Wall clock time and date at job start Wed Apr 1 2020 03:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38125 * 126.29134 * 2 1 4 4 C 1.47281 * 126.42987 * 0.02653 * 3 2 1 5 5 O 1.21527 * 120.00324 * 359.97438 * 4 3 2 6 6 O 1.34756 * 119.99862 * 179.97438 * 4 3 2 7 7 C 1.45206 * 117.00055 * 179.97438 * 6 4 3 8 8 C 1.52992 * 109.47531 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47482 * 179.97438 * 8 7 6 10 10 N 1.46505 * 109.47212 * 179.97438 * 9 8 7 11 11 C 1.35764 * 119.61995 * 90.00106 * 10 9 8 12 12 C 1.35349 * 120.69993 * 179.97438 * 11 10 9 13 13 C 1.40198 * 119.94836 * 0.02562 * 12 11 10 14 14 C 1.36408 * 119.26538 * 0.02562 * 13 12 11 15 15 C 1.34656 * 119.62335 * 269.73025 * 10 9 8 16 16 O 1.22061 * 119.98888 * 359.97438 * 15 10 9 17 17 C 1.41347 * 107.14146 * 180.27886 * 3 2 1 18 18 N 1.30429 * 108.01131 * 359.56318 * 17 3 2 19 19 N 1.34218 * 126.29570 * 180.02562 * 2 1 3 20 20 C 1.46499 * 125.74437 * 359.94335 * 19 2 1 21 21 C 1.50692 * 109.47099 * 90.00085 * 20 19 2 22 22 H 1.08001 * 120.00310 * 0.02562 * 21 20 19 23 23 C 1.37881 * 119.99996 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99898 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00146 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47073 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47462 * 119.99962 * 25 23 21 28 28 H 1.48501 * 109.47113 * 240.00483 * 25 23 21 29 29 H 1.09001 * 109.46951 * 89.97183 * 1 2 3 30 30 H 1.08993 * 109.46723 * 209.97027 * 1 2 3 31 31 H 1.08994 * 109.46771 * 329.97280 * 1 2 3 32 32 H 1.09002 * 109.47266 * 59.99691 * 7 6 4 33 33 H 1.09001 * 109.46670 * 299.99912 * 7 6 4 34 34 H 1.09002 * 109.47103 * 59.99585 * 8 7 6 35 35 H 1.08998 * 109.46862 * 300.00397 * 8 7 6 36 36 H 1.09002 * 109.47153 * 59.99783 * 9 8 7 37 37 H 1.09001 * 109.46832 * 299.99974 * 9 8 7 38 38 H 1.07993 * 119.65277 * 359.97438 * 11 10 9 39 39 H 1.07993 * 120.02897 * 179.97438 * 12 11 10 40 40 H 1.07997 * 120.37238 * 179.97438 * 13 12 11 41 41 H 1.07998 * 120.34721 * 180.02562 * 14 13 12 42 42 H 1.08001 * 125.99179 * 179.73461 * 17 3 2 43 43 H 1.09005 * 109.46761 * 210.00262 * 20 19 2 44 44 H 1.08997 * 109.47143 * 329.99966 * 20 19 2 45 45 H 0.97001 * 119.99666 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5197 0.0005 5 8 0.7018 2.7873 0.0006 6 8 2.8015 3.5096 0.0010 7 6 2.2982 4.8717 0.0009 8 6 3.4745 5.8500 0.0009 9 6 2.9442 7.2852 0.0002 10 7 4.0706 8.2220 0.0007 11 6 4.5873 8.6508 -1.1793 12 6 5.6274 9.5165 -1.2043 13 6 6.1823 9.9789 -0.0027 14 6 5.6624 9.5461 1.1819 15 6 4.5781 8.6521 1.1715 16 8 4.0992 8.2617 2.2241 17 6 3.6599 0.6496 -0.0066 18 7 3.6340 -0.6544 -0.0008 19 7 2.3016 -1.0818 -0.0005 20 6 1.8499 -2.4754 0.0001 21 6 1.6939 -2.9534 -1.4205 22 1 1.9100 -2.2861 -2.2417 23 6 1.2762 -4.2431 -1.6719 24 7 1.0135 -5.0559 -0.6720 25 14 1.0835 -4.8360 -3.4328 26 1 1.4394 -3.7375 -4.3667 27 1 1.9827 -5.9944 -3.6664 28 1 -0.3243 -5.2473 -3.6654 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3632 -0.8902 0.5133 31 1 -0.3632 0.8897 0.5142 32 1 1.6899 5.0344 0.8907 33 1 1.6907 5.0345 -0.8893 34 1 4.0824 5.6872 -0.8891 35 1 4.0824 5.6873 0.8908 36 1 2.3361 7.4483 0.8899 37 1 2.3366 7.4475 -0.8901 38 1 4.1639 8.2974 -2.1078 39 1 6.0302 9.8502 -2.1491 40 1 7.0125 10.6694 -0.0147 41 1 6.0761 9.8913 2.1179 42 1 4.5461 1.2669 -0.0123 43 1 2.5849 -3.0953 0.5135 44 1 0.8917 -2.5465 0.5147 45 1 0.7200 -5.9634 -0.8489 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122427857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:45 Heat of formation + Delta-G solvation = -43.199460 kcal Electronic energy + Delta-G solvation = -28334.339319 eV Core-core repulsion = 24125.097654 eV Total energy + Delta-G solvation = -4209.241665 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.44478 -42.29287 -40.93010 -37.98336 -37.64764 -36.25183 -35.83960 -33.93755 -33.23693 -32.79339 -30.75198 -29.53560 -28.45370 -27.49705 -25.52401 -24.78849 -24.18767 -23.44609 -22.55649 -21.78700 -20.48851 -18.96690 -18.77872 -18.42772 -18.27611 -17.59816 -17.52566 -17.16963 -16.87990 -16.60230 -16.34527 -16.08170 -15.54408 -15.49520 -15.10774 -15.02706 -14.44672 -14.38631 -14.14367 -13.97755 -13.75778 -13.72785 -13.60669 -13.22689 -13.15587 -13.00099 -12.80917 -12.78872 -12.71774 -12.54471 -12.34047 -12.22601 -11.85800 -11.84563 -11.48236 -11.33839 -11.04686 -10.99069 -10.76987 -10.34547 -9.67821 -8.94302 -8.38988 -6.55235 -0.04649 0.41606 0.95568 1.17251 1.34094 1.36910 1.39521 1.51151 1.65066 1.97494 2.22351 2.32410 2.72234 2.93854 3.61240 3.64186 3.66074 3.78185 3.89464 3.91544 3.97339 4.04866 4.15130 4.18118 4.26819 4.35540 4.41268 4.47253 4.53831 4.55794 4.61093 4.75888 4.85290 4.89768 4.92461 5.03488 5.10580 5.13690 5.23755 5.42421 5.44447 5.48302 5.59033 5.70217 5.72660 5.95461 6.12568 6.53143 6.70844 6.87968 7.01267 7.16057 8.69372 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024134 B = 0.001678 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.905107 B =16685.859783 C =16906.345158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.161 3.839 3 C -0.324 4.324 4 C 0.560 3.440 5 O -0.541 6.541 6 O -0.354 6.354 7 C 0.070 3.930 8 C -0.121 4.121 9 C 0.094 3.906 10 N -0.493 5.493 11 C 0.133 3.867 12 C -0.233 4.233 13 C 0.006 3.994 14 C -0.287 4.287 15 C 0.491 3.509 16 O -0.613 6.613 17 C 0.097 3.903 18 N -0.335 5.335 19 N -0.333 5.333 20 C 0.265 3.735 21 C -0.556 4.556 22 H 0.054 0.946 23 C 0.024 3.976 24 N -0.916 5.916 25 Si 0.973 3.027 26 H -0.271 1.271 27 H -0.275 1.275 28 H -0.268 1.268 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.139 0.861 38 H 0.206 0.794 39 H 0.181 0.819 40 H 0.164 0.836 41 H 0.139 0.861 42 H 0.222 0.778 43 H 0.033 0.967 44 H 0.056 0.944 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.395 30.287 -5.343 31.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.024 3.976 3 C -0.337 4.337 4 C 0.407 3.593 5 O -0.433 6.433 6 O -0.270 6.270 7 C -0.004 4.004 8 C -0.159 4.159 9 C -0.028 4.028 10 N -0.202 5.202 11 C 0.007 3.993 12 C -0.255 4.255 13 C -0.016 4.016 14 C -0.308 4.308 15 C 0.297 3.703 16 O -0.501 6.501 17 C -0.090 4.090 18 N -0.154 5.154 19 N -0.109 5.109 20 C 0.146 3.854 21 C -0.594 4.594 22 H 0.072 0.928 23 C -0.177 4.177 24 N -0.554 5.554 25 Si 0.797 3.203 26 H -0.196 1.196 27 H -0.200 1.200 28 H -0.193 1.193 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.157 0.843 38 H 0.222 0.778 39 H 0.198 0.802 40 H 0.181 0.819 41 H 0.157 0.843 42 H 0.239 0.761 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.354 28.688 -4.616 29.743 hybrid contribution -0.509 -0.053 -0.132 0.528 sum 5.845 28.635 -4.748 29.609 Atomic orbital electron populations 1.20660 0.85035 1.04550 1.04583 1.21975 0.96141 0.86300 0.93176 1.19066 0.93817 0.90114 1.30680 1.19702 0.83315 0.84793 0.71490 1.90752 1.18480 1.84756 1.49324 1.86489 1.39402 1.16606 1.84548 1.22997 0.96910 0.76893 1.03625 1.21721 0.97648 0.92144 1.04417 1.21916 0.87596 0.86513 1.06749 1.45541 1.29706 1.37685 1.07244 1.22819 0.93782 0.93101 0.89593 1.21204 1.00140 1.03659 1.00495 1.21880 0.95732 0.92780 0.91212 1.22116 1.01419 1.05805 1.01488 1.17647 0.85935 0.83792 0.82960 1.90938 1.64743 1.62741 1.31721 1.24531 0.97818 0.91265 0.95422 1.77170 0.98254 1.14158 1.25866 1.49185 1.03366 1.07929 1.50436 1.19476 0.95573 0.71888 0.98435 1.21410 1.47981 0.98557 0.91432 0.92809 1.25731 0.93795 0.95911 1.02298 1.70000 1.44785 1.07608 1.33003 0.85277 0.78426 0.78178 0.78436 1.19590 1.20020 1.19317 0.89017 0.90441 0.87754 0.91543 0.89026 0.88264 0.92504 0.89740 0.84272 0.77763 0.80169 0.81893 0.84276 0.76118 0.94849 0.92639 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.12 9.57 71.24 0.68 -2.44 16 2 C 0.16 6.48 7.01 42.17 0.30 6.77 16 3 C -0.32 -11.84 6.13 -20.16 -0.12 -11.97 16 4 C 0.56 18.22 7.95 70.20 0.56 18.78 16 5 O -0.54 -18.79 14.63 19.75 0.29 -18.50 16 6 O -0.35 -9.42 10.07 -56.66 -0.57 -9.99 16 7 C 0.07 1.34 5.48 71.98 0.39 1.73 16 8 C -0.12 -1.80 5.92 30.59 0.18 -1.62 16 9 C 0.09 1.10 5.34 86.38 0.46 1.56 16 10 N -0.49 -6.62 2.58 -650.97 -1.68 -8.30 16 11 C 0.13 0.66 10.28 83.42 0.86 1.52 16 12 C -0.23 -0.90 10.01 22.08 0.22 -0.68 16 13 C 0.01 0.04 10.10 22.32 0.23 0.27 16 14 C -0.29 -4.68 9.99 22.40 0.22 -4.46 16 15 C 0.49 10.82 7.41 84.82 0.63 11.45 16 16 O -0.61 -19.69 16.63 -5.51 -0.09 -19.78 16 17 C 0.10 3.44 11.87 85.67 1.02 4.46 16 18 N -0.34 -14.68 12.50 -56.24 -0.70 -15.38 16 19 N -0.33 -15.25 3.56 -336.66 -1.20 -16.45 16 20 C 0.26 13.42 5.96 85.63 0.51 13.94 16 21 C -0.56 -30.04 9.39 25.60 0.24 -29.80 16 22 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 23 C 0.02 1.28 5.46 84.66 0.46 1.74 16 24 N -0.92 -50.48 13.29 21.45 0.28 -50.19 16 25 Si 0.97 41.87 29.54 68.60 2.03 43.90 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 28 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 29 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.08 2.64 7.05 -2.39 -0.02 2.62 16 31 H 0.10 3.34 6.50 -2.39 -0.02 3.32 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.40 7.38 -2.39 -0.02 1.39 16 37 H 0.14 0.45 8.01 -2.39 -0.02 0.43 16 38 H 0.21 -0.76 8.04 -2.91 -0.02 -0.78 16 39 H 0.18 -0.51 8.06 -2.91 -0.02 -0.53 16 40 H 0.16 0.25 8.06 -2.91 -0.02 0.23 16 41 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.22 5.85 8.06 -2.91 -0.02 5.83 16 43 H 0.03 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.06 2.79 7.01 -2.39 -0.02 2.77 16 45 H 0.27 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -77.96 393.16 6.20 -71.76 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.01 Total: 11.68 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 6.83 Total: 11.26 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -3.30 Total: -90.33 kcal Atomic # 8 Polarization: -47.90 SS G_CDS: -0.37 Total: -48.27 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -77.96 6.20 -71.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122427857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.560 kcal (2) G-P(sol) polarization free energy of solvation -77.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds