Wall clock time and date at job start Wed Apr 1 2020 02:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35610 * 117.00086 * 2 1 4 4 C 1.39160 * 120.50535 * 0.02562 * 3 2 1 5 5 C 1.38303 * 118.62996 * 179.72033 * 4 3 2 6 6 C 1.39940 * 119.59522 * 0.48381 * 5 4 3 7 7 N 1.38907 * 119.49781 * 179.78408 * 6 5 4 8 8 C 1.46498 * 119.99684 * 359.72871 * 7 6 5 9 9 C 1.50712 * 109.46870 * 179.97438 * 8 7 6 10 10 C 1.39134 * 120.80948 * 269.71556 * 9 8 7 11 11 O 1.35919 * 120.47423 * 0.25317 * 10 9 8 12 12 C 1.38712 * 119.05333 * 180.27062 * 10 9 8 13 13 C 1.50699 * 119.65685 * 179.97438 * 12 10 9 14 14 N 1.31841 * 120.67995 * 0.02562 * 12 10 9 15 15 C 1.31841 * 121.78108 * 359.97438 * 14 12 10 16 16 C 1.38251 * 120.88950 * 0.02562 * 15 14 12 17 17 C 1.50697 * 120.39162 * 180.02562 * 16 15 14 18 18 O 1.42899 * 109.47026 * 359.97438 * 17 16 15 19 19 N 1.31869 * 121.00939 * 359.50483 * 6 5 4 20 20 C 1.33824 * 121.46845 * 0.25709 * 19 6 5 21 21 C 1.40918 * 119.84730 * 180.02562 * 20 19 6 22 22 H 1.08004 * 120.00021 * 173.60066 * 21 20 19 23 23 C 1.40028 * 120.00041 * 353.59574 * 21 20 19 24 24 N 1.30777 * 119.99833 * 6.27791 * 23 21 20 25 25 Si 1.86798 * 120.00135 * 186.28204 * 23 21 20 26 26 H 1.48499 * 109.47185 * 94.98284 * 25 23 21 27 27 H 1.48497 * 109.46949 * 214.98516 * 25 23 21 28 28 H 1.48497 * 109.46872 * 334.98533 * 25 23 21 29 29 H 1.09002 * 109.47390 * 300.00091 * 1 2 3 30 30 H 1.09000 * 109.47091 * 59.99634 * 1 2 3 31 31 H 1.08998 * 109.47540 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.68155 * 359.97438 * 4 3 2 33 33 H 1.08004 * 120.20630 * 180.26780 * 5 4 3 34 34 H 0.97005 * 119.99821 * 179.72462 * 7 6 5 35 35 H 1.08993 * 109.47496 * 59.99942 * 8 7 6 36 36 H 1.08999 * 109.46788 * 299.99188 * 8 7 6 37 37 H 0.96702 * 113.99683 * 89.99808 * 11 10 9 38 38 H 1.09003 * 109.46896 * 270.02133 * 13 12 10 39 39 H 1.09001 * 109.47490 * 30.02853 * 13 12 10 40 40 H 1.09004 * 109.46953 * 150.02391 * 13 12 10 41 41 H 1.08008 * 119.55570 * 180.02562 * 15 14 12 42 42 H 1.08995 * 109.47394 * 119.97790 * 17 16 15 43 43 H 1.09003 * 109.47443 * 239.97852 * 17 16 15 44 44 H 0.96701 * 114.00178 * 180.02562 * 18 17 16 45 45 H 0.97000 * 120.00279 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2971 2.3820 0.0005 5 6 1.9650 3.5931 0.0064 6 6 3.3643 3.6107 0.0014 7 7 4.0330 4.8282 0.0028 8 6 3.2735 6.0810 0.0035 9 6 4.2282 7.2471 0.0056 10 6 4.6740 7.8010 1.2016 11 8 4.2586 7.2949 2.3927 12 6 5.5480 8.8774 1.1610 13 6 6.0389 9.4882 2.4482 14 7 5.9528 9.3721 0.0080 15 6 5.5495 8.8707 -1.1427 16 6 4.6785 7.7978 -1.1831 17 6 4.2252 7.2332 -2.5047 18 8 4.8277 7.9711 -3.5698 19 7 4.0578 2.4891 0.0009 20 6 3.4544 1.2946 0.0000 21 6 4.2291 0.1175 0.0000 22 1 3.7495 -0.8446 0.1035 23 6 5.6208 0.1953 -0.1343 24 7 6.2133 1.3611 -0.1363 25 14 6.6308 -1.3662 -0.3108 26 1 6.8624 -1.6458 -1.7507 27 1 7.9359 -1.1917 0.3758 28 1 5.8969 -2.5023 0.3022 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2176 2.3479 0.0005 33 1 1.4101 4.5197 0.0114 34 1 5.0028 4.8489 0.0034 35 1 2.6453 6.1246 0.8931 36 1 2.6464 6.1261 -0.8869 37 1 4.8241 6.5914 2.7397 38 1 5.3592 10.2829 2.7557 39 1 6.0765 8.7222 3.2228 40 1 7.0363 9.9012 2.2972 41 1 5.9043 9.3039 -2.0663 42 1 4.5225 6.1868 -2.5740 43 1 3.1403 7.3083 -2.5791 44 1 4.5797 7.6622 -4.4519 45 1 7.1774 1.4150 -0.2290 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167818872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:57 Heat of formation + Delta-G solvation = -75.074429 kcal Electronic energy + Delta-G solvation = -29978.111543 eV Core-core repulsion = 25767.487676 eV Total energy + Delta-G solvation = -4210.623868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.93594 -40.59921 -38.70521 -38.57252 -37.70439 -36.74102 -35.34548 -33.97799 -32.34222 -32.16440 -30.59362 -29.62633 -28.05420 -27.36231 -26.54950 -26.15686 -23.74790 -23.22299 -22.31016 -21.68555 -19.34114 -19.16791 -19.09126 -18.46162 -18.16095 -17.33063 -16.96549 -16.94118 -16.47102 -16.32218 -16.21406 -15.90012 -15.54750 -15.24067 -15.04604 -14.84636 -14.69895 -14.42894 -14.10982 -13.86916 -13.61483 -13.37875 -13.25755 -13.24761 -13.07112 -12.92127 -12.89055 -12.78928 -12.47776 -12.28021 -12.06684 -11.97444 -11.58842 -11.43414 -11.25308 -10.52830 -10.44506 -10.15069 -9.89973 -9.64473 -9.56935 -8.26944 -8.09647 -6.31411 -0.10032 -0.08580 0.99509 1.28060 1.42573 1.55801 1.56965 2.26520 2.36679 2.73169 2.88435 2.91143 3.06593 3.23925 3.32430 3.44802 3.65045 3.92394 3.97591 4.21761 4.26438 4.28388 4.37489 4.43506 4.46287 4.49794 4.53152 4.61195 4.68905 4.71156 4.74341 4.76978 4.90482 4.93450 4.99144 5.08059 5.18694 5.32888 5.50779 5.52258 5.70494 5.85606 6.27067 6.41227 6.54283 6.69048 6.74842 6.83254 6.91504 6.95708 7.33607 8.28788 8.48430 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010516 B = 0.003129 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.994689 B = 8945.984666 C = 9670.578513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.338 6.338 3 C -0.097 4.097 4 C -0.112 4.112 5 C -0.340 4.340 6 C 0.379 3.621 7 N -0.723 5.723 8 C 0.190 3.810 9 C -0.084 4.084 10 C 0.074 3.926 11 O -0.488 6.488 12 C 0.089 3.911 13 C -0.095 4.095 14 N -0.481 5.481 15 C 0.105 3.895 16 C -0.118 4.118 17 C 0.127 3.873 18 O -0.578 6.578 19 N -0.540 5.540 20 C 0.255 3.745 21 C -0.451 4.451 22 H 0.082 0.918 23 C 0.029 3.971 24 N -0.747 5.747 25 Si 0.981 3.019 26 H -0.265 1.265 27 H -0.267 1.267 28 H -0.259 1.259 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.391 0.609 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.406 0.594 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.176 0.824 42 H 0.058 0.942 43 H 0.079 0.921 44 H 0.405 0.595 45 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 11.618 -1.033 11.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.252 6.252 3 C -0.145 4.145 4 C -0.137 4.137 5 C -0.366 4.366 6 C 0.141 3.859 7 N -0.360 5.360 8 C 0.066 3.934 9 C -0.092 4.092 10 C 0.027 3.973 11 O -0.299 6.299 12 C -0.049 4.049 13 C -0.152 4.152 14 N -0.192 5.192 15 C -0.052 4.052 16 C -0.121 4.121 17 C 0.049 3.951 18 O -0.388 6.388 19 N -0.263 5.263 20 C 0.126 3.874 21 C -0.484 4.484 22 H 0.100 0.900 23 C -0.193 4.193 24 N -0.370 5.370 25 Si 0.802 3.198 26 H -0.190 1.190 27 H -0.191 1.191 28 H -0.183 1.183 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.128 0.872 32 H 0.149 0.851 33 H 0.137 0.863 34 H 0.225 0.775 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.265 0.735 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.193 0.807 42 H 0.076 0.924 43 H 0.096 0.904 44 H 0.257 0.743 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.360 13.114 -0.567 13.197 hybrid contribution -0.952 -1.855 -0.520 2.149 sum -2.312 11.259 -1.087 11.545 Atomic orbital electron populations 1.23020 0.79131 1.03965 1.00578 1.85859 1.21017 1.27350 1.90988 1.20103 0.93252 0.84572 1.16529 1.21034 0.98886 0.91635 1.02095 1.20687 0.92587 0.97436 1.25915 1.18757 0.88489 0.86945 0.91704 1.43978 1.07481 1.00694 1.83845 1.19843 0.91896 0.79300 1.02326 1.20461 0.98934 0.97353 0.92497 1.19109 0.96565 0.95874 0.85786 1.84743 1.54962 1.57280 1.32899 1.22138 0.93328 0.93794 0.95624 1.20669 1.02216 1.01512 0.90784 1.67630 1.23945 1.29462 0.98166 1.22774 0.93450 0.92705 0.96279 1.20715 0.98873 0.97695 0.94805 1.20710 0.97006 0.93846 0.83561 1.86304 1.73543 1.60486 1.18461 1.68296 1.36081 0.95672 1.26270 1.18148 0.86668 0.91541 0.90995 1.19716 0.92277 0.93148 1.43219 0.89965 1.26847 0.99017 1.00493 0.92907 1.70225 1.10619 1.26605 1.29552 0.85217 0.77441 0.77962 0.79227 1.19010 1.19106 1.18308 0.93448 0.93387 0.87190 0.85137 0.86312 0.77497 0.91222 0.90970 0.73459 0.89477 0.89341 0.90042 0.80740 0.92407 0.90367 0.74329 0.91306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 9.83 113.37 1.11 2.03 16 2 O -0.34 -15.57 9.62 -89.21 -0.86 -16.43 16 3 C -0.10 -4.87 6.74 23.23 0.16 -4.71 16 4 C -0.11 -4.90 9.12 22.51 0.21 -4.69 16 5 C -0.34 -14.54 9.33 22.70 0.21 -14.33 16 6 C 0.38 17.47 7.65 133.45 1.02 18.49 16 7 N -0.72 -26.76 5.72 -348.57 -1.99 -28.76 16 8 C 0.19 5.57 4.46 85.64 0.38 5.95 16 9 C -0.08 -2.27 5.30 -19.58 -0.10 -2.37 16 10 C 0.07 1.94 6.68 22.60 0.15 2.09 16 11 O -0.49 -11.69 11.73 -92.64 -1.09 -12.78 16 12 C 0.09 2.26 6.80 42.67 0.29 2.55 16 13 C -0.09 -1.77 9.96 71.24 0.71 -1.06 16 14 N -0.48 -13.17 10.27 -183.50 -1.88 -15.06 16 15 C 0.10 2.75 10.54 84.69 0.89 3.64 16 16 C -0.12 -3.06 5.89 -19.79 -0.12 -3.17 16 17 C 0.13 2.83 6.25 71.23 0.45 3.27 16 18 O -0.58 -11.12 12.17 -148.98 -1.81 -12.94 16 19 N -0.54 -29.20 7.91 -186.17 -1.47 -30.67 16 20 C 0.26 14.32 6.55 40.23 0.26 14.58 16 21 C -0.45 -25.19 8.92 23.36 0.21 -24.98 16 22 H 0.08 4.53 7.33 -2.91 -0.02 4.51 16 23 C 0.03 1.50 5.49 85.28 0.47 1.97 16 24 N -0.75 -39.52 11.48 21.84 0.25 -39.27 16 25 Si 0.98 38.83 29.56 68.60 2.03 40.86 16 26 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 27 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 28 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 29 H 0.05 1.41 7.69 -2.39 -0.02 1.39 16 30 H 0.05 1.42 7.69 -2.39 -0.02 1.40 16 31 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.13 4.76 6.43 -2.91 -0.02 4.74 16 33 H 0.12 4.35 6.67 -2.91 -0.02 4.33 16 34 H 0.39 15.14 8.58 -92.70 -0.80 14.34 16 35 H 0.07 2.10 7.38 -2.39 -0.02 2.08 16 36 H 0.07 1.98 6.58 -2.39 -0.02 1.96 16 37 H 0.41 7.64 9.06 -74.06 -0.67 6.97 16 38 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.09 1.41 7.52 -2.39 -0.02 1.39 16 40 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 41 H 0.18 4.18 7.01 -2.91 -0.02 4.16 16 42 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 43 H 0.08 1.51 7.57 -2.39 -0.02 1.49 16 44 H 0.41 4.12 9.12 -74.06 -0.68 3.45 16 45 H 0.28 13.23 8.30 -92.71 -0.77 12.46 16 Total: -1.00 -70.54 378.79 -1.58 -72.12 By element: Atomic # 1 Polarization: 44.72 SS G_CDS: -1.05 Total: 43.67 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 6.30 Total: -0.74 kcal Atomic # 7 Polarization: -108.66 SS G_CDS: -5.10 Total: -113.76 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -3.76 Total: -42.15 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Total: -70.54 -1.58 -72.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167818872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.950 kcal (2) G-P(sol) polarization free energy of solvation -70.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds