Wall clock time and date at job start Wed Apr 1 2020 04:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35315 * 126.12806 * 2 1 4 4 C 1.39871 * 107.92548 * 180.02562 * 3 2 1 5 5 C 1.50696 * 125.89986 * 180.02562 * 4 3 2 6 6 F 1.39895 * 109.47177 * 90.00165 * 5 4 3 7 7 F 1.39901 * 109.46609 * 209.99760 * 5 4 3 8 8 F 1.39896 * 109.47054 * 329.99540 * 5 4 3 9 9 N 1.30839 * 108.19740 * 359.73844 * 4 3 2 10 10 N 1.34946 * 126.13058 * 180.02562 * 2 1 3 11 11 C 1.46508 * 126.03423 * 359.96267 * 10 2 1 12 12 C 1.50702 * 109.47195 * 89.99441 * 11 10 2 13 13 O 1.21275 * 119.99764 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99912 * 179.97438 * 12 11 10 15 15 C 1.46502 * 119.99964 * 180.02562 * 14 12 11 16 16 H 1.09000 * 109.35444 * 324.82813 * 15 14 12 17 17 C 1.52956 * 109.41045 * 84.64709 * 15 14 12 18 18 C 1.53232 * 109.40174 * 183.70128 * 17 15 14 19 19 C 1.51337 * 108.68817 * 305.48622 * 18 17 15 20 20 C 1.37872 * 120.88782 * 231.22378 * 19 18 17 21 21 N 1.31514 * 120.00025 * 179.78258 * 20 19 18 22 22 Si 1.86802 * 120.00569 * 359.77663 * 20 19 18 23 23 H 1.48503 * 109.47002 * 90.00053 * 22 20 19 24 24 H 1.48496 * 109.47711 * 210.00401 * 22 20 19 25 25 H 1.48503 * 109.46897 * 330.00930 * 22 20 19 26 26 C 1.51266 * 118.25863 * 51.00749 * 19 18 17 27 27 C 1.52955 * 109.41043 * 205.00276 * 15 14 12 28 28 H 1.09001 * 109.47667 * 269.97742 * 1 2 3 29 29 H 1.09002 * 109.47349 * 29.97507 * 1 2 3 30 30 H 1.09001 * 109.47050 * 149.97270 * 1 2 3 31 31 H 1.08009 * 126.03848 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.46760 * 329.99970 * 11 10 2 33 33 H 1.08996 * 109.47107 * 210.00042 * 11 10 2 34 34 H 0.97003 * 119.99902 * 0.02562 * 14 12 11 35 35 H 1.09000 * 109.48686 * 303.68625 * 17 15 14 36 36 H 1.09000 * 109.47922 * 63.71416 * 17 15 14 37 37 H 1.09005 * 109.62412 * 65.09153 * 18 17 15 38 38 H 1.09004 * 109.62449 * 185.46783 * 18 17 15 39 39 H 0.96996 * 120.00661 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.62649 * 189.17517 * 26 19 18 41 41 H 1.09001 * 109.62544 * 68.79863 * 26 19 18 42 42 H 1.09001 * 109.48702 * 56.31644 * 27 15 14 43 43 H 1.09003 * 109.49443 * 296.27832 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6560 -0.0006 5 6 4.8542 1.5396 -0.0003 6 9 5.2323 1.8121 1.3188 7 9 5.9015 0.8880 -0.6604 8 9 4.5621 2.7387 -0.6589 9 7 3.6334 -0.6524 0.0047 10 7 2.3026 -1.0899 -0.0005 11 6 1.8539 -2.4846 -0.0003 12 6 1.6992 -2.9627 -1.4211 13 8 1.9404 -2.2125 -2.3430 14 7 1.2937 -4.2242 -1.6672 15 6 1.1438 -4.6891 -3.0484 16 1 0.7852 -3.8680 -3.6691 17 6 2.4980 -5.1691 -3.5730 18 6 2.3608 -5.5686 -5.0459 19 6 1.2473 -6.5859 -5.1707 20 6 1.4491 -7.7787 -5.8321 21 7 0.4704 -8.6521 -5.9265 22 14 3.1126 -8.1542 -6.5945 23 1 3.9683 -8.8479 -5.5986 24 1 2.9275 -9.0271 -7.7815 25 1 3.7646 -6.8861 -7.0094 26 6 -0.0919 -6.2621 -4.5463 27 6 0.1343 -5.8374 -3.0915 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5143 31 1 1.9740 2.1211 0.0004 32 1 0.8957 -2.5578 0.5140 33 1 2.5901 -3.1031 0.5131 34 1 1.1011 -4.8243 -0.9298 35 1 3.2291 -4.3660 -3.4807 36 1 2.8285 -6.0301 -2.9919 37 1 2.1180 -4.6894 -5.6426 38 1 3.2976 -6.0017 -5.3966 39 1 0.6122 -9.4911 -6.3921 40 1 -0.7321 -7.1438 -4.5751 41 1 -0.5649 -5.4482 -5.0959 42 1 -0.8100 -5.5079 -2.6579 43 1 0.5204 -6.6828 -2.5219 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176951218.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:31 Heat of formation + Delta-G solvation = -122.478763 kcal Electronic energy + Delta-G solvation = -30268.111177 eV Core-core repulsion = 25513.574963 eV Total energy + Delta-G solvation = -4754.536214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.32303 -47.86602 -47.80189 -41.86061 -39.66595 -36.93096 -34.18612 -33.89530 -32.53606 -31.69187 -29.78996 -29.17061 -27.52326 -27.28771 -25.64295 -22.53913 -21.63839 -21.39898 -20.91870 -20.12286 -19.57576 -18.71732 -18.50339 -17.69715 -17.51709 -16.89219 -16.07144 -15.66713 -15.29994 -15.09726 -14.70000 -14.63963 -14.48660 -14.24845 -14.15568 -13.95805 -13.94264 -13.74934 -13.69589 -13.31241 -13.13440 -12.93662 -12.83157 -12.60368 -12.31121 -12.24839 -12.15240 -11.77511 -11.18943 -11.13090 -10.89984 -10.80693 -10.42607 -10.17981 -10.06964 -9.75879 -9.58910 -9.13987 -9.02200 -8.90113 -8.53370 -8.47601 -6.17422 -4.08465 1.22996 1.63619 2.05063 2.52201 2.54425 3.21194 3.26400 3.32740 3.35805 3.44951 3.73066 4.19514 4.24581 4.29787 4.33617 4.58732 4.64085 4.77325 5.05974 5.10511 5.10930 5.19504 5.45267 5.57876 5.62129 5.75164 5.90194 6.05864 6.29297 6.37065 6.46614 6.58031 6.61577 6.78560 6.85008 7.00968 7.05421 7.11433 7.35635 7.55374 7.55926 7.63475 7.75972 8.23120 8.30176 8.88492 9.47919 10.91995 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.002405 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.237603 B =11640.275339 C =12694.787226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.106 3.894 3 C -0.234 4.234 4 C -0.018 4.018 5 C 0.558 3.442 6 F -0.171 7.171 7 F -0.167 7.167 8 F -0.166 7.166 9 N -0.227 5.227 10 N -0.332 5.332 11 C 0.106 3.894 12 C 0.490 3.510 13 O -0.521 6.521 14 N -0.717 5.717 15 C 0.155 3.845 16 H 0.079 0.921 17 C -0.114 4.114 18 C -0.013 4.013 19 C -0.491 4.491 20 C 0.077 3.923 21 N -0.890 5.890 22 Si 0.888 3.112 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.266 1.266 26 C 0.013 3.987 27 C -0.113 4.113 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.161 0.839 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.396 0.604 35 H 0.037 0.963 36 H 0.052 0.948 37 H 0.019 0.981 38 H 0.031 0.969 39 H 0.265 0.735 40 H 0.062 0.938 41 H 0.006 0.994 42 H 0.036 0.964 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.081 16.406 17.410 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.021 4.021 3 C -0.263 4.263 4 C -0.184 4.184 5 C 0.502 3.498 6 F -0.152 7.152 7 F -0.148 7.148 8 F -0.147 7.147 9 N -0.050 5.050 10 N -0.115 5.115 11 C -0.019 4.019 12 C 0.272 3.728 13 O -0.397 6.397 14 N -0.368 5.368 15 C 0.053 3.947 16 H 0.097 0.903 17 C -0.153 4.153 18 C -0.051 4.051 19 C -0.510 4.510 20 C -0.126 4.126 21 N -0.527 5.527 22 Si 0.716 3.284 23 H -0.204 1.204 24 H -0.216 1.216 25 H -0.191 1.191 26 C -0.025 4.025 27 C -0.152 4.152 28 H 0.104 0.896 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.178 0.822 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.230 0.770 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.037 0.963 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.024 0.976 42 H 0.055 0.945 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.896 15.594 16.652 22.832 hybrid contribution 0.605 0.078 -0.075 0.614 sum 1.501 15.672 16.578 22.862 Atomic orbital electron populations 1.20533 0.86279 1.04918 1.03600 1.21137 0.95230 0.86170 0.99527 1.20861 0.89521 0.99991 1.15933 1.21904 0.94363 0.93152 1.09030 1.16854 0.81134 0.77860 0.73986 1.93230 1.92030 1.94081 1.35878 1.93252 1.59629 1.81009 1.80897 1.93218 1.93368 1.47073 1.81057 1.77358 0.97354 1.10189 1.20088 1.47987 1.03031 1.05426 1.55053 1.21731 1.03595 0.79116 0.97478 1.20536 0.78539 0.83185 0.90491 1.90794 1.48720 1.54813 1.45330 1.46385 1.67631 1.11976 1.10806 1.21130 0.97314 0.97136 0.79113 0.90301 1.21913 0.94780 0.98640 0.99995 1.19717 0.96886 0.97143 0.91357 1.20035 0.95908 1.00709 1.34309 1.24827 0.96792 0.95492 0.95452 1.69821 1.31887 1.08734 1.42269 0.86660 0.84432 0.78214 0.79105 1.20391 1.21562 1.19142 1.19332 0.96940 0.97424 0.88784 1.21938 0.95223 0.95734 1.02283 0.89577 0.88888 0.90566 0.82174 0.85462 0.85287 0.77030 0.94473 0.92924 0.96294 0.95009 0.92514 0.91991 0.97568 0.94520 0.92583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 9.90 36.00 0.36 -0.27 16 2 C 0.11 1.11 6.93 -82.27 -0.57 0.54 16 3 C -0.23 -2.57 10.34 -40.01 -0.41 -2.99 16 4 C -0.02 -0.23 6.56 -82.41 -0.54 -0.77 16 5 C 0.56 6.74 3.55 36.00 0.13 6.87 16 6 F -0.17 -1.94 17.30 2.25 0.04 -1.90 16 7 F -0.17 -2.26 17.25 2.25 0.04 -2.22 16 8 F -0.17 -1.87 17.04 2.25 0.04 -1.83 16 9 N -0.23 -3.31 12.51 33.67 0.42 -2.89 16 10 N -0.33 -4.04 3.10 -58.31 -0.18 -4.22 16 11 C 0.11 0.99 6.55 -5.19 -0.03 0.96 16 12 C 0.49 6.82 7.86 -10.99 -0.09 6.73 16 13 O -0.52 -9.95 16.09 5.56 0.09 -9.86 16 14 N -0.72 -9.63 5.07 -53.85 -0.27 -9.90 16 15 C 0.16 2.82 2.35 -67.98 -0.16 2.66 16 16 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 17 C -0.11 -2.33 5.51 -26.63 -0.15 -2.48 16 18 C -0.01 -0.30 5.58 -27.45 -0.15 -0.45 16 19 C -0.49 -12.56 5.53 -98.89 -0.55 -13.11 16 20 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 21 N -0.89 -24.87 12.73 55.43 0.71 -24.16 16 22 Si 0.89 20.94 27.27 -169.99 -4.64 16.31 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.20 6.47 56.52 0.37 -5.84 16 26 C 0.01 0.31 5.96 -27.48 -0.16 0.14 16 27 C -0.11 -2.13 5.41 -26.63 -0.14 -2.27 16 28 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.53 7.72 -51.93 -0.40 0.13 16 31 H 0.16 1.33 8.06 -52.48 -0.42 0.90 16 32 H 0.13 0.64 7.66 -51.93 -0.40 0.24 16 33 H 0.13 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.40 3.87 8.60 -40.82 -0.35 3.52 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.03 0.74 4.81 -51.93 -0.25 0.49 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.06 1.59 7.07 -51.93 -0.37 1.22 16 41 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -33.07 369.61 -6.32 -39.39 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.56 Total: -1.81 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -2.57 Total: -2.47 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.67 Total: -41.18 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.12 Total: -5.95 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.64 Total: 16.31 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.07 -6.32 -39.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176951218.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.090 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds