Wall clock time and date at job start Wed Apr 1 2020 03:45:47
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.41270 * 128.07609 * 2 1
4 4 N 1.30129 * 106.58899 * 180.24476 * 3 2 1
5 5 O 1.20884 * 111.98250 * 359.76347 * 4 3 2
6 6 C 1.34643 * 111.47001 * 0.02562 * 5 4 3
7 7 C 1.47512 * 126.94169 * 179.97438 * 6 5 4
8 8 O 1.21589 * 119.99665 * 180.02562 * 7 6 5
9 9 N 1.34776 * 120.00227 * 0.02562 * 7 6 5
10 10 C 1.46500 * 119.99831 * 179.97438 * 9 7 6
11 11 C 1.53002 * 109.46872 * 179.97438 * 10 9 7
12 12 N 1.46907 * 109.46965 * 180.02562 * 11 10 9
13 13 C 1.46901 * 110.99930 * 180.02562 * 12 11 10
14 14 C 1.50695 * 109.46891 * 179.97438 * 13 12 11
15 15 C 1.38299 * 119.93247 * 90.00141 * 14 13 12
16 16 C 1.38101 * 120.07425 * 179.97438 * 15 14 13
17 17 C 1.38886 * 119.92536 * 0.02562 * 16 15 14
18 18 O 1.35750 * 120.06440 * 180.02562 * 17 16 15
19 19 C 1.34828 * 117.00075 * 5.53777 * 18 17 16
20 20 H 1.07993 * 120.00518 * 354.94289 * 19 18 17
21 21 C 1.38663 * 119.99751 * 174.94575 * 19 18 17
22 22 N 1.31556 * 120.00220 * 359.97438 * 21 19 18
23 23 Si 1.86795 * 119.99821 * 180.02562 * 21 19 18
24 24 H 1.48499 * 109.47264 * 359.97438 * 23 21 19
25 25 H 1.48494 * 109.47375 * 119.99795 * 23 21 19
26 26 H 1.48506 * 109.47301 * 239.99793 * 23 21 19
27 27 C 1.38874 * 119.86623 * 0.27854 * 17 16 15
28 28 C 1.38106 * 119.92542 * 359.44577 * 27 17 16
29 29 H 1.08996 * 109.47321 * 270.14037 * 1 2 3
30 30 H 1.09000 * 109.46768 * 30.14573 * 1 2 3
31 31 H 1.08999 * 109.46879 * 150.14390 * 1 2 3
32 32 H 1.07994 * 126.70083 * 0.02562 * 3 2 1
33 33 H 0.96994 * 120.00142 * 359.97438 * 9 7 6
34 34 H 1.09008 * 109.47322 * 59.99850 * 10 9 7
35 35 H 1.09002 * 109.47747 * 300.00201 * 10 9 7
36 36 H 1.09001 * 109.46831 * 60.00839 * 11 10 9
37 37 H 1.08990 * 109.47270 * 300.00061 * 11 10 9
38 38 H 1.00900 * 111.00053 * 56.04608 * 12 11 10
39 39 H 1.08998 * 109.46720 * 60.00340 * 13 12 11
40 40 H 1.08996 * 109.47268 * 299.99941 * 13 12 11
41 41 H 1.07999 * 119.96503 * 0.02562 * 15 14 13
42 42 H 1.07992 * 120.03608 * 180.02562 * 16 15 14
43 43 H 0.96996 * 120.00178 * 179.97438 * 22 21 19
44 44 H 1.07996 * 120.03745 * 179.72497 * 27 17 16
45 45 H 1.07997 * 119.96326 * 180.27708 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3782 1.1121 0.0000
4 7 3.5891 0.6354 -0.0053
5 8 3.5995 -0.5734 -0.0039
6 6 2.3509 -1.0770 0.0022
7 6 1.9697 -2.5020 0.0051
8 8 0.7953 -2.8171 0.0103
9 7 2.9230 -3.4547 0.0020
10 6 2.5444 -4.8699 0.0054
11 6 3.8061 -5.7354 0.0002
12 7 3.4264 -7.1545 0.0030
13 6 4.6152 -8.0175 -0.0013
14 6 4.1869 -9.4623 0.0024
15 6 3.9855 -10.1254 -1.1945
16 6 3.5936 -11.4497 -1.1945
17 6 3.4012 -12.1153 0.0091
18 8 3.0164 -13.4172 0.0124
19 6 2.9493 -14.0386 -1.1823
20 1 3.1164 -13.4804 -2.0915
21 6 2.6657 -15.3945 -1.2434
22 7 2.4625 -16.0747 -0.1358
23 14 2.5734 -16.2557 -2.8985
24 1 2.8391 -15.2755 -3.9819
25 1 3.5880 -17.3386 -2.9503
26 1 1.2190 -16.8374 -3.0790
27 6 3.5981 -11.4450 1.2093
28 6 3.9956 -10.1224 1.2026
29 1 -0.3634 0.0025 1.0276
30 1 -0.3633 0.8887 -0.5161
31 1 -0.3633 -0.8913 -0.5116
32 1 2.0947 2.1541 0.0004
33 1 3.8598 -3.2033 -0.0025
34 1 1.9500 -5.0892 -0.8817
35 1 1.9580 -5.0871 0.8982
36 1 4.4006 -5.5162 0.8871
37 1 4.3919 -5.5182 -0.8928
38 1 2.8210 -7.3684 -0.7754
39 1 5.2147 -7.8144 0.8860
40 1 5.2073 -7.8160 -0.8939
41 1 4.1356 -9.6074 -2.1301
42 1 3.4368 -11.9670 -2.1294
43 1 2.2638 -17.0231 -0.1786
44 1 3.4450 -11.9587 2.1469
45 1 4.1533 -9.6018 2.1356
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001146494109.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:45:47
Heat of formation + Delta-G solvation = 25.153711 kcal
Electronic energy + Delta-G solvation = -27450.682228 eV
Core-core repulsion = 23244.404579 eV
Total energy + Delta-G solvation = -4206.277649 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-45.53668 -40.12825 -39.10324 -37.39107 -36.32289 -35.32731 -34.53795 -32.89206
-32.32185 -30.67375 -30.16649 -29.03222 -27.82001 -25.58661 -24.67434 -23.79955
-22.87480 -22.24022 -21.95706 -21.08016 -20.42413 -19.11942 -18.29985 -17.99989
-17.09028 -16.62153 -16.38038 -16.22458 -15.45600 -15.14783 -14.93071 -14.58105
-14.53573 -14.39394 -13.86801 -13.79223 -13.71457 -13.70712 -13.56471 -13.48979
-13.15617 -12.73154 -12.60864 -12.38893 -11.85778 -11.80318 -11.77183 -11.52591
-11.28113 -10.91662 -10.86465 -10.77265 -10.63502 -10.59042 -10.42895 -10.03622
-9.57808 -9.34825 -8.86198 -8.53562 -8.18489 -7.20805 -6.46700 -4.05527
0.27874 1.54332 2.05328 2.21430 2.25959 2.49690 2.70792 3.11072
3.12602 3.18137 3.63319 3.95195 4.02204 4.16489 4.24645 4.48827
4.56439 4.64967 4.77856 4.82906 5.08502 5.13811 5.14082 5.18768
5.25714 5.29864 5.34231 5.36555 5.54491 5.60348 5.68925 5.72174
5.76369 5.83491 5.88278 6.20231 6.41193 6.68767 6.77378 6.85353
6.92379 7.03625 7.23354 7.26882 7.38944 7.43225 7.44056 7.57391
7.81547 7.98379 8.99009 9.69163 10.71325
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.026411 B = 0.001367 C = 0.001345
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1059.890227 B =20481.323507 C =20816.625956
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.088 4.088
2 C -0.116 4.116
3 C -0.015 4.015
4 N -0.341 5.341
5 O 0.116 5.884
6 C -0.096 4.096
7 C 0.607 3.393
8 O -0.506 6.506
9 N -0.713 5.713
10 C 0.119 3.881
11 C 0.046 3.954
12 N -0.681 5.681
13 C 0.121 3.879
14 C -0.189 4.189
15 C -0.064 4.064
16 C -0.235 4.235
17 C 0.157 3.843
18 O -0.178 6.178
19 C -0.392 4.392
20 H 0.093 0.907
21 C 0.039 3.961
22 N -0.861 5.861
23 Si 0.941 3.059
24 H -0.267 1.267
25 H -0.276 1.276
26 H -0.276 1.276
27 C -0.195 4.195
28 C -0.051 4.051
29 H 0.082 0.918
30 H 0.075 0.925
31 H 0.091 0.909
32 H 0.199 0.801
33 H 0.407 0.593
34 H 0.074 0.926
35 H 0.086 0.914
36 H 0.079 0.921
37 H 0.035 0.965
38 H 0.345 0.655
39 H 0.072 0.928
40 H 0.030 0.970
41 H 0.103 0.897
42 H 0.126 0.874
43 H 0.270 0.730
44 H 0.117 0.883
45 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.221 30.845 -0.936 30.883
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.121 4.121
3 C -0.193 4.193
4 N -0.040 5.040
5 O 0.042 5.958
6 C -0.161 4.161
7 C 0.390 3.610
8 O -0.381 6.381
9 N -0.365 5.365
10 C -0.005 4.005
11 C -0.084 4.084
12 N -0.313 5.313
13 C -0.007 4.007
14 C -0.190 4.190
15 C -0.083 4.083
16 C -0.254 4.254
17 C 0.103 3.897
18 O -0.081 6.081
19 C -0.468 4.468
20 H 0.110 0.890
21 C -0.165 4.165
22 N -0.496 5.496
23 Si 0.766 3.234
24 H -0.191 1.191
25 H -0.201 1.201
26 H -0.201 1.201
27 C -0.214 4.214
28 C -0.069 4.069
29 H 0.101 0.899
30 H 0.094 0.906
31 H 0.110 0.890
32 H 0.216 0.784
33 H 0.242 0.758
34 H 0.092 0.908
35 H 0.104 0.896
36 H 0.097 0.903
37 H 0.053 0.947
38 H 0.164 0.836
39 H 0.090 0.910
40 H 0.048 0.952
41 H 0.121 0.879
42 H 0.144 0.856
43 H 0.080 0.920
44 H 0.135 0.865
45 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 1.385 30.719 -0.012 30.750
hybrid contribution 0.011 -0.187 -1.804 1.814
sum 1.397 30.532 -1.817 30.617
Atomic orbital electron populations
1.20364 0.86158 1.04334 1.03659 1.21693 0.99166 0.90251 1.01013
1.25048 0.87660 1.02235 1.04311 1.73773 1.23128 0.91150 1.15955
1.84955 1.28132 1.15580 1.67120 1.24011 0.84764 0.96200 1.11160
1.16424 0.85682 0.81420 0.77486 1.90886 1.17105 1.80489 1.49606
1.45784 1.09812 1.06702 1.74197 1.21434 0.97614 0.77503 1.03900
1.22083 0.95666 0.89300 1.01306 1.60455 1.18687 1.01229 1.50976
1.20607 0.90342 0.89662 1.00081 1.19071 1.11988 0.94532 0.93420
1.20583 0.97474 0.94001 0.96276 1.21120 1.10397 0.95520 0.98399
1.19418 0.91193 0.85813 0.93302 1.83979 1.73079 1.17999 1.33025
1.21377 1.50205 0.92125 0.83116 0.89010 1.25295 0.96539 0.95417
0.99260 1.70046 1.43936 1.08783 1.26866 0.85646 0.78305 0.79347
0.80116 1.19124 1.20136 1.20128 1.20231 1.09828 0.95098 0.96237
1.20467 0.96765 0.93041 0.96675 0.89943 0.90608 0.89041 0.78366
0.75786 0.90805 0.89611 0.90257 0.94690 0.83608 0.90953 0.95225
0.87927 0.85628 0.92046 0.86530 0.87007
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.50 9.95 36.01 0.36 -0.14 16
2 C -0.12 -0.84 6.37 -103.98 -0.66 -1.50 16
3 C -0.01 -0.10 12.14 -17.12 -0.21 -0.30 16
4 N -0.34 -2.91 12.04 30.46 0.37 -2.54 16
5 O 0.12 0.94 11.04 15.55 0.17 1.11 16
6 C -0.10 -0.78 7.29 -36.32 -0.26 -1.05 16
7 C 0.61 5.47 7.82 -12.48 -0.10 5.37 16
8 O -0.51 -5.98 15.12 5.29 0.08 -5.90 16
9 N -0.71 -4.98 5.55 -61.35 -0.34 -5.32 16
10 C 0.12 0.94 5.93 -4.04 -0.02 0.91 16
11 C 0.05 0.36 5.80 -3.82 -0.02 0.33 16
12 N -0.68 -7.30 6.49 -115.06 -0.75 -8.05 16
13 C 0.12 1.45 5.81 -4.98 -0.03 1.42 16
14 C -0.19 -3.03 5.40 -104.58 -0.56 -3.59 16
15 C -0.06 -1.12 9.69 -39.61 -0.38 -1.51 16
16 C -0.24 -4.98 9.17 -39.39 -0.36 -5.34 16
17 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16
18 O -0.18 -5.05 9.76 0.05 0.00 -5.05 16
19 C -0.39 -10.87 9.49 30.89 0.29 -10.58 16
20 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16
21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16
22 N -0.86 -25.13 13.67 55.48 0.76 -24.37 16
23 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16
24 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16
25 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16
26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16
27 C -0.19 -4.06 9.99 -39.39 -0.39 -4.45 16
28 C -0.05 -0.88 9.69 -39.61 -0.38 -1.27 16
29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16
31 H 0.09 0.67 6.73 -51.93 -0.35 0.32 16
32 H 0.20 0.60 8.06 -52.49 -0.42 0.18 16
33 H 0.41 1.94 8.30 -40.82 -0.34 1.60 16
34 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16
35 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16
36 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16
37 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16
38 H 0.35 3.73 8.72 -39.29 -0.34 3.39 16
39 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16
40 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16
41 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16
42 H 0.13 2.68 5.64 -52.49 -0.30 2.39 16
43 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16
44 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16
45 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16
LS Contribution 391.39 15.07 5.90 5.90
Total: -1.00 -32.64 391.39 -7.74 -40.37
By element:
Atomic # 1 Polarization: 11.55 SS G_CDS: -5.80 Total: 5.74 kcal
Atomic # 6 Polarization: -14.13 SS G_CDS: -3.10 Total: -17.23 kcal
Atomic # 7 Polarization: -40.32 SS G_CDS: 0.04 Total: -40.28 kcal
Atomic # 8 Polarization: -10.08 SS G_CDS: 0.25 Total: -9.83 kcal
Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -32.64 -7.74 -40.37 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001146494109.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.526 kcal
(2) G-P(sol) polarization free energy of solvation -32.636 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.890 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.737 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.154 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds