Wall clock time and date at job start Wed Apr 1 2020 03:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.51284 * 2 1 4 4 N 1.46504 * 109.46886 * 305.00101 * 3 2 1 5 5 C 1.34780 * 119.99759 * 179.97438 * 4 3 2 6 6 O 1.21659 * 119.99980 * 0.02562 * 5 4 3 7 7 C 1.46982 * 120.00092 * 180.02562 * 5 4 3 8 8 C 1.35845 * 125.12009 * 180.02562 * 7 5 4 9 9 C 1.46106 * 106.06541 * 180.02562 * 8 7 5 10 10 C 1.39448 * 135.07295 * 179.97438 * 9 8 7 11 11 N 1.31678 * 120.07462 * 179.97438 * 10 9 8 12 12 C 1.32303 * 122.13852 * 0.02562 * 11 10 9 13 13 C 1.37750 * 121.58622 * 359.97438 * 12 11 10 14 14 C 1.39229 * 118.95782 * 0.02562 * 13 12 11 15 15 O 1.34289 * 134.38057 * 180.34986 * 14 13 12 16 16 C 1.53296 * 109.51470 * 120.10455 * 2 1 3 17 17 N 1.47154 * 108.38445 * 67.62158 * 16 2 1 18 18 C 1.36936 * 120.97949 * 230.51014 * 17 16 2 19 19 H 1.07995 * 119.99610 * 153.32701 * 18 17 16 20 20 C 1.38809 * 120.00133 * 333.33356 * 18 17 16 21 21 N 1.31623 * 120.00306 * 343.54019 * 20 18 17 22 22 Si 1.86801 * 119.99922 * 163.54796 * 20 18 17 23 23 H 1.48501 * 109.47403 * 90.00010 * 22 20 18 24 24 H 1.48503 * 109.46901 * 209.99665 * 22 20 18 25 25 H 1.48500 * 109.47284 * 329.99357 * 22 20 18 26 26 C 1.47148 * 118.03582 * 50.53789 * 17 16 2 27 27 C 1.53299 * 108.38339 * 309.46213 * 26 17 16 28 28 O 1.42961 * 109.22257 * 52.30466 * 27 26 17 29 29 H 1.09003 * 109.46834 * 299.89337 * 1 2 3 30 30 H 1.08996 * 109.47408 * 59.89829 * 1 2 3 31 31 H 1.08998 * 109.47136 * 179.89778 * 1 2 3 32 32 H 1.08996 * 109.47163 * 64.99947 * 3 2 1 33 33 H 1.08997 * 109.47255 * 185.00653 * 3 2 1 34 34 H 0.96997 * 120.00184 * 0.02562 * 4 3 2 35 35 H 1.07996 * 126.96815 * 359.97438 * 8 7 5 36 36 H 1.08001 * 119.96526 * 359.97438 * 10 9 8 37 37 H 1.08003 * 119.20077 * 180.02562 * 12 11 10 38 38 H 1.08010 * 120.51952 * 179.97438 * 13 12 11 39 39 H 1.08998 * 109.68030 * 187.34649 * 16 2 1 40 40 H 1.08999 * 109.67930 * 307.86154 * 16 2 1 41 41 H 0.96994 * 120.00240 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.68536 * 69.18906 * 26 17 16 43 43 H 1.09003 * 109.68127 * 189.74328 * 26 17 16 44 44 H 1.09002 * 109.51189 * 172.22815 * 27 26 17 45 45 H 1.08995 * 109.51157 * 292.32808 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4421 0.0000 4 7 1.4574 2.1670 -1.1315 5 6 1.7664 3.4634 -1.3329 6 8 2.5304 4.0314 -0.5754 7 6 1.1804 4.1908 -2.4677 8 6 1.4192 5.4940 -2.7678 9 6 0.6319 5.7843 -3.9639 10 6 0.4325 6.9074 -4.7661 11 7 -0.3676 6.8392 -5.8097 12 6 -1.0047 5.7267 -6.1366 13 6 -0.8647 4.5718 -5.3991 14 6 -0.0319 4.5812 -4.2834 15 8 0.3283 3.6626 -3.3724 16 6 2.0421 -0.7247 1.2500 17 7 1.6960 -2.1503 1.1344 18 6 1.0617 -2.8067 2.1552 19 1 0.4427 -3.6657 1.9425 20 6 1.2143 -2.3679 3.4632 21 7 2.1971 -1.5486 3.7722 22 14 0.0251 -2.9403 4.7852 23 1 0.5383 -4.1876 5.4064 24 1 -0.1047 -1.8870 5.8240 25 1 -1.3040 -3.2011 4.1761 26 6 2.0522 -2.8498 -0.1102 27 6 1.5396 -2.0215 -1.2940 28 8 2.0075 -0.6768 -1.1652 29 1 -0.3633 0.5122 0.8910 30 1 -0.3634 0.5154 -0.8890 31 1 -0.3633 -1.0276 -0.0018 32 1 1.7530 1.9297 0.9313 33 1 3.1273 1.4427 -0.0897 34 1 0.8479 1.7142 -1.7352 35 1 2.0603 6.1772 -2.2307 36 1 0.9349 7.8341 -4.5312 37 1 -1.6494 5.7240 -7.0031 38 1 -1.3935 3.6732 -5.6814 39 1 3.1241 -0.6142 1.3210 40 1 1.5710 -0.3028 2.1378 41 1 2.3039 -1.2423 4.6863 42 1 3.1352 -2.9533 -0.1762 43 1 1.5872 -3.8356 -0.1233 44 1 1.9113 -2.4488 -2.2253 45 1 0.4497 -2.0297 -1.2992 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108051986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:14 Heat of formation + Delta-G solvation = -26.034723 kcal Electronic energy + Delta-G solvation = -30003.304412 eV Core-core repulsion = 25794.807066 eV Total energy + Delta-G solvation = -4208.497346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.84830 -41.21714 -40.34114 -39.85279 -36.66444 -36.06157 -34.11715 -33.43737 -33.20603 -32.68148 -31.04733 -29.60207 -28.21747 -27.64409 -25.51283 -24.99069 -24.50419 -23.23958 -22.68626 -21.92780 -20.47525 -19.69525 -19.06285 -18.92585 -17.77068 -17.50579 -17.12896 -17.07496 -16.72718 -16.62807 -16.12423 -15.99844 -15.62222 -15.54383 -15.47926 -15.23576 -14.75999 -14.61591 -14.49601 -14.38687 -14.28825 -14.01323 -13.50885 -13.20579 -12.94789 -12.78925 -12.65107 -12.56320 -12.43432 -12.18025 -11.97737 -11.89274 -11.66914 -11.52423 -11.13611 -10.79999 -10.77628 -10.58114 -10.51237 -10.35483 -9.51547 -8.71580 -7.90247 -5.37079 -0.70092 0.11320 0.58922 1.13973 1.45489 1.47736 1.56531 1.88032 1.90704 2.47552 2.67313 2.75270 3.14933 3.25039 3.31741 3.46987 3.47930 3.73492 3.80231 3.89077 3.97559 4.06822 4.13620 4.29090 4.39774 4.43989 4.51864 4.56956 4.62737 4.65967 4.69142 4.74501 4.83864 4.92735 4.99366 5.01437 5.07501 5.13353 5.19577 5.31052 5.33237 5.52798 5.61517 5.67490 6.25301 6.28627 6.34978 6.81513 6.84696 7.06960 7.75705 8.29857 9.15606 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.002297 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.482658 B =12188.331644 C =12552.997423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.092 3.908 3 C 0.146 3.854 4 N -0.693 5.693 5 C 0.597 3.403 6 O -0.548 6.548 7 C -0.043 4.043 8 C -0.083 4.083 9 C -0.216 4.216 10 C 0.178 3.822 11 N -0.512 5.512 12 C 0.123 3.877 13 C -0.163 4.163 14 C 0.086 3.914 15 O -0.185 6.185 16 C 0.168 3.832 17 N -0.607 5.607 18 C -0.259 4.259 19 H 0.073 0.927 20 C -0.049 4.049 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.287 1.287 24 H -0.294 1.294 25 H -0.268 1.268 26 C 0.102 3.898 27 C 0.052 3.948 28 O -0.387 6.387 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.416 0.584 35 H 0.191 0.809 36 H 0.193 0.807 37 H 0.204 0.796 38 H 0.172 0.828 39 H -0.003 1.003 40 H 0.069 0.931 41 H 0.251 0.749 42 H 0.013 0.987 43 H 0.072 0.928 44 H 0.117 0.883 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.407 13.195 -20.162 25.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.051 3.949 3 C 0.022 3.978 4 N -0.343 5.343 5 C 0.383 3.617 6 O -0.428 6.428 7 C -0.092 4.092 8 C -0.105 4.105 9 C -0.219 4.219 10 C 0.015 3.985 11 N -0.223 5.223 12 C -0.026 4.026 13 C -0.183 4.183 14 C 0.031 3.969 15 O -0.086 6.086 16 C 0.041 3.959 17 N -0.331 5.331 18 C -0.389 4.389 19 H 0.090 0.910 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.793 3.207 23 H -0.214 1.214 24 H -0.220 1.220 25 H -0.192 1.192 26 C -0.023 4.023 27 C -0.025 4.025 28 O -0.306 6.306 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.254 0.746 35 H 0.208 0.792 36 H 0.209 0.791 37 H 0.221 0.779 38 H 0.189 0.811 39 H 0.015 0.985 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.031 0.969 43 H 0.090 0.910 44 H 0.134 0.866 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.978 14.058 -20.126 25.522 hybrid contribution -0.221 -1.630 1.849 2.475 sum -7.198 12.428 -18.277 23.245 Atomic orbital electron populations 1.22124 0.94101 1.02982 1.02007 1.22217 0.94604 0.90463 0.87610 1.21224 0.98414 0.89057 0.89103 1.45801 1.47924 1.10138 1.30481 1.16789 0.80707 0.81760 0.82413 1.90889 1.36984 1.68605 1.46294 1.21826 0.98859 0.94547 0.93958 1.22969 0.98729 0.94160 0.94660 1.21103 1.03566 0.97290 0.99954 1.22910 0.91631 0.96871 0.87135 1.67915 1.08892 1.28745 1.16704 1.23255 0.95168 0.85790 0.98380 1.21448 1.00757 1.03204 0.92865 1.20388 0.97329 0.87204 0.91975 1.83954 1.53139 1.38087 1.33397 1.21057 0.95666 0.84342 0.94849 1.44236 1.68669 1.05537 1.14643 1.19475 1.21032 1.12378 0.86012 0.90970 1.25782 0.98743 1.00711 0.99170 1.70165 1.30966 1.38463 1.18521 0.85313 0.79413 0.77033 0.78909 1.21352 1.22040 1.19235 1.21811 0.97083 0.96308 0.87115 1.23110 0.99069 0.81747 0.98565 1.87835 1.73226 1.26553 1.43020 0.92253 0.90910 0.91828 0.89806 0.91387 0.74632 0.79188 0.79053 0.77907 0.81100 0.98539 0.91240 0.93999 0.96869 0.90970 0.86561 0.92181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 7.87 71.98 0.57 -4.40 16 2 C 0.09 3.32 0.78 -10.69 -0.01 3.31 16 3 C 0.15 4.87 4.85 86.38 0.42 5.29 16 4 N -0.69 -19.53 5.19 -466.79 -2.42 -21.96 16 5 C 0.60 17.38 7.80 86.53 0.67 18.05 16 6 O -0.55 -19.09 16.83 -4.22 -0.07 -19.17 16 7 C -0.04 -1.04 7.07 24.01 0.17 -0.87 16 8 C -0.08 -1.70 10.80 23.76 0.26 -1.44 16 9 C -0.22 -4.01 6.43 -20.25 -0.13 -4.14 16 10 C 0.18 2.65 11.28 85.01 0.96 3.61 16 11 N -0.51 -7.98 10.34 -195.04 -2.02 -9.99 16 12 C 0.12 1.43 11.13 84.51 0.94 2.37 16 13 C -0.16 -2.16 10.13 22.39 0.23 -1.93 16 14 C 0.09 1.68 7.48 23.21 0.17 1.86 16 15 O -0.19 -4.19 10.26 -9.76 -0.10 -4.29 16 16 C 0.17 7.86 4.10 86.35 0.35 8.22 16 17 N -0.61 -29.27 2.57 -697.55 -1.79 -31.06 16 18 C -0.26 -13.63 9.65 84.03 0.81 -12.82 16 19 H 0.07 3.66 7.88 -2.91 -0.02 3.63 16 20 C -0.05 -2.63 4.95 84.86 0.42 -2.21 16 21 N -0.94 -54.20 11.14 21.65 0.24 -53.96 16 22 Si 0.97 43.60 29.58 68.60 2.03 45.63 16 23 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 C 0.10 4.04 6.73 86.36 0.58 4.63 16 27 C 0.05 1.65 6.60 72.08 0.48 2.13 16 28 O -0.39 -13.46 10.18 -148.98 -1.52 -14.98 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.07 1.88 6.57 -2.39 -0.02 1.86 16 31 H 0.06 2.22 6.11 -2.39 -0.01 2.21 16 32 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.42 10.39 6.70 -92.71 -0.62 9.77 16 35 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 36 H 0.19 1.66 8.06 -2.91 -0.02 1.63 16 37 H 0.20 0.81 8.06 -2.91 -0.02 0.78 16 38 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 40 H 0.07 3.63 6.16 -2.39 -0.01 3.62 16 41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.07 2.67 7.96 -2.39 -0.02 2.65 16 44 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 45 H 0.06 1.79 6.25 -2.39 -0.01 1.78 16 Total: -1.00 -69.20 372.09 1.66 -67.54 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.42 Total: 20.58 kcal Atomic # 6 Polarization: 14.77 SS G_CDS: 6.89 Total: 21.66 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -5.99 Total: -116.97 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -1.69 Total: -38.44 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -69.20 1.66 -67.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108051986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.504 kcal (2) G-P(sol) polarization free energy of solvation -69.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds