Wall clock time and date at job start Wed Apr 1 2020 02:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31486 * 119.81287 * 2 1 4 4 C 1.32744 * 121.73020 * 180.02562 * 3 2 1 5 5 N 1.38370 * 119.42680 * 180.02562 * 4 3 2 6 6 C 1.46511 * 119.99722 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.46995 * 180.02562 * 6 5 4 8 8 O 1.42904 * 109.47068 * 65.00379 * 7 6 5 9 9 C 1.42900 * 113.99805 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.46832 * 179.97438 * 9 8 7 11 11 N 1.46495 * 109.47240 * 64.99960 * 10 9 8 12 12 C 1.34514 * 125.20793 * 269.69607 * 11 10 9 13 13 O 1.21407 * 125.79419 * 359.97438 * 12 11 10 14 14 C 1.47962 * 108.41521 * 179.85424 * 12 11 10 15 15 C 1.34319 * 106.79152 * 0.40228 * 14 12 11 16 16 C 1.34517 * 125.20660 * 89.99919 * 11 10 9 17 17 O 1.21408 * 125.79404 * 359.97438 * 16 11 10 18 18 C 1.39701 * 121.13959 * 359.97438 * 4 3 2 19 19 C 1.36560 * 119.49336 * 0.02562 * 18 4 3 20 20 C 1.40752 * 119.81851 * 180.02562 * 2 1 3 21 21 C 1.41201 * 120.57043 * 359.72233 * 20 2 1 22 22 H 1.07995 * 119.99577 * 334.88302 * 21 20 2 23 23 C 1.39873 * 120.00087 * 154.88288 * 21 20 2 24 24 N 1.30906 * 119.99751 * 344.02397 * 23 21 20 25 25 Si 1.86796 * 119.99856 * 164.01954 * 23 21 20 26 26 H 1.48497 * 109.47484 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46656 * 120.00164 * 25 23 21 28 28 H 1.48497 * 109.47169 * 240.00021 * 25 23 21 29 29 H 1.09000 * 109.46755 * 269.97986 * 1 2 3 30 30 H 1.08999 * 109.47295 * 29.97636 * 1 2 3 31 31 H 1.08996 * 109.46828 * 149.97895 * 1 2 3 32 32 H 0.96996 * 120.00912 * 0.02562 * 5 4 3 33 33 H 1.09000 * 109.46823 * 300.00106 * 6 5 4 34 34 H 1.08995 * 109.46725 * 60.00189 * 6 5 4 35 35 H 1.09003 * 109.46876 * 184.99685 * 7 6 5 36 36 H 1.08998 * 109.47279 * 304.99646 * 7 6 5 37 37 H 1.08999 * 109.46997 * 299.99785 * 9 8 7 38 38 H 1.09007 * 109.47441 * 59.99886 * 9 8 7 39 39 H 1.09005 * 109.47115 * 185.00186 * 10 9 8 40 40 H 1.09002 * 109.47381 * 304.99423 * 10 9 8 41 41 H 1.07994 * 126.60538 * 180.13510 * 14 12 11 42 42 H 1.08002 * 126.60445 * 179.79584 * 15 14 12 43 43 H 1.08006 * 120.25505 * 179.97438 * 18 4 3 44 44 H 1.08008 * 120.79520 * 180.02562 * 19 18 4 45 45 H 0.96996 * 119.99679 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1853 -0.0005 5 7 4.1265 2.4125 0.0001 6 6 5.5903 2.4761 0.0001 7 6 6.0371 3.9394 0.0014 8 8 5.6318 4.5601 1.2231 9 6 6.0028 5.9362 1.3268 10 6 5.5200 6.4949 2.6669 11 7 6.2247 5.8201 3.7597 12 6 5.8069 4.7005 4.3774 13 8 4.7906 4.0867 4.1238 14 6 6.7976 4.3425 5.4164 15 6 7.7605 5.2780 5.3732 16 6 7.3856 6.2283 4.3028 17 8 8.0186 7.2097 3.9708 18 6 4.2494 0.0144 -0.0005 19 6 3.6199 -1.1975 -0.0006 20 6 2.2069 -1.2212 -0.0005 21 6 1.5092 -2.4488 0.0048 22 1 0.5079 -2.4989 0.4061 23 6 2.1150 -3.5998 -0.5097 24 7 3.1766 -3.4971 -1.2688 25 14 1.4094 -5.2833 -0.1134 26 1 0.2165 -5.1277 0.7572 27 1 1.0167 -5.9643 -1.3732 28 1 2.4336 -6.0962 0.5903 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8898 -0.5141 32 1 3.6056 3.2307 0.0012 33 1 5.9755 1.9781 0.8898 34 1 5.9755 1.9790 -0.8901 35 1 7.1224 3.9879 -0.0881 36 1 5.5796 4.4598 -0.8399 37 1 7.0873 6.0257 1.2649 38 1 5.5448 6.4984 0.5130 39 1 5.7238 7.5649 2.7091 40 1 4.4479 6.3252 2.7663 41 1 6.7528 3.4950 6.0841 42 1 8.6394 5.3269 5.9989 43 1 5.3282 0.0672 -0.0014 44 1 4.1884 -2.1159 -0.0002 45 1 3.5969 -4.2953 -1.6252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161029794.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:04 Heat of formation + Delta-G solvation = -53.402518 kcal Electronic energy + Delta-G solvation = -29225.984308 eV Core-core repulsion = 25016.300205 eV Total energy + Delta-G solvation = -4209.684103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.17630 -40.51512 -39.69074 -39.23296 -37.24532 -36.90067 -35.47388 -34.77062 -32.95994 -32.35921 -30.65963 -29.22550 -28.60856 -26.29384 -25.98862 -24.54632 -23.84825 -23.07915 -22.51660 -21.53632 -20.94378 -19.10243 -18.65981 -18.21665 -17.90986 -17.66823 -17.24351 -17.03120 -16.76379 -16.56798 -16.02837 -15.43483 -15.37583 -15.35439 -15.08325 -15.00251 -14.87824 -14.76843 -14.49286 -14.25208 -13.67869 -13.60374 -13.44279 -13.23628 -13.03121 -12.97664 -12.84127 -12.75057 -12.59512 -12.19674 -12.10361 -11.93146 -11.51591 -11.29833 -11.17634 -11.16191 -10.79998 -10.67386 -10.35955 -9.99481 -9.88381 -8.62223 -8.34467 -6.07254 -0.87519 0.89717 1.14435 1.36510 1.42526 1.56225 1.58132 1.64117 1.78575 2.26707 2.54103 2.69587 2.85469 2.94236 3.22016 3.77521 3.80715 3.93223 4.04596 4.16683 4.18648 4.23937 4.27207 4.38603 4.38968 4.51018 4.60476 4.60875 4.67720 4.70440 4.75266 4.78256 4.86856 4.89090 5.00555 5.07165 5.22459 5.39385 5.56268 5.62051 5.67272 5.90351 6.03104 6.14627 6.17786 6.52564 6.60072 6.66618 6.88057 6.97756 7.16745 7.90314 8.44592 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017410 B = 0.002175 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.909724 B =12868.434882 C =13251.384730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.021 3.979 3 N -0.541 5.541 4 C 0.291 3.709 5 N -0.730 5.730 6 C 0.143 3.857 7 C 0.062 3.938 8 O -0.400 6.400 9 C 0.042 3.958 10 C 0.112 3.888 11 N -0.591 5.591 12 C 0.527 3.473 13 O -0.483 6.483 14 C -0.133 4.133 15 C -0.123 4.123 16 C 0.538 3.462 17 O -0.491 6.491 18 C -0.218 4.218 19 C -0.107 4.107 20 C -0.004 4.004 21 C -0.480 4.480 22 H 0.082 0.918 23 C 0.031 3.969 24 N -0.841 5.841 25 Si 0.980 3.020 26 H -0.257 1.257 27 H -0.269 1.269 28 H -0.268 1.268 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.394 0.606 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.130 0.870 40 H 0.093 0.907 41 H 0.209 0.791 42 H 0.222 0.778 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.153 16.876 9.972 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.117 4.117 3 N -0.258 5.258 4 C 0.056 3.944 5 N -0.369 5.369 6 C 0.018 3.982 7 C -0.014 4.014 8 O -0.320 6.320 9 C -0.036 4.036 10 C -0.008 4.008 11 N -0.334 5.334 12 C 0.317 3.683 13 O -0.354 6.354 14 C -0.154 4.154 15 C -0.144 4.144 16 C 0.330 3.670 17 O -0.364 6.364 18 C -0.242 4.242 19 C -0.134 4.134 20 C -0.009 4.009 21 C -0.512 4.512 22 H 0.100 0.900 23 C -0.182 4.182 24 N -0.469 5.469 25 Si 0.802 3.198 26 H -0.181 1.181 27 H -0.194 1.194 28 H -0.193 1.193 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.228 0.772 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.148 0.852 40 H 0.111 0.889 41 H 0.226 0.774 42 H 0.239 0.761 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.657 17.584 9.575 23.168 hybrid contribution 0.137 -1.184 -0.445 1.272 sum 11.794 16.400 9.130 22.168 Atomic orbital electron populations 1.20231 0.89039 1.01577 1.01200 1.21317 0.96497 0.87319 1.06593 1.66454 1.08220 1.31121 1.19994 1.18075 0.88099 0.86571 1.01634 1.43631 1.04875 1.03508 1.84841 1.21233 0.80137 0.95997 1.00786 1.22725 1.00053 0.91776 0.86868 1.88062 1.80386 1.24450 1.39077 1.23013 0.99861 0.83022 0.97655 1.21889 0.97880 0.97945 0.83105 1.46793 1.24372 1.27357 1.34891 1.20172 0.86237 0.79367 0.82536 1.90886 1.26399 1.53066 1.65073 1.24851 0.92311 1.01451 0.96805 1.24864 1.01403 0.92036 0.96120 1.19995 0.79291 0.84993 0.82770 1.90784 1.54605 1.26906 1.64137 1.20961 0.99306 0.92436 1.11468 1.21296 0.95049 0.96517 1.00550 1.18515 0.92840 0.94120 0.95421 1.19561 1.02119 0.92673 1.36810 0.90038 1.26698 0.94700 1.04734 0.92036 1.69889 1.19809 1.32515 1.24652 0.85177 0.79251 0.76422 0.78964 1.18062 1.19413 1.19286 0.92155 0.92199 0.91353 0.77233 0.93832 0.90808 0.89716 0.91293 0.92295 0.89267 0.85246 0.88881 0.77383 0.76150 0.86416 0.86752 0.90544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.81 9.57 71.24 0.68 -2.13 16 2 C 0.02 1.11 6.86 43.23 0.30 1.41 16 3 N -0.54 -28.23 10.29 -179.37 -1.85 -30.08 16 4 C 0.29 14.12 7.64 133.31 1.02 15.14 16 5 N -0.73 -28.33 5.65 -344.85 -1.95 -30.28 16 6 C 0.14 4.30 5.26 86.38 0.45 4.75 16 7 C 0.06 1.36 6.07 71.98 0.44 1.80 16 8 O -0.40 -10.02 10.01 -148.98 -1.49 -11.51 16 9 C 0.04 0.72 6.28 71.98 0.45 1.17 16 10 C 0.11 1.92 6.21 86.38 0.54 2.45 16 11 N -0.59 -11.25 2.60 -762.72 -1.98 -13.24 16 12 C 0.53 11.68 7.80 86.86 0.68 12.36 16 13 O -0.48 -15.79 17.74 -3.42 -0.06 -15.85 16 14 C -0.13 -1.53 11.15 23.95 0.27 -1.26 16 15 C -0.12 -1.04 11.15 23.95 0.27 -0.77 16 16 C 0.54 8.83 8.04 86.86 0.70 9.53 16 17 O -0.49 -10.32 17.74 -3.43 -0.06 -10.38 16 18 C -0.22 -10.77 9.24 22.23 0.21 -10.56 16 19 C -0.11 -5.90 8.73 22.64 0.20 -5.70 16 20 C 0.00 -0.22 5.58 -21.18 -0.12 -0.33 16 21 C -0.48 -26.18 8.14 23.39 0.19 -25.99 16 22 H 0.08 4.24 6.86 -2.91 -0.02 4.22 16 23 C 0.03 1.57 5.19 85.23 0.44 2.02 16 24 N -0.84 -44.81 10.94 21.82 0.24 -44.57 16 25 Si 0.98 39.00 29.59 68.60 2.03 41.03 16 26 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 27 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 28 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 29 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.07 3.00 6.77 -2.39 -0.02 2.98 16 32 H 0.39 14.85 8.59 -92.71 -0.80 14.05 16 33 H 0.04 1.42 7.90 -2.39 -0.02 1.41 16 34 H 0.07 2.09 7.90 -2.39 -0.02 2.07 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.13 1.58 8.02 -2.38 -0.02 1.56 16 40 H 0.09 1.81 8.01 -2.39 -0.02 1.79 16 41 H 0.21 1.19 8.06 -2.91 -0.02 1.16 16 42 H 0.22 0.04 8.06 -2.91 -0.02 0.01 16 43 H 0.12 5.10 6.64 -2.91 -0.02 5.08 16 44 H 0.11 6.44 6.25 -2.91 -0.02 6.42 16 45 H 0.28 13.71 8.30 -92.71 -0.77 12.95 16 Total: -1.00 -77.88 389.01 1.82 -76.05 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.24 Total: 34.94 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: 6.71 Total: 3.87 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -5.54 Total: -118.16 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -1.61 Total: -37.73 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -77.88 1.82 -76.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161029794.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.650 kcal (2) G-P(sol) polarization free energy of solvation -77.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds