230.51014 * 17 16 2 19 19 H 1.07995 * 119.99610 * 153.32701 * 18 17 16 20 20 C 1.38809 * 120.00133 * 333.33356 * 18 17 16 21 21 N 1.31623 * 120.00306 * 343.54019 * 20 18 17 22 22 Si 1.86801 * 119.99922 * 163.54796 * 20 18 17 23 23 H 1.48501 * 109.47403 * 90.00010 * 22 20 18 24 24 H 1.48503 * 109.46901 * 209.99665 * 22 20 18 25 25 H 1.48500 * 109.47284 * 329.99357 * 22 20 18 26 26 C 1.47148 * 118.03582 * 50.53789 * 17 16 2 27 27 C 1.53299 * 108.38339 * 309.46213 * 26 17 16 28 28 O 1.42961 * 109.22257 * 52.30466 * 27 26 17 29 29 H 1.09003 * 109.46834 * 299.89337 * 1 2 3 30 30 H 1.08996 * 109.47408 * 59.89829 * 1 2 3 31 31 H 1.08998 * 109.47136 * 179.89778 * 1 2 3 32 32 H 1.08996 * 109.47163 * 64.99947 * 3 2 1 33 33 H 1.08997 * 109.47255 * 185.00653 * 3 2 1 34 34 H 0.96997 * 120.00184 * 0.02562 * 4 3 2 35 35 H 1.07996 * 126.96815 * 359.97438 * 8 7 5 36 36 H 1.08001 * 119.96526 * 359.97438 * 10 9 8 37 37 H 1.08003 * 119.20077 * 180.02562 * 12 11 10 38 38 H 1.08010 * 120.51952 * 179.97438 * 13 12 11 39 39 H 1.08998 * 109.68030 * 187.34649 * 16 2 1 40 40 H 1.08999 * 109.67930 * 307.86154 * 16 2 1 41 41 H 0.96994 * 120.00240 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.68536 * 69.18906 * 26 17 16 43 43 H 1.09003 * 109.68127 * 189.74328 * 26 17 16 44 44 H 1.09002 * 109.51189 * 172.22815 * 27 26 17 45 45 H 1.08995 * 109.51157 * 292.32808 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.4574 2.1670 -1.1315 5 6 1.7664 3.4634 -1.3329 6 8 2.5304 4.0314 -0.5754 7 6 1.1804 4.1908 -2.4677 8 6 1.4192 5.4940 -2.7678 9 6 0.6319 5.7843 -3.9639 10 6 0.4325 6.9074 -4.7661 11 7 -0.3676 6.8392 -5.8097 12 6 -1.0047 5.7267 -6.1366 13 6 -0.8647 4.5718 -5.3991 14 6 -0.0319 4.5812 -4.2834 15 8 0.3283 3.6626 -3.3724 16 6 2.0421 -0.7247 1.2500 17 7 1.6960 -2.1503 1.1344 18 6 1.0617 -2.8067 2.1552 19 1 0.4427 -3.6657 1.9425 20 6 1.2143 -2.3679 3.4632 21 7 2.1971 -1.5486 3.7722 22 14 0.0251 -2.9403 4.7852 23 1 0.5383 -4.1876 5.4064 24 1 -0.1047 -1.8870 5.8240 25 1 -1.3040 -3.2011 4.1761 26 6 2.0522 -2.8498 -0.1102 27 6 1.5396 -2.0215 -1.2940 28 8 2.0075 -0.6768 -1.1652 29 1 -0.3633 0.5122 0.8910 30 1 -0.3634 0.5154 -0.8890 31 1 -0.3633 -1.0276 -0.0018 32 1 1.7530 1.9297 0.9313 33 1 3.1273 1.4427 -0.0897 34 1 0.8479 1.7142 -1.7352 35 1 2.0603 6.1772 -2.2307 36 1 0.9349 7.8341 -4.5312 37 1 -1.6494 5.7240 -7.0031 38 1 -1.3935 3.6732 -5.6814 39 1 3.1241 -0.6142 1.3210 40 1 1.5710 -0.3028 2.1378 41 1 2.3039 -1.2423 4.6863 42 1 3.1352 -2.9533 -0.1762 43 1 1.5872 -3.8356 -0.1233 44 1 1.9113 -2.4488 -2.2253 45 1 0.4497 -2.0297 -1.2992 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108051986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:15 Heat of formation + Delta-G solvation = -5.120655 kcal Electronic energy + Delta-G solvation = -30002.397510 eV Core-core repulsion = 25794.807066 eV Total energy + Delta-G solvation = -4207.590444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.06787 -39.97603 -39.31027 -38.75121 -35.20206 -34.42682 -33.34004 -32.27893 -31.77187 -31.30815 -30.23356 -28.01894 -26.88701 -25.99683 -24.52662 -23.74828 -23.28660 -22.28710 -21.32789 -20.84106 -19.11803 -18.45788 -18.34145 -17.13277 -16.89241 -16.34201 -16.01768 -15.93098 -15.63228 -15.18780 -14.89459 -14.80664 -14.53439 -14.24233 -14.05653 -13.80880 -13.77022 -13.58057 -13.48141 -13.12147 -12.84728 -12.58918 -12.05059 -11.98763 -11.65597 -11.25557 -11.08028 -10.87982 -10.77147 -10.71806 -10.51555 -10.37020 -10.31466 -10.15655 -10.01450 -9.83625 -9.61336 -9.18297 -9.08965 -8.75083 -8.58949 -6.78937 -5.89759 -3.33495 0.05328 0.81208 1.39954 1.97634 2.94811 2.98122 3.30357 3.31184 3.38077 3.39138 3.92035 3.96310 4.14072 4.21493 4.39047 4.43814 4.56567 4.81050 4.95309 5.04294 5.22756 5.28067 5.30172 5.38415 5.44042 5.49744 5.59600 5.72501 5.85358 5.85990 5.90510 5.93272 5.97408 6.06549 6.19185 6.30965 6.39413 6.47180 6.57642 6.68530 6.76707 7.00633 7.36331 7.39901 7.46867 7.66143 7.80554 7.94230 8.27989 9.05656 9.68551 10.25746 11.18417 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.002297 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.482658 B =12188.331644 C =12552.997423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.077 3.923 3 C 0.136 3.864 4 N -0.700 5.700 5 C 0.593 3.407 6 O -0.515 6.515 7 C -0.015 4.015 8 C -0.103 4.103 9 C -0.199 4.199 10 C 0.175 3.825 11 N -0.495 5.495 12 C 0.116 3.884 13 C -0.160 4.160 14 C 0.104 3.896 15 O -0.177 6.177 16 C 0.160 3.840 17 N -0.590 5.590 18 C -0.255 4.255 19 H 0.068 0.932 20 C 0.004 3.996 21 N -0.902 5.902 22 Si 0.903 3.097 23 H -0.286 1.286 24 H -0.288 1.288 25 H -0.279 1.279 26 C 0.109 3.891 27 C 0.046 3.954 28 O -0.384 6.384 29 H 0.064 0.936 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.408 0.592 35 H 0.177 0.823 36 H 0.167 0.833 37 H 0.170 0.830 38 H 0.147 0.853 39 H 0.031 0.969 40 H 0.097 0.903 41 H 0.256 0.744 42 H 0.026 0.974 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.430 12.555 -17.452 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 C 0.013 3.987 4 N -0.350 5.350 5 C 0.377 3.623 6 O -0.392 6.392 7 C -0.065 4.065 8 C -0.125 4.125 9 C -0.202 4.202 10 C 0.011 3.989 11 N -0.205 5.205 12 C -0.034 4.034 13 C -0.180 4.180 14 C 0.048 3.952 15 O -0.077 6.077 16 C 0.033 3.967 17 N -0.314 5.314 18 C -0.384 4.384 19 H 0.086 0.914 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.213 1.213 24 H -0.214 1.214 25 H -0.205 1.205 26 C -0.017 4.017 27 C -0.032 4.032 28 O -0.304 6.304 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.245 0.755 35 H 0.195 0.805 36 H 0.184 0.816 37 H 0.187 0.813 38 H 0.165 0.835 39 H 0.049 0.951 40 H 0.115 0.885 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.099 0.901 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.978 13.435 -17.364 22.512 hybrid contribution -0.838 -1.454 1.160 2.040 sum -5.816 11.981 -16.204 20.974 Atomic orbital electron populations 1.22223 0.95693 1.03447 1.00733 1.22562 0.93644 0.90383 0.89793 1.21522 0.99114 0.89669 0.88350 1.46000 1.47889 1.10091 1.31043 1.16631 0.81374 0.82080 0.82262 1.90913 1.35481 1.67989 1.44853 1.22320 0.96736 0.94127 0.93335 1.22692 0.99969 0.94745 0.95046 1.20981 1.02975 0.96595 0.99676 1.22477 0.92175 0.96432 0.87861 1.67814 1.08364 1.27847 1.16450 1.22625 0.96017 0.86668 0.98068 1.21082 1.01194 1.01931 0.93806 1.19881 0.96651 0.87183 0.91491 1.84009 1.52950 1.37632 1.33099 1.21288 0.97914 0.84020 0.93430 1.43984 1.68648 1.04871 1.13872 1.19137 1.21444 1.12546 0.85286 0.91438 1.25052 0.97254 1.00029 0.97144 1.70002 1.29178 1.36800 1.18581 0.86298 0.80930 0.77975 0.81577 1.21296 1.21435 1.20466 1.21605 0.97598 0.95234 0.87310 1.23046 0.98335 0.82998 0.98800 1.87822 1.72896 1.25934 1.43745 0.91719 0.94004 0.90597 0.89301 0.90117 0.75511 0.80522 0.81555 0.81314 0.83472 0.95110 0.88479 0.93378 0.95590 0.91990 0.90129 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 7.87 37.16 0.29 -2.41 16 2 C 0.08 1.39 0.78 -90.47 -0.07 1.31 16 3 C 0.14 2.22 4.85 -4.04 -0.02 2.20 16 4 N -0.70 -9.97 5.19 -61.52 -0.32 -10.28 16 5 C 0.59 8.60 7.80 -12.72 -0.10 8.50 16 6 O -0.51 -8.79 16.83 5.23 0.09 -8.70 16 7 C -0.02 -0.19 7.07 -36.90 -0.26 -0.45 16 8 C -0.10 -1.10 10.80 -37.29 -0.40 -1.50 16 9 C -0.20 -2.02 6.43 -105.22 -0.68 -2.69 16 10 C 0.17 1.50 11.28 -17.17 -0.19 1.31 16 11 N -0.49 -4.54 10.34 -13.00 -0.13 -4.67 16 12 C 0.12 0.86 11.13 -17.53 -0.20 0.67 16 13 C -0.16 -1.28 10.13 -39.39 -0.40 -1.68 16 14 C 0.10 1.10 7.48 -38.14 -0.29 0.82 16 15 O -0.18 -2.11 10.26 3.68 0.04 -2.07 16 16 C 0.16 3.61 4.10 -3.53 -0.01 3.60 16 17 N -0.59 -14.01 2.57 -171.83 -0.44 -14.45 16 18 C -0.25 -6.64 9.65 -15.06 -0.15 -6.78 16 19 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 20 C 0.00 0.11 4.95 -17.43 -0.09 0.02 16 21 N -0.90 -25.17 11.14 55.49 0.62 -24.55 16 22 Si 0.90 20.91 29.58 -169.99 -5.03 15.88 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C 0.11 2.18 6.73 -3.53 -0.02 2.16 16 27 C 0.05 0.78 6.60 37.31 0.25 1.02 16 28 O -0.38 -6.91 10.18 -35.23 -0.36 -7.27 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.04 0.58 6.57 -51.93 -0.34 0.24 16 31 H 0.08 1.38 6.11 -51.93 -0.32 1.06 16 32 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.41 5.36 6.70 -40.82 -0.27 5.09 16 35 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.17 0.69 8.06 -52.48 -0.42 0.27 16 38 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 39 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 2.41 6.16 -51.93 -0.32 2.09 16 41 H 0.26 6.94 8.31 -40.82 -0.34 6.61 16 42 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.79 6.25 -51.93 -0.32 0.47 16 LS Contribution 372.09 15.07 5.61 5.61 Total: -1.00 -31.15 372.09 -8.03 -39.18 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.77 Total: 5.25 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -2.33 Total: 6.09 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.28 Total: -53.96 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: -0.23 Total: -18.04 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.88 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.15 -8.03 -39.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108051986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.056 kcal (2) G-P(sol) polarization free energy of solvation -31.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds