Wall clock time and date at job start Wed Apr 1 2020 03:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38125 * 126.29134 * 2 1 4 4 C 1.47281 * 126.42987 * 0.02653 * 3 2 1 5 5 O 1.21527 * 120.00324 * 359.97438 * 4 3 2 6 6 O 1.34756 * 119.99862 * 179.97438 * 4 3 2 7 7 C 1.45206 * 117.00055 * 179.97438 * 6 4 3 8 8 C 1.52992 * 109.47531 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47482 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47212 * 179.97438 * 9 8 7 11 11 C 1.35764 * 119.61995 * 90.00106 * 10 9 8 12 12 C 1.35349 * 120.69993 * 179.97438 * 11 10 9 13 13 C 1.40198 * 119.94836 * 0.02562 * 12 11 10 14 14 C 1.36408 * 119.26538 * 0.02562 * 13 12 11 15 15 C 1.34656 * 119.62335 * 269.73025 * 10 9 8 16 16 O 1.22061 * 119.98888 * 359.97438 * 15 10 9 17 17 C 1.41347 * 107.14146 * 180.27886 * 3 2 1 18 18 N 1.30429 * 108.01131 * 359.56318 * 17 3 2 19 19 N 1.34218 * 126.29570 * 180.02562 * 2 1 3 20 20 C 1.46499 * 125.74437 * 359.94335 * 19 2 1 21 21 C 1.50692 * 109.47099 * 90.00085 * 20 19 2 22 22 H 1.08001 * 120.00310 * 0.02562 * 21 20 19 23 23 C 1.37881 * 119.99996 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99898 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00146 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47073 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47462 * 119.99962 * 25 23 21 28 28 H 1.48501 * 109.47113 * 240.00483 * 25 23 21 29 29 H 1.09001 * 109.46951 * 89.97183 * 1 2 3 30 30 H 1.08993 * 109.46723 * 209.97027 * 1 2 3 31 31 H 1.08994 * 109.46771 * 329.97280 * 1 2 3 32 32 H 1.09002 * 109.47266 * 59.99691 * 7 6 4 33 33 H 1.09001 * 109.46670 * 299.99912 * 7 6 4 34 34 H 1.09002 * 109.47103 * 59.99585 * 8 7 6 35 35 H 1.08998 * 109.46862 * 300.00397 * 8 7 6 36 36 H 1.09002 * 109.47153 * 59.99783 * 9 8 7 37 37 H 1.09001 * 109.46832 * 299.99974 * 9 8 7 38 38 H 1.07993 * 119.65277 * 359.97438 * 11 10 9 39 39 H 1.07993 * 120.02897 * 179.97438 * 12 11 10 40 40 H 1.07997 * 120.37238 * 179.97438 * 13 12 11 41 41 H 1.07998 * 120.34721 * 180.02562 * 14 13 12 42 42 H 1.08001 * 125.99179 * 179.73461 * 17 3 2 43 43 H 1.09005 * 109.46761 * 210.00262 * 20 19 2 44 44 H 1.08997 * 109.47143 * 329.99966 * 20 19 2 45 45 H 0.97001 * 119.99666 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5197 0.0005 5 8 0.7018 2.7873 0.0006 6 8 2.8015 3.5096 0.0010 7 6 2.2982 4.8717 0.0009 8 6 3.4745 5.8500 0.0009 9 6 2.9442 7.2852 0.0002 10 7 4.0706 8.2220 0.0007 11 6 4.5873 8.6508 -1.1793 12 6 5.6274 9.5165 -1.2043 13 6 6.1823 9.9789 -0.0027 14 6 5.6624 9.5461 1.1819 15 6 4.5781 8.6521 1.1715 16 8 4.0992 8.2617 2.2241 17 6 3.6599 0.6496 -0.0066 18 7 3.6340 -0.6544 -0.0008 19 7 2.3016 -1.0818 -0.0005 20 6 1.8499 -2.4754 0.0001 21 6 1.6939 -2.9534 -1.4205 22 1 1.9100 -2.2861 -2.2417 23 6 1.2762 -4.2431 -1.6719 24 7 1.0135 -5.0559 -0.6720 25 14 1.0835 -4.8360 -3.4328 26 1 1.4394 -3.7375 -4.3667 27 1 1.9827 -5.9944 -3.6664 28 1 -0.3243 -5.2473 -3.6654 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3632 -0.8902 0.5133 31 1 -0.3632 0.8897 0.5142 32 1 1.6899 5.0344 0.8907 33 1 1.6907 5.0345 -0.8893 34 1 4.0824 5.6872 -0.8891 35 1 4.0824 5.6873 0.8908 36 1 2.3361 7.4483 0.8899 37 1 2.3366 7.4475 -0.8901 38 1 4.1639 8.2974 -2.1078 39 1 6.0302 9.8502 -2.1491 40 1 7.0125 10.6694 -0.0147 41 1 6.0761 9.8913 2.1179 42 1 4.5461 1.2669 -0.0123 43 1 2.5849 -3.0953 0.5135 44 1 0.8917 -2.5465 0.5147 45 1 0.7200 -5.9634 -0.8489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122427857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:46 Heat of formation + Delta-G solvation = -23.444690 kcal Electronic energy + Delta-G solvation = -28333.482688 eV Core-core repulsion = 24125.097654 eV Total energy + Delta-G solvation = -4208.385034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.72728 -40.91038 -39.64301 -37.26917 -36.57008 -35.54689 -33.95512 -32.54529 -32.14329 -31.24975 -30.25000 -27.96561 -26.92555 -26.55386 -24.33492 -23.75332 -23.20836 -22.29435 -21.85546 -20.33684 -18.93751 -18.05745 -17.72151 -17.33720 -16.82983 -16.79088 -16.48187 -16.21442 -15.99177 -15.20012 -14.97313 -14.92305 -14.57473 -14.49009 -14.22261 -13.59409 -13.36350 -13.15514 -12.95508 -12.72296 -12.70432 -12.50654 -12.33781 -12.19545 -12.16719 -11.85784 -11.74700 -11.56947 -11.49110 -11.14735 -10.94403 -10.59914 -10.50123 -10.44350 -10.32770 -10.28350 -9.96191 -9.83929 -8.75463 -8.67276 -8.39646 -8.09934 -6.37788 -4.45831 0.40432 1.47078 1.88622 2.12457 2.68774 2.78464 3.14250 3.22307 3.24294 3.28027 3.39805 3.64217 4.09637 4.15032 4.20827 4.42906 4.53788 4.57815 4.66490 4.78126 4.82430 4.96724 4.98305 5.03005 5.12060 5.15760 5.26785 5.43653 5.53404 5.57591 5.62057 5.65441 5.74333 5.85415 5.94228 6.01703 6.08745 6.32945 6.35765 6.66239 6.67902 6.75109 6.85594 7.10694 7.49918 7.66247 7.68809 7.72306 8.13819 8.32175 8.59675 9.21338 10.70521 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024134 B = 0.001678 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.905107 B =16685.859783 C =16906.345158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.173 3.827 3 C -0.320 4.320 4 C 0.553 3.447 5 O -0.530 6.530 6 O -0.355 6.355 7 C 0.075 3.925 8 C -0.134 4.134 9 C 0.093 3.907 10 N -0.494 5.494 11 C 0.135 3.865 12 C -0.235 4.235 13 C -0.017 4.017 14 C -0.244 4.244 15 C 0.511 3.489 16 O -0.548 6.548 17 C 0.081 3.919 18 N -0.297 5.297 19 N -0.310 5.310 20 C 0.250 3.750 21 C -0.541 4.541 22 H 0.066 0.934 23 C 0.068 3.932 24 N -0.888 5.888 25 Si 0.909 3.091 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.279 1.279 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.163 0.837 39 H 0.145 0.855 40 H 0.134 0.866 41 H 0.148 0.852 42 H 0.185 0.815 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.939 28.222 -2.075 28.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.035 3.965 3 C -0.333 4.333 4 C 0.400 3.600 5 O -0.420 6.420 6 O -0.272 6.272 7 C 0.000 4.000 8 C -0.173 4.173 9 C -0.029 4.029 10 N -0.205 5.205 11 C 0.008 3.992 12 C -0.258 4.258 13 C -0.039 4.039 14 C -0.266 4.266 15 C 0.313 3.687 16 O -0.430 6.430 17 C -0.107 4.107 18 N -0.116 5.116 19 N -0.086 5.086 20 C 0.133 3.867 21 C -0.579 4.579 22 H 0.085 0.915 23 C -0.137 4.137 24 N -0.526 5.526 25 Si 0.735 3.265 26 H -0.195 1.195 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.180 0.820 39 H 0.163 0.837 40 H 0.152 0.848 41 H 0.165 0.835 42 H 0.202 0.798 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.881 26.583 -1.316 27.258 hybrid contribution -0.455 0.397 -1.082 1.239 sum 5.426 26.980 -2.398 27.624 Atomic orbital electron populations 1.20624 0.86531 1.04054 1.04176 1.21457 0.94985 0.86440 0.93665 1.18817 0.93804 0.89229 1.31458 1.20034 0.83321 0.84888 0.71746 1.90760 1.17937 1.84519 1.48815 1.86520 1.40026 1.15446 1.85229 1.22687 0.95760 0.78679 1.02896 1.21833 0.98684 0.91793 1.04948 1.21860 0.87661 0.87658 1.05700 1.45539 1.29846 1.38155 1.06957 1.22023 0.93943 0.93661 0.89580 1.20682 1.00816 1.04671 0.99662 1.21468 0.96241 0.94217 0.91956 1.22160 1.00389 1.03868 1.00202 1.17216 0.85367 0.83336 0.82790 1.90992 1.62517 1.60014 1.29519 1.23920 0.96628 0.92131 0.97985 1.77219 0.98250 1.12333 1.23790 1.49429 1.02619 1.08310 1.48240 1.19921 0.96558 0.70638 0.99620 1.21275 1.47528 0.98219 0.90917 0.91545 1.24928 0.94398 0.95964 0.98365 1.69920 1.44417 1.07162 1.31082 0.86256 0.77979 0.78871 0.83346 1.19520 1.20528 1.20526 0.89502 0.90434 0.88865 0.90903 0.91068 0.90120 0.89674 0.87588 0.88493 0.81969 0.83714 0.84808 0.83474 0.79844 0.92270 0.92406 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.66 9.57 36.01 0.34 -1.32 16 2 C 0.17 3.47 7.01 -81.59 -0.57 2.90 16 3 C -0.32 -5.99 6.13 -105.08 -0.64 -6.63 16 4 C 0.55 9.41 7.95 34.41 0.27 9.69 16 5 O -0.53 -9.59 14.63 -19.29 -0.28 -9.87 16 6 O -0.36 -5.06 10.07 -40.64 -0.41 -5.47 16 7 C 0.07 0.79 5.48 37.15 0.20 0.99 16 8 C -0.13 -1.11 5.92 -26.74 -0.16 -1.27 16 9 C 0.09 0.62 5.34 -4.04 -0.02 0.60 16 10 N -0.49 -3.70 2.58 -119.77 -0.31 -4.01 16 11 C 0.14 0.61 10.28 -16.84 -0.17 0.43 16 12 C -0.24 -0.96 10.01 -39.88 -0.40 -1.36 16 13 C -0.02 -0.09 10.10 -39.51 -0.40 -0.49 16 14 C -0.24 -1.95 9.99 -39.37 -0.39 -2.35 16 15 C 0.51 5.40 7.41 -15.45 -0.11 5.28 16 16 O -0.55 -8.02 16.63 4.86 0.08 -7.94 16 17 C 0.08 1.48 11.87 -16.97 -0.20 1.28 16 18 N -0.30 -6.45 12.50 30.87 0.39 -6.06 16 19 N -0.31 -6.96 3.56 -57.76 -0.21 -7.17 16 20 C 0.25 6.12 5.96 -5.20 -0.03 6.09 16 21 C -0.54 -14.37 9.39 -34.44 -0.32 -14.69 16 22 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 23 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 24 N -0.89 -24.26 13.29 55.43 0.74 -23.52 16 25 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 29 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.08 1.31 7.05 -51.93 -0.37 0.94 16 31 H 0.09 1.52 6.50 -51.93 -0.34 1.19 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.11 0.86 7.38 -51.93 -0.38 0.48 16 37 H 0.10 0.35 8.01 -51.93 -0.42 -0.06 16 38 H 0.16 0.20 8.04 -52.49 -0.42 -0.23 16 39 H 0.15 0.23 8.06 -52.49 -0.42 -0.19 16 40 H 0.13 0.34 8.06 -52.49 -0.42 -0.09 16 41 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 42 H 0.18 2.65 8.06 -52.49 -0.42 2.22 16 43 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.06 1.40 7.01 -51.93 -0.36 1.03 16 45 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 393.16 15.07 5.92 5.92 Total: -1.00 -33.96 393.16 -7.87 -41.82 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.06 Total: -0.06 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -2.71 Total: 0.84 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.61 Total: -40.76 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.61 Total: -23.28 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.96 -7.87 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122427857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.377 kcal (2) G-P(sol) polarization free energy of solvation -33.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds