Wall clock time and date at job start Wed Apr 1 2020 02:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38674 * 119.27358 * 2 1 4 4 C 1.38015 * 119.62477 * 179.77017 * 3 2 1 5 5 C 1.41000 * 118.27771 * 0.49408 * 4 3 2 6 6 C 1.41024 * 120.70299 * 179.73087 * 5 4 3 7 7 H 1.08001 * 119.99456 * 204.91655 * 6 5 4 8 8 C 1.39944 * 119.99993 * 24.91680 * 6 5 4 9 9 N 1.30865 * 120.00097 * 14.47819 * 8 6 5 10 10 Si 1.86801 * 119.99824 * 194.48610 * 8 6 5 11 11 H 1.48500 * 109.47258 * 59.99518 * 10 8 6 12 12 H 1.48505 * 109.47266 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.46991 * 299.99689 * 10 8 6 14 14 C 1.41701 * 118.59215 * 359.74847 * 5 4 3 15 15 N 1.38095 * 119.90981 * 180.02562 * 14 5 4 16 16 C 1.46500 * 120.00392 * 179.97438 * 15 14 5 17 17 C 1.52993 * 109.47063 * 180.02562 * 16 15 14 18 18 O 1.42898 * 109.47584 * 65.00361 * 17 16 15 19 19 C 1.42896 * 114.00012 * 180.02562 * 18 17 16 20 20 C 1.53004 * 109.47113 * 179.97438 * 19 18 17 21 21 N 1.46498 * 109.47146 * 64.99490 * 20 19 18 22 22 C 1.34518 * 125.20532 * 269.69542 * 21 20 19 23 23 O 1.21405 * 125.79809 * 359.97438 * 22 21 20 24 24 C 1.47967 * 108.41353 * 179.85334 * 22 21 20 25 25 C 1.34322 * 106.79301 * 0.40950 * 24 22 21 26 26 C 1.34512 * 125.20883 * 90.00149 * 21 20 19 27 27 O 1.21404 * 125.79415 * 359.97438 * 26 21 20 28 28 N 1.31966 * 119.27237 * 180.27316 * 2 1 3 29 29 H 1.09001 * 109.46825 * 269.72868 * 1 2 3 30 30 H 1.08995 * 109.47574 * 29.72523 * 1 2 3 31 31 H 1.09006 * 109.47183 * 149.72878 * 1 2 3 32 32 H 1.07994 * 120.19211 * 0.02562 * 3 2 1 33 33 H 1.07994 * 120.85839 * 180.22194 * 4 3 2 34 34 H 0.96999 * 119.99800 * 180.02562 * 9 8 6 35 35 H 0.96999 * 119.99493 * 359.97438 * 15 14 5 36 36 H 1.09005 * 109.46756 * 300.00257 * 16 15 14 37 37 H 1.08999 * 109.47306 * 59.99797 * 16 15 14 38 38 H 1.09006 * 109.46780 * 185.00052 * 17 16 15 39 39 H 1.08999 * 109.46930 * 304.99386 * 17 16 15 40 40 H 1.09001 * 109.47037 * 299.99171 * 19 18 17 41 41 H 1.09003 * 109.47755 * 59.99283 * 19 18 17 42 42 H 1.09002 * 109.47014 * 184.99686 * 20 19 18 43 43 H 1.08994 * 109.47043 * 304.99627 * 20 19 18 44 44 H 1.08000 * 126.60646 * 180.13419 * 24 22 21 45 45 H 1.07995 * 126.60787 * 179.79898 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2096 0.0000 4 6 3.5652 1.2181 0.0048 5 6 4.2408 -0.0195 -0.0011 6 6 5.6502 -0.0705 -0.0023 7 1 6.1588 -0.9360 -0.4005 8 6 6.3895 1.0004 0.5125 9 7 5.7995 1.9113 1.2438 10 14 8.2186 1.1296 0.1557 11 1 8.4316 1.2188 -1.3113 12 1 8.7659 2.3454 0.8097 13 1 8.9122 -0.0722 0.6844 14 6 3.4737 -1.2109 -0.0062 15 7 4.1073 -2.4378 -0.0115 16 6 3.3162 -3.6709 -0.0163 17 6 4.2549 -4.8790 -0.0210 18 8 4.9968 -4.9107 1.1999 19 6 5.9089 -6.0064 1.2975 20 6 6.6447 -5.9396 2.6373 21 7 5.6882 -6.1328 3.7300 22 6 5.0136 -5.1499 4.3530 23 8 5.0963 -3.9643 4.1052 24 6 4.1515 -5.7591 5.3898 25 6 4.3625 -7.0847 5.3401 26 6 5.3545 -7.3198 4.2677 27 8 5.7925 -8.4006 3.9301 28 7 2.1523 -1.1511 -0.0055 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3634 0.8924 -0.5095 31 1 -0.3634 -0.8876 -0.5181 32 1 1.6365 2.1398 0.0004 33 1 4.1134 2.1485 0.0085 34 1 6.3120 2.6537 1.6003 35 1 5.0763 -2.4832 -0.0121 36 1 2.6879 -3.7028 0.8739 37 1 2.6872 -3.6956 -0.9061 38 1 3.6693 -5.7937 -0.1141 39 1 4.9432 -4.8010 -0.8626 40 1 5.3580 -6.9446 1.2316 41 1 6.6315 -5.9514 0.4833 42 1 7.4025 -6.7223 2.6750 43 1 7.1229 -4.9657 2.7410 44 1 3.4847 -5.2379 6.0607 45 1 3.8972 -7.8347 5.9625 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161030282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:08 Heat of formation + Delta-G solvation = -55.084428 kcal Electronic energy + Delta-G solvation = -29941.073301 eV Core-core repulsion = 25731.316265 eV Total energy + Delta-G solvation = -4209.757036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.17598 -40.43690 -39.69265 -39.19473 -37.22707 -36.50476 -35.93651 -34.82275 -32.77061 -32.06725 -30.53452 -29.64837 -28.71173 -26.29286 -25.70581 -24.54183 -23.81949 -22.53501 -22.52422 -22.12923 -20.94603 -19.12151 -18.65379 -17.94345 -17.88231 -17.71065 -17.39565 -17.03202 -16.68381 -16.55760 -15.93562 -15.60059 -15.35150 -15.29848 -15.08580 -14.92638 -14.88097 -14.75063 -14.38366 -14.25669 -13.79459 -13.61248 -13.33317 -13.18709 -13.09291 -12.98430 -12.91260 -12.69203 -12.53132 -12.22532 -12.05638 -11.93076 -11.61196 -11.29788 -11.16742 -11.09079 -10.80339 -10.68087 -10.57205 -9.95029 -9.74118 -8.60680 -8.27320 -6.11015 -0.87448 0.92872 1.24150 1.36550 1.37152 1.48128 1.52942 1.63953 1.79057 2.22066 2.57290 2.79024 2.87071 2.94564 3.21719 3.79474 3.82061 3.92867 4.03861 4.15558 4.20222 4.25678 4.28390 4.38119 4.44373 4.51183 4.54598 4.60034 4.73963 4.75011 4.78451 4.87534 4.88937 4.98584 5.02739 5.07870 5.20786 5.27067 5.44953 5.62656 5.82612 5.91497 6.15183 6.17014 6.18848 6.43955 6.60534 6.78525 6.86018 6.93198 7.17342 7.95382 8.41488 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009577 B = 0.003376 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2922.990533 B = 8291.349366 C = 9667.382284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.021 3.979 3 C -0.203 4.203 4 C -0.146 4.146 5 C -0.007 4.007 6 C -0.478 4.478 7 H 0.076 0.924 8 C 0.031 3.969 9 N -0.835 5.835 10 Si 0.981 3.019 11 H -0.259 1.259 12 H -0.271 1.271 13 H -0.262 1.262 14 C 0.301 3.699 15 N -0.719 5.719 16 C 0.153 3.847 17 C 0.061 3.939 18 O -0.401 6.401 19 C 0.041 3.959 20 C 0.111 3.889 21 N -0.591 5.591 22 C 0.523 3.477 23 O -0.484 6.484 24 C -0.133 4.133 25 C -0.121 4.121 26 C 0.539 3.461 27 O -0.490 6.490 28 N -0.544 5.544 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.284 0.716 35 H 0.403 0.597 36 H 0.032 0.968 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.132 0.868 43 H 0.088 0.912 44 H 0.210 0.790 45 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.452 -17.919 5.759 18.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C -0.225 4.225 4 C -0.172 4.172 5 C -0.014 4.014 6 C -0.510 4.510 7 H 0.094 0.906 8 C -0.182 4.182 9 N -0.463 5.463 10 Si 0.802 3.198 11 H -0.183 1.183 12 H -0.196 1.196 13 H -0.186 1.186 14 C 0.062 3.938 15 N -0.358 5.358 16 C 0.028 3.972 17 C -0.016 4.016 18 O -0.321 6.321 19 C -0.036 4.036 20 C -0.009 4.009 21 N -0.334 5.334 22 C 0.313 3.687 23 O -0.355 6.355 24 C -0.154 4.154 25 C -0.141 4.141 26 C 0.330 3.670 27 O -0.364 6.364 28 N -0.263 5.263 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.094 0.906 35 H 0.239 0.761 36 H 0.051 0.949 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.149 0.851 43 H 0.107 0.893 44 H 0.227 0.773 45 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.741 -18.359 5.639 19.220 hybrid contribution 1.776 1.271 -0.323 2.208 sum 1.035 -17.089 5.316 17.926 Atomic orbital electron populations 1.20337 0.88100 1.02339 1.01697 1.20817 0.96818 0.87477 1.06187 1.21483 0.94764 0.98119 1.08152 1.21428 0.93305 0.97851 1.04662 1.18265 0.94816 0.90964 0.97358 1.19327 0.91024 1.03703 1.36926 0.90565 1.26667 1.05406 0.94131 0.91994 1.69877 1.40228 1.11319 1.24869 0.85271 0.76294 0.78654 0.79570 1.18334 1.19595 1.18592 1.18730 0.88330 0.86611 1.00083 1.43715 1.07646 1.01183 1.83235 1.20981 0.93144 0.82797 1.00285 1.22774 0.94424 0.97590 0.86776 1.88084 1.56129 1.48794 1.39081 1.23017 0.93268 0.89669 0.97624 1.21879 0.90578 1.05157 0.83261 1.46795 1.41944 1.09845 1.34832 1.20265 0.80436 0.85339 0.82638 1.90920 1.62602 1.16828 1.65163 1.24840 0.98082 0.95682 0.96796 1.24868 0.95110 0.98178 0.95992 1.20000 0.81707 0.82496 0.82819 1.90775 1.55213 1.26398 1.64005 1.66514 1.08078 1.30419 1.21301 0.91935 0.90416 0.91897 0.86486 0.87009 0.90554 0.76076 0.94928 0.91382 0.89825 0.91456 0.92072 0.89360 0.85058 0.89309 0.77349 0.75882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.41 10.15 71.24 0.72 -1.68 16 2 C 0.02 1.02 6.79 42.64 0.29 1.31 16 3 C -0.20 -10.13 9.69 22.32 0.22 -9.91 16 4 C -0.15 -8.18 8.79 22.89 0.20 -7.98 16 5 C -0.01 -0.40 5.60 -21.06 -0.12 -0.52 16 6 C -0.48 -26.35 8.53 23.37 0.20 -26.15 16 7 H 0.08 3.96 6.67 -2.91 -0.02 3.94 16 8 C 0.03 1.62 5.23 85.25 0.45 2.07 16 9 N -0.84 -45.89 10.83 21.83 0.24 -45.65 16 10 Si 0.98 39.71 29.58 68.60 2.03 41.74 16 11 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 12 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 13 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 14 C 0.30 15.95 7.52 134.05 1.01 16.96 16 15 N -0.72 -32.47 5.56 -343.65 -1.91 -34.37 16 16 C 0.15 5.55 6.06 86.38 0.52 6.07 16 17 C 0.06 1.64 6.07 71.98 0.44 2.08 16 18 O -0.40 -12.23 10.01 -148.98 -1.49 -13.72 16 19 C 0.04 0.89 6.28 71.98 0.45 1.35 16 20 C 0.11 2.40 6.21 86.38 0.54 2.93 16 21 N -0.59 -13.51 2.60 -762.72 -1.98 -15.50 16 22 C 0.52 13.82 7.80 86.86 0.68 14.50 16 23 O -0.48 -18.47 17.74 -3.42 -0.06 -18.54 16 24 C -0.13 -1.94 11.15 23.96 0.27 -1.67 16 25 C -0.12 -1.31 11.15 23.96 0.27 -1.05 16 26 C 0.54 10.36 8.04 86.86 0.70 11.05 16 27 O -0.49 -11.47 17.74 -3.42 -0.06 -11.53 16 28 N -0.54 -27.71 9.44 -179.57 -1.70 -29.41 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.08 2.38 8.07 -2.39 -0.02 2.36 16 31 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 32 H 0.12 5.10 8.06 -2.91 -0.02 5.08 16 33 H 0.11 6.48 6.17 -2.91 -0.02 6.46 16 34 H 0.28 14.25 8.30 -92.71 -0.77 13.48 16 35 H 0.40 18.09 6.67 -92.71 -0.62 17.47 16 36 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.13 2.09 8.02 -2.39 -0.02 2.07 16 43 H 0.09 2.21 8.01 -2.39 -0.02 2.19 16 44 H 0.21 1.79 8.06 -2.91 -0.02 1.76 16 45 H 0.22 0.44 8.06 -2.91 -0.02 0.42 16 Total: -1.00 -79.55 391.12 2.30 -77.25 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: 0.41 Total: 40.37 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 6.83 Total: 9.36 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -5.35 Total: -124.93 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -1.61 Total: -43.79 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -79.55 2.30 -77.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161030282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.167 kcal (2) G-P(sol) polarization free energy of solvation -79.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds