Wall clock time and date at job start Wed Apr 1 2020 02:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38674 * 119.27358 * 2 1 4 4 C 1.38015 * 119.62477 * 179.77017 * 3 2 1 5 5 C 1.41000 * 118.27771 * 0.49408 * 4 3 2 6 6 C 1.41024 * 120.70299 * 179.73087 * 5 4 3 7 7 H 1.08001 * 119.99456 * 204.91655 * 6 5 4 8 8 C 1.39944 * 119.99993 * 24.91680 * 6 5 4 9 9 N 1.30865 * 120.00097 * 14.47819 * 8 6 5 10 10 Si 1.86801 * 119.99824 * 194.48610 * 8 6 5 11 11 H 1.48500 * 109.47258 * 59.99518 * 10 8 6 12 12 H 1.48505 * 109.47266 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.46991 * 299.99689 * 10 8 6 14 14 C 1.41701 * 118.59215 * 359.74847 * 5 4 3 15 15 N 1.38095 * 119.90981 * 180.02562 * 14 5 4 16 16 C 1.46500 * 120.00392 * 179.97438 * 15 14 5 17 17 C 1.52993 * 109.47063 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.47584 * 65.00361 * 17 16 15 19 19 C 1.42896 * 114.00012 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.47113 * 179.97438 * 19 18 17 21 21 N 1.46498 * 109.47146 * 64.99490 * 20 19 18 22 22 C 1.34518 * 125.20532 * 269.69542 * 21 20 19 23 23 O 1.21405 * 125.79809 * 359.97438 * 22 21 20 24 24 C 1.47967 * 108.41353 * 179.85334 * 22 21 20 25 25 C 1.34322 * 106.79301 * 0.40950 * 24 22 21 26 26 C 1.34512 * 125.20883 * 90.00149 * 21 20 19 27 27 O 1.21404 * 125.79415 * 359.97438 * 26 21 20 28 28 N 1.31966 * 119.27237 * 180.27316 * 2 1 3 29 29 H 1.09001 * 109.46825 * 269.72868 * 1 2 3 30 30 H 1.08995 * 109.47574 * 29.72523 * 1 2 3 31 31 H 1.09006 * 109.47183 * 149.72878 * 1 2 3 32 32 H 1.07994 * 120.19211 * 0.02562 * 3 2 1 33 33 H 1.07994 * 120.85839 * 180.22194 * 4 3 2 34 34 H 0.96999 * 119.99800 * 180.02562 * 9 8 6 35 35 H 0.96999 * 119.99493 * 359.97438 * 15 14 5 36 36 H 1.09005 * 109.46756 * 300.00257 * 16 15 14 37 37 H 1.08999 * 109.47306 * 59.99797 * 16 15 14 38 38 H 1.09006 * 109.46780 * 185.00052 * 17 16 15 39 39 H 1.08999 * 109.46930 * 304.99386 * 17 16 15 40 40 H 1.09001 * 109.47037 * 299.99171 * 19 18 17 41 41 H 1.09003 * 109.47755 * 59.99283 * 19 18 17 42 42 H 1.09002 * 109.47014 * 184.99686 * 20 19 18 43 43 H 1.08994 * 109.47043 * 304.99627 * 20 19 18 44 44 H 1.08000 * 126.60646 * 180.13419 * 24 22 21 45 45 H 1.07995 * 126.60787 * 179.79898 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2096 0.0000 4 6 3.5652 1.2181 0.0048 5 6 4.2408 -0.0195 -0.0011 6 6 5.6502 -0.0705 -0.0023 7 1 6.1588 -0.9360 -0.4005 8 6 6.3895 1.0004 0.5125 9 7 5.7995 1.9113 1.2438 10 14 8.2186 1.1296 0.1557 11 1 8.4316 1.2188 -1.3113 12 1 8.7659 2.3454 0.8097 13 1 8.9122 -0.0722 0.6844 14 6 3.4737 -1.2109 -0.0062 15 7 4.1073 -2.4378 -0.0115 16 6 3.3162 -3.6709 -0.0163 17 6 4.2549 -4.8790 -0.0210 18 8 4.9968 -4.9107 1.1999 19 6 5.9089 -6.0064 1.2975 20 6 6.6447 -5.9396 2.6373 21 7 5.6882 -6.1328 3.7300 22 6 5.0136 -5.1499 4.3530 23 8 5.0963 -3.9643 4.1052 24 6 4.1515 -5.7591 5.3898 25 6 4.3625 -7.0847 5.3401 26 6 5.3545 -7.3198 4.2677 27 8 5.7925 -8.4006 3.9301 28 7 2.1523 -1.1511 -0.0055 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3634 0.8924 -0.5095 31 1 -0.3634 -0.8876 -0.5181 32 1 1.6365 2.1398 0.0004 33 1 4.1134 2.1485 0.0085 34 1 6.3120 2.6537 1.6003 35 1 5.0763 -2.4832 -0.0121 36 1 2.6879 -3.7028 0.8739 37 1 2.6872 -3.6956 -0.9061 38 1 3.6693 -5.7937 -0.1141 39 1 4.9432 -4.8010 -0.8626 40 1 5.3580 -6.9446 1.2316 41 1 6.6315 -5.9514 0.4833 42 1 7.4025 -6.7223 2.6750 43 1 7.1229 -4.9657 2.7410 44 1 3.4847 -5.2379 6.0607 45 1 3.8972 -7.8347 5.9625 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161030282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:09 Heat of formation + Delta-G solvation = -32.044208 kcal Electronic energy + Delta-G solvation = -29940.074202 eV Core-core repulsion = 25731.316265 eV Total energy + Delta-G solvation = -4208.757937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.29339 -38.67855 -38.60556 -37.99977 -36.20812 -34.97023 -34.06726 -33.81486 -31.06101 -30.33597 -29.36756 -28.07832 -27.04866 -25.43474 -23.88617 -23.63765 -22.31528 -21.71820 -20.65218 -20.33796 -20.06677 -17.73165 -17.15038 -16.88520 -16.73123 -16.27719 -16.09943 -15.82016 -15.44034 -14.99634 -14.66234 -14.23622 -14.12737 -14.07016 -14.00198 -13.74171 -13.68943 -13.24034 -13.00900 -12.53407 -12.42157 -12.11695 -12.00526 -11.64845 -11.54720 -11.42478 -11.33600 -11.06168 -10.98074 -10.91040 -10.71855 -10.43591 -10.43077 -10.33312 -9.88338 -9.69473 -9.62814 -9.19179 -8.76016 -7.98794 -7.76509 -6.68931 -6.38503 -4.11720 -0.08975 2.20210 2.38624 2.72235 2.80396 3.09739 3.11794 3.18728 3.31809 3.56497 3.67564 3.98696 3.99947 4.47744 4.75354 4.76769 4.79803 4.96894 5.06470 5.08228 5.12045 5.29747 5.40231 5.40584 5.43716 5.50685 5.63006 5.75542 5.94666 6.20028 6.21204 6.40376 6.50175 6.50986 6.52968 6.63308 6.90741 7.03703 7.05229 7.19974 7.21801 7.31787 7.53661 7.76196 7.88526 8.10836 8.38762 8.64339 8.76149 8.88554 9.10884 9.89171 10.30591 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009577 B = 0.003376 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.990533 B = 8291.349366 C = 9667.382284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.025 3.975 3 C -0.188 4.188 4 C -0.124 4.124 5 C 0.029 3.971 6 C -0.451 4.451 7 H 0.072 0.928 8 C 0.075 3.925 9 N -0.800 5.800 10 Si 0.907 3.093 11 H -0.266 1.266 12 H -0.279 1.279 13 H -0.267 1.267 14 C 0.312 3.688 15 N -0.723 5.723 16 C 0.152 3.848 17 C 0.052 3.948 18 O -0.369 6.369 19 C 0.042 3.958 20 C 0.118 3.882 21 N -0.584 5.584 22 C 0.531 3.469 23 O -0.416 6.416 24 C -0.129 4.129 25 C -0.156 4.156 26 C 0.543 3.457 27 O -0.472 6.472 28 N -0.532 5.532 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.127 0.873 34 H 0.279 0.721 35 H 0.404 0.596 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.181 0.819 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.035 -15.694 5.409 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.109 4.109 3 C -0.211 4.211 4 C -0.150 4.150 5 C 0.022 3.978 6 C -0.483 4.483 7 H 0.090 0.910 8 C -0.142 4.142 9 N -0.427 5.427 10 Si 0.732 3.268 11 H -0.191 1.191 12 H -0.204 1.204 13 H -0.192 1.192 14 C 0.074 3.926 15 N -0.363 5.363 16 C 0.026 3.974 17 C -0.025 4.025 18 O -0.288 6.288 19 C -0.036 4.036 20 C -0.002 4.002 21 N -0.328 5.328 22 C 0.317 3.683 23 O -0.283 6.283 24 C -0.151 4.151 25 C -0.178 4.178 26 C 0.332 3.668 27 O -0.344 6.344 28 N -0.251 5.251 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.145 0.855 34 H 0.089 0.911 35 H 0.241 0.759 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.199 0.801 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -0.315 -16.069 5.290 16.920 hybrid contribution 1.711 0.686 -0.220 1.856 sum 1.396 -15.383 5.070 16.257 Atomic orbital electron populations 1.20277 0.91943 1.00534 1.00298 1.19934 0.94201 0.88064 1.08687 1.21210 0.95400 0.96543 1.07922 1.21384 0.92068 0.98303 1.03255 1.17898 0.93866 0.90082 0.95927 1.19079 0.90797 1.02632 1.35778 0.90991 1.25778 1.00635 0.94932 0.92807 1.69797 1.38246 1.10626 1.24029 0.86391 0.82438 0.78411 0.79559 1.19071 1.20447 1.19189 1.18406 0.87870 0.85586 1.00713 1.43577 1.07452 1.00947 1.84306 1.20865 0.92593 0.82716 1.01241 1.22865 0.94475 0.98605 0.86561 1.88112 1.55151 1.46951 1.38599 1.22851 0.93365 0.90556 0.96821 1.21763 0.90066 1.05188 0.83214 1.46614 1.42028 1.09384 1.34751 1.19379 0.80633 0.85959 0.82282 1.90954 1.60206 1.14264 1.62859 1.24756 0.97679 0.95490 0.97158 1.24551 0.97392 0.98016 0.97801 1.19418 0.81544 0.83364 0.82452 1.90780 1.54446 1.25892 1.63309 1.66334 1.08397 1.29843 1.20515 0.93305 0.93000 0.92890 0.88900 0.85496 0.91051 0.75866 0.92689 0.91927 0.92812 0.92878 0.93038 0.91379 0.87490 0.87530 0.80138 0.80319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.38 10.15 36.01 0.37 -1.01 16 2 C 0.03 0.61 6.79 -82.37 -0.56 0.05 16 3 C -0.19 -4.64 9.69 -39.50 -0.38 -5.02 16 4 C -0.12 -3.33 8.79 -38.62 -0.34 -3.67 16 5 C 0.03 0.80 5.60 -106.47 -0.60 0.20 16 6 C -0.45 -11.95 8.53 -37.89 -0.32 -12.28 16 7 H 0.07 1.80 6.67 -52.49 -0.35 1.45 16 8 C 0.07 1.90 5.23 -17.32 -0.09 1.81 16 9 N -0.80 -21.19 10.83 55.55 0.60 -20.59 16 10 Si 0.91 19.00 29.58 -169.99 -5.03 13.97 16 11 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 12 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 13 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 14 C 0.31 8.02 7.52 -155.02 -1.17 6.85 16 15 N -0.72 -15.86 5.56 -59.97 -0.33 -16.19 16 16 C 0.15 2.73 6.06 -4.05 -0.02 2.71 16 17 C 0.05 0.73 6.07 37.15 0.23 0.95 16 18 O -0.37 -5.64 10.01 -35.23 -0.35 -5.99 16 19 C 0.04 0.47 6.28 37.16 0.23 0.71 16 20 C 0.12 1.27 6.21 -4.04 -0.03 1.25 16 21 N -0.58 -6.80 2.60 -117.53 -0.31 -7.11 16 22 C 0.53 6.91 7.80 -12.39 -0.10 6.81 16 23 O -0.42 -7.48 17.74 5.45 0.10 -7.39 16 24 C -0.13 -1.06 11.15 -36.98 -0.41 -1.47 16 25 C -0.16 -1.11 11.15 -36.98 -0.41 -1.52 16 26 C 0.54 5.73 8.04 -12.39 -0.10 5.63 16 27 O -0.47 -6.01 17.74 5.45 0.10 -5.91 16 28 N -0.53 -13.41 9.44 -8.11 -0.08 -13.49 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.87 8.07 -51.93 -0.42 0.45 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.13 3.49 6.17 -52.49 -0.32 3.17 16 34 H 0.28 6.77 8.30 -40.82 -0.34 6.44 16 35 H 0.40 8.77 6.67 -40.82 -0.27 8.49 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.11 0.90 8.02 -51.93 -0.42 0.48 16 43 H 0.11 1.25 8.01 -51.93 -0.42 0.83 16 44 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 45 H 0.18 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 391.12 15.07 5.89 5.89 Total: -1.00 -34.37 391.12 -9.09 -43.47 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.98 Total: 11.33 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -3.70 Total: 2.00 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: -0.11 Total: -57.37 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.16 Total: -19.29 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.37 -9.09 -43.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161030282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.423 kcal (2) G-P(sol) polarization free energy of solvation -34.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds