Wall clock time and date at job start Wed Apr 1 2020 02:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35610 * 117.00086 * 2 1 4 4 C 1.39160 * 120.50535 * 0.02562 * 3 2 1 5 5 C 1.38303 * 118.62996 * 179.72033 * 4 3 2 6 6 C 1.39940 * 119.59522 * 0.48381 * 5 4 3 7 7 N 1.38907 * 119.49781 * 179.78408 * 6 5 4 8 8 C 1.46498 * 119.99684 * 359.72871 * 7 6 5 9 9 C 1.50712 * 109.46870 * 179.97438 * 8 7 6 10 10 C 1.39134 * 120.80948 * 269.71556 * 9 8 7 11 11 O 1.35919 * 120.47423 * 0.25317 * 10 9 8 12 12 C 1.38712 * 119.05333 * 180.27062 * 10 9 8 13 13 C 1.50699 * 119.65685 * 179.97438 * 12 10 9 14 14 N 1.31841 * 120.67995 * 0.02562 * 12 10 9 15 15 C 1.31841 * 121.78108 * 359.97438 * 14 12 10 16 16 C 1.38251 * 120.88950 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.39162 * 180.02562 * 16 15 14 18 18 O 1.42899 * 109.47026 * 359.97438 * 17 16 15 19 19 N 1.31869 * 121.00939 * 359.50483 * 6 5 4 20 20 C 1.33824 * 121.46845 * 0.25709 * 19 6 5 21 21 C 1.40918 * 119.84730 * 180.02562 * 20 19 6 22 22 H 1.08004 * 120.00021 * 173.60066 * 21 20 19 23 23 C 1.40028 * 120.00041 * 353.59574 * 21 20 19 24 24 N 1.30777 * 119.99833 * 6.27791 * 23 21 20 25 25 Si 1.86798 * 120.00135 * 186.28204 * 23 21 20 26 26 H 1.48499 * 109.47185 * 94.98284 * 25 23 21 27 27 H 1.48497 * 109.46949 * 214.98516 * 25 23 21 28 28 H 1.48497 * 109.46872 * 334.98533 * 25 23 21 29 29 H 1.09002 * 109.47390 * 300.00091 * 1 2 3 30 30 H 1.09000 * 109.47091 * 59.99634 * 1 2 3 31 31 H 1.08998 * 109.47540 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.68155 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.20630 * 180.26780 * 5 4 3 34 34 H 0.97005 * 119.99821 * 179.72462 * 7 6 5 35 35 H 1.08993 * 109.47496 * 59.99942 * 8 7 6 36 36 H 1.08999 * 109.46788 * 299.99188 * 8 7 6 37 37 H 0.96702 * 113.99683 * 89.99808 * 11 10 9 38 38 H 1.09003 * 109.46896 * 270.02133 * 13 12 10 39 39 H 1.09001 * 109.47490 * 30.02853 * 13 12 10 40 40 H 1.09004 * 109.46953 * 150.02391 * 13 12 10 41 41 H 1.08008 * 119.55570 * 180.02562 * 15 14 12 42 42 H 1.08995 * 109.47394 * 119.97790 * 17 16 15 43 43 H 1.09003 * 109.47443 * 239.97852 * 17 16 15 44 44 H 0.96701 * 114.00178 * 180.02562 * 18 17 16 45 45 H 0.97000 * 120.00279 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2971 2.3820 0.0005 5 6 1.9650 3.5931 0.0064 6 6 3.3643 3.6107 0.0014 7 7 4.0330 4.8282 0.0028 8 6 3.2735 6.0810 0.0035 9 6 4.2282 7.2471 0.0056 10 6 4.6740 7.8010 1.2016 11 8 4.2586 7.2949 2.3927 12 6 5.5480 8.8774 1.1610 13 6 6.0389 9.4882 2.4482 14 7 5.9528 9.3721 0.0080 15 6 5.5495 8.8707 -1.1427 16 6 4.6785 7.7978 -1.1831 17 6 4.2252 7.2332 -2.5047 18 8 4.8277 7.9711 -3.5698 19 7 4.0578 2.4891 0.0009 20 6 3.4544 1.2946 0.0000 21 6 4.2291 0.1175 0.0000 22 1 3.7495 -0.8446 0.1035 23 6 5.6208 0.1953 -0.1343 24 7 6.2133 1.3611 -0.1363 25 14 6.6308 -1.3662 -0.3108 26 1 6.8624 -1.6458 -1.7507 27 1 7.9359 -1.1917 0.3758 28 1 5.8969 -2.5023 0.3022 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2176 2.3479 0.0005 33 1 1.4101 4.5197 0.0114 34 1 5.0028 4.8489 0.0034 35 1 2.6453 6.1246 0.8931 36 1 2.6464 6.1261 -0.8869 37 1 4.8241 6.5914 2.7397 38 1 5.3592 10.2829 2.7557 39 1 6.0765 8.7222 3.2228 40 1 7.0363 9.9012 2.2972 41 1 5.9043 9.3039 -2.0663 42 1 4.5225 6.1868 -2.5740 43 1 3.1403 7.3083 -2.5791 44 1 4.5797 7.6622 -4.4519 45 1 7.1774 1.4150 -0.2290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167818872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:58 Heat of formation + Delta-G solvation = -50.043088 kcal Electronic energy + Delta-G solvation = -29977.026103 eV Core-core repulsion = 25767.487676 eV Total energy + Delta-G solvation = -4209.538427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.89312 -38.85941 -37.61943 -37.13887 -36.69002 -35.31586 -33.70790 -32.66726 -31.24151 -30.34661 -29.12723 -28.51204 -26.59626 -25.84001 -25.24553 -24.92143 -22.54841 -21.61563 -20.86460 -20.28702 -18.19859 -18.14461 -17.48367 -16.88779 -16.51923 -16.36623 -15.78456 -15.59003 -15.06360 -14.91680 -14.76523 -14.65318 -14.26347 -14.09187 -13.77962 -13.69152 -13.25311 -12.86970 -12.63869 -12.53456 -12.41923 -12.38545 -12.14767 -11.97437 -11.82065 -11.63065 -11.29179 -11.23520 -11.20021 -10.61406 -10.57715 -10.48546 -10.44649 -9.87060 -9.48014 -9.45047 -9.40116 -8.65032 -8.52272 -8.05902 -7.72574 -6.43755 -6.36308 -4.40005 0.91876 0.99582 2.77891 3.07692 3.10116 3.14849 3.23415 3.45643 3.78702 3.96246 4.14162 4.17470 4.31025 4.50988 4.62120 4.70071 4.77695 4.87786 5.17592 5.26057 5.36493 5.39336 5.47493 5.52296 5.65214 5.77251 5.77858 5.81825 5.92367 5.93436 5.95186 6.00417 6.06452 6.23599 6.34809 6.49675 6.62707 6.74470 7.15866 7.23333 7.38132 7.42166 7.48166 7.64289 7.90301 8.13048 8.23942 8.37256 8.59552 8.75054 9.12290 10.11721 10.30252 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010516 B = 0.003129 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.994689 B = 8945.984666 C = 9670.578513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.074 4.074 4 C -0.114 4.114 5 C -0.345 4.345 6 C 0.393 3.607 7 N -0.734 5.734 8 C 0.183 3.817 9 C -0.074 4.074 10 C 0.077 3.923 11 O -0.484 6.484 12 C 0.098 3.902 13 C -0.096 4.096 14 N -0.469 5.469 15 C 0.112 3.888 16 C -0.115 4.115 17 C 0.121 3.879 18 O -0.572 6.572 19 N -0.512 5.512 20 C 0.289 3.711 21 C -0.412 4.412 22 H 0.091 0.909 23 C 0.069 3.931 24 N -0.714 5.714 25 Si 0.907 3.093 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.260 1.260 29 H 0.037 0.963 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.395 0.605 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.395 0.605 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.168 0.832 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.387 0.613 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 10.934 -0.953 11.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.225 6.225 3 C -0.122 4.122 4 C -0.139 4.139 5 C -0.372 4.372 6 C 0.156 3.844 7 N -0.372 5.372 8 C 0.057 3.943 9 C -0.083 4.083 10 C 0.029 3.971 11 O -0.293 6.293 12 C -0.041 4.041 13 C -0.154 4.154 14 N -0.179 5.179 15 C -0.045 4.045 16 C -0.118 4.118 17 C 0.043 3.957 18 O -0.378 6.378 19 N -0.235 5.235 20 C 0.161 3.839 21 C -0.444 4.444 22 H 0.109 0.891 23 C -0.156 4.156 24 N -0.336 5.336 25 Si 0.732 3.268 26 H -0.195 1.195 27 H -0.202 1.202 28 H -0.184 1.184 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.230 0.770 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.253 0.747 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.185 0.815 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.235 0.765 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.660 12.395 -0.476 12.421 hybrid contribution -1.024 -1.783 -0.548 2.128 sum -1.683 10.612 -1.024 10.793 Atomic orbital electron populations 1.22689 0.82147 1.01544 0.99658 1.85922 1.17866 1.27872 1.90851 1.20046 0.93444 0.83140 1.15538 1.20671 0.97310 0.92340 1.03530 1.20332 0.92749 0.96341 1.27771 1.18405 0.87614 0.86421 0.91967 1.43933 1.07604 1.00825 1.84836 1.19827 0.91876 0.80461 1.02106 1.20540 0.98432 0.97478 0.91865 1.19015 0.96652 0.95720 0.85666 1.84777 1.54515 1.56790 1.33250 1.21709 0.93581 0.93926 0.94850 1.20586 1.01860 1.00991 0.91932 1.67590 1.23550 1.29063 0.97708 1.22595 0.93380 0.92521 0.95987 1.20543 0.99181 0.97823 0.94217 1.20838 0.96304 0.94857 0.83751 1.86341 1.73415 1.60578 1.17482 1.68359 1.34763 0.94919 1.25436 1.17746 0.85008 0.90967 0.90177 1.19551 0.90932 0.93296 1.40667 0.89059 1.26071 0.98625 0.97172 0.93773 1.70158 1.10090 1.24676 1.28715 0.86308 0.79053 0.82289 0.79179 1.19533 1.20247 1.18381 0.94473 0.94500 0.90156 0.88250 0.89063 0.77040 0.90976 0.92002 0.74738 0.90413 0.90587 0.90586 0.81533 0.90859 0.91761 0.76549 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.83 101.05 0.99 1.60 16 2 O -0.31 -7.15 9.62 -18.53 -0.18 -7.33 16 3 C -0.07 -1.84 6.74 -38.10 -0.26 -2.10 16 4 C -0.11 -2.56 9.12 -39.22 -0.36 -2.92 16 5 C -0.35 -7.62 9.33 -38.92 -0.36 -7.98 16 6 C 0.39 9.05 7.65 -155.26 -1.19 7.87 16 7 N -0.73 -13.67 5.72 -61.53 -0.35 -14.03 16 8 C 0.18 2.78 4.46 -5.19 -0.02 2.76 16 9 C -0.07 -1.04 5.30 -104.18 -0.55 -1.60 16 10 C 0.08 1.05 6.68 -39.07 -0.26 0.79 16 11 O -0.48 -6.11 11.73 -19.49 -0.23 -6.33 16 12 C 0.10 1.29 6.80 -82.41 -0.56 0.73 16 13 C -0.10 -0.98 9.96 36.01 0.36 -0.62 16 14 N -0.47 -6.65 10.27 -9.35 -0.10 -6.74 16 15 C 0.11 1.53 10.54 -17.54 -0.18 1.34 16 16 C -0.11 -1.54 5.89 -104.51 -0.62 -2.16 16 17 C 0.12 1.41 6.25 36.00 0.22 1.64 16 18 O -0.57 -5.92 12.17 -35.23 -0.43 -6.35 16 19 N -0.51 -13.51 7.91 -10.20 -0.08 -13.59 16 20 C 0.29 7.87 6.55 -84.85 -0.56 7.31 16 21 C -0.41 -11.07 8.92 -37.90 -0.34 -11.41 16 22 H 0.09 2.40 7.33 -52.48 -0.38 2.01 16 23 C 0.07 1.72 5.49 -17.33 -0.10 1.63 16 24 N -0.71 -18.38 11.48 55.55 0.64 -17.75 16 25 Si 0.91 18.57 29.56 -169.99 -5.03 13.54 16 26 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 27 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 28 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 29 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 30 H 0.04 0.58 7.69 -51.93 -0.40 0.18 16 31 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.10 1.94 6.43 -52.48 -0.34 1.61 16 33 H 0.09 1.79 6.67 -52.48 -0.35 1.44 16 34 H 0.40 7.56 8.58 -40.82 -0.35 7.21 16 35 H 0.07 1.15 7.38 -51.93 -0.38 0.77 16 36 H 0.06 0.91 6.58 -51.93 -0.34 0.57 16 37 H 0.40 3.91 9.06 45.56 0.41 4.33 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.68 7.52 -51.93 -0.39 0.28 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.17 2.08 7.01 -52.48 -0.37 1.71 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.06 0.68 7.57 -51.93 -0.39 0.29 16 44 H 0.39 2.29 9.12 45.56 0.42 2.71 16 45 H 0.27 6.33 8.30 -40.82 -0.34 5.99 16 LS Contribution 378.79 15.07 5.71 5.71 Total: -1.00 -32.02 378.79 -7.91 -39.93 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -4.10 Total: 16.05 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -3.77 Total: -3.11 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.11 Total: -52.10 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.84 Total: -20.01 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.02 -7.91 -39.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167818872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.112 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds