Wall clock time and date at job start Wed Apr 1 2020 03:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.55147 * 2 1 4 4 N 1.46499 * 109.47060 * 60.13157 * 3 2 1 5 5 C 1.34782 * 119.99795 * 180.02562 * 4 3 2 6 6 O 1.21625 * 119.99742 * 359.97438 * 5 4 3 7 7 C 1.47161 * 119.99945 * 179.97438 * 5 4 3 8 8 C 1.35757 * 125.12968 * 179.71731 * 7 5 4 9 9 C 1.46424 * 106.13713 * 179.85880 * 8 7 5 10 10 N 1.32944 * 133.88220 * 180.14384 * 9 8 7 11 11 C 1.31439 * 121.37914 * 180.27832 * 10 9 8 12 12 C 1.38859 * 121.18557 * 359.97438 * 11 10 9 13 13 C 1.38211 * 119.71095 * 359.97438 * 12 11 10 14 14 C 1.39302 * 118.33537 * 0.02562 * 13 12 11 15 15 O 1.34580 * 133.42464 * 180.02562 * 14 13 12 16 16 C 1.53290 * 109.50882 * 239.87287 * 2 1 3 17 17 N 1.47232 * 108.40967 * 292.38059 * 16 2 1 18 18 C 1.36937 * 121.03256 * 129.46000 * 17 16 2 19 19 H 1.07999 * 119.99830 * 333.77469 * 18 17 16 20 20 C 1.38814 * 119.99671 * 153.77042 * 18 17 16 21 21 N 1.31617 * 119.99660 * 160.02496 * 20 18 17 22 22 Si 1.86793 * 120.00266 * 340.02129 * 20 18 17 23 23 H 1.48503 * 109.46760 * 91.88567 * 22 20 18 24 24 H 1.48497 * 109.47347 * 211.88792 * 22 20 18 25 25 H 1.48498 * 109.47201 * 331.89168 * 22 20 18 26 26 C 1.47155 * 117.98347 * 309.49012 * 17 16 2 27 27 C 1.53294 * 108.41729 * 50.51829 * 26 17 16 28 28 O 1.42960 * 109.50970 * 120.12955 * 2 1 3 29 29 H 1.08996 * 109.46656 * 299.86994 * 1 2 3 30 30 H 1.08998 * 109.46877 * 59.87220 * 1 2 3 31 31 H 1.09001 * 109.46700 * 179.87487 * 1 2 3 32 32 H 1.09004 * 109.46468 * 180.12711 * 3 2 1 33 33 H 1.08996 * 109.47418 * 300.12428 * 3 2 1 34 34 H 0.96992 * 120.00094 * 359.97438 * 4 3 2 35 35 H 1.07996 * 126.92844 * 359.97438 * 8 7 5 36 36 H 1.07998 * 119.40697 * 179.97438 * 11 10 9 37 37 H 1.08003 * 120.14482 * 180.02562 * 12 11 10 38 38 H 1.08009 * 120.83072 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.68378 * 52.10405 * 16 2 1 40 40 H 1.09000 * 109.68200 * 172.65533 * 16 2 1 41 41 H 0.97002 * 120.00062 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.68049 * 290.77118 * 26 17 16 43 43 H 1.09003 * 109.67731 * 170.25941 * 26 17 16 44 44 H 1.08998 * 109.51349 * 67.59796 * 27 26 17 45 45 H 1.08996 * 109.51070 * 187.70400 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0421 1.4418 0.0000 4 7 1.5573 2.1321 1.1977 5 6 1.8848 3.4220 1.4110 6 8 2.5831 4.0127 0.6093 7 6 1.3974 4.1157 2.6139 8 6 1.6669 5.4071 2.9341 9 6 0.9788 5.6646 4.2007 10 7 0.8721 6.7274 4.9920 11 6 0.1765 6.6839 6.1065 12 6 -0.4761 5.5238 6.5019 13 6 -0.3975 4.3911 5.7138 14 6 0.3439 4.4551 4.5362 15 8 0.6186 3.5634 3.5663 16 6 2.0420 -0.7252 -1.2497 17 7 1.6959 -2.1516 -1.1341 18 6 1.0612 -2.8090 -2.1540 19 1 0.4409 -2.2599 -2.8468 20 6 1.2152 -4.1811 -2.2972 21 7 0.3375 -4.8727 -2.9927 22 14 2.6681 -5.0459 -1.5032 23 1 2.2821 -5.5212 -0.1503 24 1 3.0712 -6.2052 -2.3389 25 1 3.8059 -4.0985 -1.3890 26 6 2.0522 -2.8498 0.1114 27 6 1.5396 -2.0211 1.2948 28 8 2.0075 -0.6764 1.1655 29 1 -0.3632 0.5118 0.8911 30 1 -0.3633 0.5158 -0.8888 31 1 -0.3633 -1.0277 -0.0022 32 1 3.1321 1.4401 -0.0023 33 1 1.6777 1.9568 -0.8888 34 1 1.0001 1.6612 1.8369 35 1 2.2663 6.1045 2.3678 36 1 0.1115 7.5663 6.7257 37 1 -1.0434 5.5069 7.4208 38 1 -0.8983 3.4791 6.0038 39 1 1.5704 -0.3041 -2.1376 40 1 3.1241 -0.6148 -1.3208 41 1 0.4453 -5.8314 -3.0932 42 1 3.1352 -2.9533 0.1773 43 1 1.5877 -3.8358 0.1251 44 1 0.4497 -2.0284 1.2994 45 1 1.9106 -2.4485 2.2263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108078359.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:19 Heat of formation + Delta-G solvation = 2.347307 kcal Electronic energy + Delta-G solvation = -29901.437345 eV Core-core repulsion = 25694.170736 eV Total energy + Delta-G solvation = -4207.266609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.10043 -40.14355 -39.37488 -38.91736 -35.44613 -34.56524 -33.64343 -32.38837 -31.93687 -31.49762 -30.44596 -28.48469 -27.09190 -26.24748 -24.73747 -23.80606 -23.22799 -22.33933 -21.54235 -20.95857 -19.40887 -18.72521 -18.12650 -17.13683 -16.98996 -16.88382 -16.36117 -16.10913 -15.78550 -15.56550 -15.03186 -14.72138 -14.44723 -14.23263 -14.05963 -13.92806 -13.77704 -13.64499 -13.51753 -13.40026 -13.06810 -12.88774 -12.48326 -12.39764 -11.94251 -11.66569 -11.51671 -11.10585 -11.03492 -10.88973 -10.67356 -10.38961 -10.34663 -9.95449 -9.75889 -9.59120 -9.49057 -9.47746 -9.35082 -9.02417 -8.64386 -7.09337 -6.04610 -3.42262 0.01630 0.64397 1.34576 1.92636 2.75974 2.83080 3.22988 3.26229 3.42205 3.44657 3.62035 3.93879 3.94702 4.25192 4.37162 4.43041 4.49673 4.64839 4.71260 4.88075 5.02888 5.12081 5.13044 5.23013 5.30463 5.31397 5.45466 5.60047 5.67277 5.70454 5.74776 5.75551 5.82425 5.89977 5.99423 6.11087 6.15953 6.20397 6.39276 6.40639 6.42314 6.51201 6.67175 7.21985 7.36547 7.53334 7.77713 7.79952 8.20506 8.78109 9.59252 9.94781 11.10807 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.025506 B = 0.002210 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.520331 B =12669.139041 C =13158.518720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.086 3.914 3 C 0.135 3.865 4 N -0.699 5.699 5 C 0.596 3.404 6 O -0.512 6.512 7 C 0.001 3.999 8 C -0.107 4.107 9 C 0.063 3.937 10 N -0.440 5.440 11 C 0.101 3.899 12 C -0.143 4.143 13 C -0.059 4.059 14 C 0.017 3.983 15 O -0.176 6.176 16 C 0.131 3.869 17 N -0.603 5.603 18 C -0.261 4.261 19 H 0.089 0.911 20 C 0.024 3.976 21 N -0.906 5.906 22 Si 0.884 3.116 23 H -0.289 1.289 24 H -0.302 1.302 25 H -0.270 1.270 26 C 0.089 3.911 27 C 0.046 3.954 28 O -0.380 6.380 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.411 0.589 35 H 0.179 0.821 36 H 0.168 0.832 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.075 0.925 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.034 0.966 43 H 0.081 0.919 44 H 0.057 0.943 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.168 19.048 18.899 26.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.045 3.955 3 C 0.012 3.988 4 N -0.350 5.350 5 C 0.380 3.620 6 O -0.389 6.389 7 C -0.051 4.051 8 C -0.128 4.128 9 C -0.066 4.066 10 N -0.149 5.149 11 C -0.065 4.065 12 C -0.163 4.163 13 C -0.086 4.086 14 C -0.033 4.033 15 O -0.076 6.076 16 C 0.004 3.996 17 N -0.328 5.328 18 C -0.389 4.389 19 H 0.106 0.894 20 C -0.175 4.175 21 N -0.548 5.548 22 Si 0.715 3.285 23 H -0.216 1.216 24 H -0.230 1.230 25 H -0.196 1.196 26 C -0.037 4.037 27 C -0.032 4.032 28 O -0.300 6.300 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.247 0.753 35 H 0.197 0.803 36 H 0.185 0.815 37 H 0.170 0.830 38 H 0.166 0.834 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.247 19.803 17.999 26.790 hybrid contribution -0.059 -1.775 0.878 1.981 sum -1.306 18.028 18.877 26.135 Atomic orbital electron populations 1.22281 0.94933 1.04132 1.01280 1.22243 0.94115 0.90256 0.88933 1.21526 1.00382 0.89903 0.86973 1.45862 1.52371 1.10775 1.25970 1.16604 0.80713 0.82020 0.82710 1.90908 1.37659 1.66323 1.44059 1.22206 0.97730 0.93554 0.91616 1.22510 1.01107 0.95117 0.94111 1.20656 0.99677 0.89931 0.96339 1.67050 1.15706 1.28280 1.03853 1.22878 0.92985 0.98123 0.92468 1.22095 1.00697 0.92760 1.00777 1.20550 0.97404 1.00559 0.90053 1.20579 1.01086 0.89468 0.92206 1.84029 1.57448 1.38115 1.28018 1.21471 0.97814 0.85536 0.94750 1.44316 1.69269 1.05664 1.13529 1.18884 1.21829 0.91102 1.07056 0.89357 1.25247 0.97960 0.96500 0.97830 1.69817 1.34288 1.07118 1.43620 0.86971 0.85140 0.78901 0.77517 1.21644 1.23036 1.19555 1.22033 0.98243 0.96808 0.86610 1.23099 0.99016 0.82329 0.98755 1.87840 1.72843 1.26222 1.43049 0.93353 0.91595 0.90044 0.90038 0.89270 0.75251 0.80341 0.81506 0.83014 0.83361 0.90671 0.94700 0.92637 0.94770 0.90063 0.92515 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 7.92 37.16 0.29 -2.17 16 2 C 0.09 1.31 0.76 -90.47 -0.07 1.25 16 3 C 0.14 1.81 4.82 -4.04 -0.02 1.79 16 4 N -0.70 -8.64 5.15 -61.47 -0.32 -8.96 16 5 C 0.60 7.80 7.80 -12.64 -0.10 7.70 16 6 O -0.51 -7.96 16.83 5.26 0.09 -7.87 16 7 C 0.00 0.01 7.07 -36.85 -0.26 -0.25 16 8 C -0.11 -1.22 10.81 -37.18 -0.40 -1.62 16 9 C 0.06 0.72 7.52 -83.18 -0.63 0.10 16 10 N -0.44 -4.66 10.41 -9.87 -0.10 -4.76 16 11 C 0.10 0.70 11.17 -17.49 -0.20 0.50 16 12 C -0.14 -0.77 10.09 -39.36 -0.40 -1.17 16 13 C -0.06 -0.42 10.19 -39.20 -0.40 -0.82 16 14 C 0.02 0.18 7.42 -38.27 -0.28 -0.11 16 15 O -0.18 -1.97 10.28 3.40 0.03 -1.94 16 16 C 0.13 2.42 5.41 -3.49 -0.02 2.41 16 17 N -0.60 -13.53 2.35 -171.76 -0.40 -13.93 16 18 C -0.26 -6.92 10.10 -15.06 -0.15 -7.07 16 19 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 20 C 0.02 0.67 5.26 -17.43 -0.09 0.57 16 21 N -0.91 -26.89 13.97 55.49 0.78 -26.11 16 22 Si 0.88 21.76 24.28 -169.99 -4.13 17.63 16 23 H -0.29 -6.78 6.58 56.52 0.37 -6.41 16 24 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 25 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 26 C 0.09 1.84 4.38 -3.53 -0.02 1.83 16 27 C 0.05 0.77 6.60 37.31 0.25 1.02 16 28 O -0.38 -6.23 9.97 -35.23 -0.35 -6.58 16 29 H 0.05 0.60 6.88 -51.93 -0.36 0.25 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.41 6.11 -51.93 -0.32 1.09 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.41 4.73 6.92 -40.82 -0.28 4.44 16 35 H 0.18 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.15 0.27 8.06 -52.48 -0.42 -0.15 16 38 H 0.15 0.69 8.06 -52.48 -0.42 0.27 16 39 H 0.07 1.34 7.96 -51.93 -0.41 0.93 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.03 0.73 6.86 -51.93 -0.36 0.37 16 43 H 0.08 1.82 4.60 -51.93 -0.24 1.58 16 44 H 0.06 0.94 6.25 -51.93 -0.32 0.61 16 45 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 365.69 15.07 5.51 5.51 Total: -1.00 -32.77 365.69 -7.10 -39.87 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -5.72 Total: 3.19 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -2.49 Total: 3.94 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.05 Total: -53.76 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: -0.23 Total: -16.39 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.13 Total: 17.63 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.77 -7.10 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108078359.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.217 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds