Wall clock time and date at job start Wed Apr 1 2020 04:05:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.29937 * 125.37830 * 2 1
4 4 C 1.36067 * 108.47892 * 179.97438 * 3 2 1
5 5 C 1.47420 * 126.45133 * 179.97438 * 4 3 2
6 6 O 1.21613 * 120.00056 * 180.02562 * 5 4 3
7 7 N 1.34777 * 119.99797 * 0.02562 * 5 4 3
8 8 C 1.46492 * 120.00014 * 180.27539 * 7 5 4
9 9 C 1.53000 * 109.47543 * 179.72389 * 8 7 5
10 10 N 1.46895 * 109.47387 * 179.97438 * 9 8 7
11 11 C 1.46903 * 111.00023 * 180.02562 * 10 9 8
12 12 C 1.50699 * 109.47519 * 180.02562 * 11 10 9
13 13 C 1.38301 * 119.93062 * 269.72994 * 12 11 10
14 14 C 1.38096 * 120.06577 * 179.71847 * 13 12 11
15 15 C 1.38875 * 119.93133 * 0.57322 * 14 13 12
16 16 O 1.35753 * 120.06805 * 179.67987 * 15 14 13
17 17 C 1.34834 * 116.99875 * 174.48766 * 16 15 14
18 18 H 1.07996 * 120.00397 * 5.05466 * 17 16 15
19 19 C 1.38661 * 119.99589 * 185.05749 * 17 16 15
20 20 N 1.31556 * 120.00105 * 359.97438 * 19 17 16
21 21 Si 1.86806 * 119.99671 * 179.97438 * 19 17 16
22 22 H 1.48500 * 109.47179 * 359.97438 * 21 19 17
23 23 H 1.48499 * 109.46936 * 119.99574 * 21 19 17
24 24 H 1.48498 * 109.46865 * 240.00054 * 21 19 17
25 25 C 1.38881 * 119.86609 * 359.69815 * 15 14 13
26 26 C 1.38104 * 119.92662 * 0.02562 * 25 15 14
27 27 C 1.36100 * 107.10239 * 0.22123 * 4 3 2
28 28 O 1.34051 * 125.37979 * 179.97438 * 2 1 3
29 29 H 1.08995 * 109.47138 * 90.00383 * 1 2 3
30 30 H 1.09000 * 109.47038 * 209.99979 * 1 2 3
31 31 H 1.09000 * 109.47067 * 329.99640 * 1 2 3
32 32 H 0.97001 * 119.99783 * 0.02562 * 7 5 4
33 33 H 1.09007 * 109.47550 * 299.72522 * 8 7 5
34 34 H 1.09001 * 109.47543 * 59.72535 * 8 7 5
35 35 H 1.08998 * 109.47391 * 300.00543 * 9 8 7
36 36 H 1.09008 * 109.46866 * 60.00155 * 9 8 7
37 37 H 1.00897 * 111.00384 * 303.95980 * 10 9 8
38 38 H 1.09005 * 109.47299 * 300.00736 * 11 10 9
39 39 H 1.08998 * 109.47382 * 59.99793 * 11 10 9
40 40 H 1.08001 * 119.96076 * 359.97438 * 13 12 11
41 41 H 1.08003 * 120.03417 * 180.26885 * 14 13 12
42 42 H 0.97000 * 119.99672 * 180.02562 * 20 19 17
43 43 H 1.07995 * 120.03320 * 179.97438 * 25 15 14
44 44 H 1.07991 * 119.96241 * 179.97438 * 26 25 15
45 45 H 1.07998 * 126.52151 * 179.77238 * 27 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2593 1.0594 0.0000
4 6 3.5612 0.6639 0.0006
5 6 4.7440 1.5439 0.0003
6 8 5.8605 1.0619 0.0004
7 7 4.5879 2.8826 -0.0002
8 6 5.7631 3.7571 -0.0066
9 6 5.3113 5.2188 -0.0127
10 7 6.4898 6.0957 -0.0185
11 6 6.0935 7.5102 -0.0238
12 6 7.3261 8.3773 -0.0303
13 6 7.8898 8.7842 1.1652
14 6 9.0227 9.5739 1.1625
15 6 9.5889 9.9694 -0.0423
16 8 10.6987 10.7511 -0.0482
17 6 11.2629 11.0041 -1.2464
18 1 10.7855 10.6594 -2.1517
19 6 12.4563 11.7068 -1.3162
20 7 13.0376 12.1271 -0.2134
21 14 13.2384 12.0566 -2.9762
22 1 12.3930 11.4808 -4.0528
23 1 13.3547 13.5244 -3.1691
24 1 14.5893 11.4420 -3.0262
25 6 9.0171 9.5638 -1.2412
26 6 7.8876 8.7693 -1.2319
27 6 3.5660 -0.6971 -0.0041
28 8 2.2831 -1.0930 0.0005
29 1 -0.3633 -0.0001 -1.0276
30 1 -0.3633 -0.8900 0.5138
31 1 -0.3633 0.8899 0.5139
32 1 3.6973 3.2670 0.0001
33 1 6.3632 3.5660 0.8832
34 1 6.3597 3.5576 -0.8968
35 1 4.7113 5.4100 -0.9023
36 1 4.7148 5.4184 0.8776
37 1 7.0952 5.8930 0.7628
38 1 5.4990 7.7177 -0.9136
39 1 5.5023 7.7253 0.8662
40 1 7.4460 8.4805 2.1018
41 1 9.4650 9.8878 2.0965
42 1 13.8722 12.6190 -0.2624
43 1 9.4550 9.8701 -2.1797
44 1 7.4423 8.4540 -2.1639
45 1 4.4362 -1.3367 -0.0084
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001126161314.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:05:29
Heat of formation + Delta-G solvation = -44.026105 kcal
Electronic energy + Delta-G solvation = -27226.751577 eV
Core-core repulsion = 23017.474066 eV
Total energy + Delta-G solvation = -4209.277511 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-44.48287 -40.80046 -40.67168 -38.74984 -37.33689 -36.04398 -35.38776 -34.26957
-33.18727 -31.86702 -31.69497 -29.36431 -28.63758 -27.44819 -25.75805 -24.57999
-23.60940 -23.11915 -22.49336 -21.93792 -21.57806 -19.82869 -19.31144 -18.81889
-17.98934 -17.56488 -17.28710 -17.09451 -16.50387 -16.41016 -16.12278 -15.77516
-15.67228 -15.49444 -15.14407 -15.05538 -14.87686 -14.62477 -14.43770 -14.34557
-14.23903 -13.88901 -13.58695 -13.36812 -13.26801 -12.98921 -12.66253 -12.54226
-12.38694 -12.31369 -12.22881 -12.11772 -12.00290 -11.95928 -11.47407 -11.15970
-10.79986 -10.33608 -9.98448 -9.75735 -9.38549 -8.89855 -8.47182 -6.15170
0.01787 0.62362 0.68418 0.90774 1.35023 1.43109 1.53319 1.55974
1.94445 2.14469 2.17828 2.78393 2.86103 3.13336 3.51837 3.53870
3.70142 3.76792 3.90423 4.04050 4.09658 4.16634 4.23212 4.40711
4.47681 4.50456 4.53475 4.62274 4.68512 4.72786 4.73620 4.81181
4.85657 4.90971 4.94031 5.11171 5.17309 5.23399 5.24975 5.32345
5.58167 5.73632 5.82856 6.02879 6.04238 6.21715 6.26295 6.42134
6.52822 6.97932 6.99423 7.78995 8.76338
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.025829 B = 0.001341 C = 0.001317
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1083.799518 B =20867.938317 C =21254.006151
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 C 0.202 3.798
3 N -0.487 5.487
4 C -0.101 4.101
5 C 0.599 3.401
6 O -0.571 6.571
7 N -0.700 5.700
8 C 0.124 3.876
9 C 0.059 3.941
10 N -0.694 5.694
11 C 0.125 3.875
12 C -0.160 4.160
13 C -0.059 4.059
14 C -0.206 4.206
15 C 0.113 3.887
16 O -0.234 6.234
17 C -0.413 4.413
18 H 0.101 0.899
19 C -0.023 4.023
20 N -0.921 5.921
21 Si 1.018 2.982
22 H -0.252 1.252
23 H -0.267 1.267
24 H -0.269 1.269
25 C -0.246 4.246
26 C -0.050 4.050
27 C 0.024 3.976
28 O -0.197 6.197
29 H 0.112 0.888
30 H 0.111 0.889
31 H 0.112 0.888
32 H 0.418 0.582
33 H 0.064 0.936
34 H 0.065 0.935
35 H 0.087 0.913
36 H 0.052 0.948
37 H 0.346 0.654
38 H 0.086 0.914
39 H 0.053 0.947
40 H 0.149 0.851
41 H 0.112 0.888
42 H 0.272 0.728
43 H 0.115 0.885
44 H 0.136 0.864
45 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.199 -25.259 -0.044 38.608
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C -0.007 4.007
3 N -0.218 5.218
4 C -0.219 4.219
5 C 0.385 3.615
6 O -0.451 6.451
7 N -0.351 5.351
8 C 0.000 4.000
9 C -0.070 4.070
10 N -0.327 5.327
11 C -0.003 4.003
12 C -0.161 4.161
13 C -0.077 4.077
14 C -0.225 4.225
15 C 0.063 3.937
16 O -0.141 6.141
17 C -0.489 4.489
18 H 0.118 0.882
19 C -0.220 4.220
20 N -0.559 5.559
21 Si 0.837 3.163
22 H -0.175 1.175
23 H -0.192 1.192
24 H -0.194 1.194
25 C -0.265 4.265
26 C -0.068 4.068
27 C -0.051 4.051
28 O -0.084 6.084
29 H 0.131 0.869
30 H 0.129 0.871
31 H 0.131 0.869
32 H 0.255 0.745
33 H 0.082 0.918
34 H 0.083 0.917
35 H 0.106 0.894
36 H 0.070 0.930
37 H 0.164 0.836
38 H 0.104 0.896
39 H 0.071 0.929
40 H 0.166 0.834
41 H 0.130 0.870
42 H 0.081 0.919
43 H 0.133 0.867
44 H 0.154 0.846
45 H 0.268 0.732
Dipole moment (debyes) X Y Z Total
from point charges -28.289 -24.760 -0.480 37.598
hybrid contribution 0.837 0.191 0.376 0.937
sum -27.452 -24.569 -0.104 36.841
Atomic orbital electron populations
1.20636 0.77626 1.06892 1.06507 1.27316 0.98136 0.77558 0.97674
1.70728 1.00435 1.31081 1.19533 1.21665 0.92075 0.93679 1.14510
1.16963 0.86252 0.82363 0.75896 1.90834 1.25731 1.76021 1.52486
1.45590 1.11264 1.04956 1.73314 1.21246 0.87198 0.89072 1.02437
1.21992 0.92637 0.89902 1.02488 1.60347 1.17744 1.03448 1.51138
1.20608 0.92452 0.85176 1.02040 1.19633 1.00552 1.03629 0.92268
1.20914 0.93109 0.94939 0.98736 1.20450 1.00733 1.06208 0.95117
1.19976 0.87801 0.90524 0.95445 1.83938 1.36867 1.59821 1.33487
1.21858 1.06275 1.37213 0.83578 0.88196 1.26576 0.95815 0.95859
1.03737 1.70190 1.18686 1.37142 1.29899 0.84537 0.78127 0.78621
0.74967 1.17544 1.19207 1.19385 1.21263 1.01129 1.06873 0.97215
1.20923 0.93139 0.94018 0.98731 1.25742 0.85595 0.95370 0.98367
1.84446 1.16593 1.38164 1.69157 0.86949 0.87057 0.86920 0.74531
0.91777 0.91692 0.89420 0.92951 0.83598 0.89585 0.92856 0.83377
0.86998 0.91862 0.86675 0.84619 0.73210
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.06 10.51 71.24 0.75 0.69 16
2 C 0.20 2.20 8.30 88.39 0.73 2.93 16
3 N -0.49 -7.71 11.06 -293.03 -3.24 -10.95 16
4 C -0.10 -1.82 6.99 40.41 0.28 -1.53 16
5 C 0.60 13.09 7.81 86.66 0.68 13.77 16
6 O -0.57 -16.12 16.89 -4.07 -0.07 -16.19 16
7 N -0.70 -12.21 5.55 -466.38 -2.59 -14.80 16
8 C 0.12 2.24 5.93 86.38 0.51 2.75 16
9 C 0.06 0.87 5.80 86.30 0.50 1.37 16
10 N -0.69 -13.78 6.49 -517.92 -3.36 -17.14 16
11 C 0.13 2.59 5.81 85.56 0.50 3.09 16
12 C -0.16 -4.77 5.40 -19.83 -0.11 -4.88 16
13 C -0.06 -1.89 9.69 22.25 0.22 -1.67 16
14 C -0.21 -8.75 9.99 22.39 0.22 -8.53 16
15 C 0.11 5.71 6.65 22.58 0.15 5.86 16
16 O -0.23 -14.39 9.76 -22.81 -0.22 -14.61 16
17 C -0.41 -24.53 9.49 67.92 0.64 -23.89 16
18 H 0.10 5.48 5.20 -2.91 -0.02 5.47 16
19 C -0.02 -1.30 5.49 84.84 0.47 -0.83 16
20 N -0.92 -57.27 13.67 21.62 0.30 -56.97 16
21 Si 1.02 43.64 29.55 68.60 2.03 45.67 16
22 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16
23 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16
24 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16
25 C -0.25 -10.89 9.17 22.39 0.21 -10.69 16
26 C -0.05 -1.72 9.69 22.25 0.22 -1.51 16
27 C 0.02 0.32 11.95 67.32 0.80 1.12 16
28 O -0.20 -2.37 10.73 0.35 0.00 -2.37 16
29 H 0.11 -0.20 8.14 -2.39 -0.02 -0.21 16
30 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16
31 H 0.11 -0.05 8.14 -2.39 -0.02 -0.06 16
32 H 0.42 5.74 8.20 -92.71 -0.76 4.98 16
33 H 0.06 1.25 8.14 -2.38 -0.02 1.24 16
34 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16
35 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16
36 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16
37 H 0.35 6.95 8.72 -89.70 -0.78 6.16 16
38 H 0.09 1.63 8.08 -2.38 -0.02 1.61 16
39 H 0.05 0.92 8.08 -2.39 -0.02 0.90 16
40 H 0.15 3.59 8.06 -2.91 -0.02 3.56 16
41 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16
42 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16
43 H 0.12 5.26 5.64 -2.91 -0.02 5.24 16
44 H 0.14 3.94 8.06 -2.92 -0.02 3.92 16
45 H 0.25 2.03 8.06 -2.91 -0.02 2.00 16
Total: -1.00 -81.29 395.17 -0.88 -82.16
By element:
Atomic # 1 Polarization: 27.64 SS G_CDS: -0.49 Total: 27.14 kcal
Atomic # 6 Polarization: -28.71 SS G_CDS: 6.77 Total: -21.94 kcal
Atomic # 7 Polarization: -90.97 SS G_CDS: -8.90 Total: -99.87 kcal
Atomic # 8 Polarization: -32.88 SS G_CDS: -0.29 Total: -33.17 kcal
Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal
Total: -81.29 -0.88 -82.16 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001126161314.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.138 kcal
(2) G-P(sol) polarization free energy of solvation -81.287 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.148 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.164 kcal
(6) G-S(sol) free energy of system = (1) + (5) -44.026 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds