Wall clock time and date at job start Wed Apr 1 2020 04:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35315 * 126.12806 * 2 1 4 4 C 1.39871 * 107.92548 * 180.02562 * 3 2 1 5 5 C 1.50696 * 125.89986 * 180.02562 * 4 3 2 6 6 F 1.39895 * 109.47177 * 90.00165 * 5 4 3 7 7 F 1.39901 * 109.46609 * 209.99760 * 5 4 3 8 8 F 1.39896 * 109.47054 * 329.99540 * 5 4 3 9 9 N 1.30839 * 108.19740 * 359.73844 * 4 3 2 10 10 N 1.34946 * 126.13058 * 180.02562 * 2 1 3 11 11 C 1.46508 * 126.03423 * 359.96267 * 10 2 1 12 12 C 1.50702 * 109.47195 * 89.99441 * 11 10 2 13 13 O 1.21275 * 119.99764 * 0.02562 * 12 11 10 14 14 N 1.34775 * 119.99912 * 179.97438 * 12 11 10 15 15 C 1.46502 * 119.99964 * 180.02562 * 14 12 11 16 16 H 1.09000 * 109.35444 * 324.82813 * 15 14 12 17 17 C 1.52956 * 109.41045 * 84.64709 * 15 14 12 18 18 C 1.53232 * 109.40174 * 183.70128 * 17 15 14 19 19 C 1.51337 * 108.68817 * 305.48622 * 18 17 15 20 20 C 1.37872 * 120.88782 * 231.22378 * 19 18 17 21 21 N 1.31514 * 120.00025 * 179.78258 * 20 19 18 22 22 Si 1.86802 * 120.00569 * 359.77663 * 20 19 18 23 23 H 1.48503 * 109.47002 * 90.00053 * 22 20 19 24 24 H 1.48496 * 109.47711 * 210.00401 * 22 20 19 25 25 H 1.48503 * 109.46897 * 330.00930 * 22 20 19 26 26 C 1.51266 * 118.25863 * 51.00749 * 19 18 17 27 27 C 1.52955 * 109.41043 * 205.00276 * 15 14 12 28 28 H 1.09001 * 109.47667 * 269.97742 * 1 2 3 29 29 H 1.09002 * 109.47349 * 29.97507 * 1 2 3 30 30 H 1.09001 * 109.47050 * 149.97270 * 1 2 3 31 31 H 1.08009 * 126.03848 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.46760 * 329.99970 * 11 10 2 33 33 H 1.08996 * 109.47107 * 210.00042 * 11 10 2 34 34 H 0.97003 * 119.99902 * 0.02562 * 14 12 11 35 35 H 1.09000 * 109.48686 * 303.68625 * 17 15 14 36 36 H 1.09000 * 109.47922 * 63.71416 * 17 15 14 37 37 H 1.09005 * 109.62412 * 65.09153 * 18 17 15 38 38 H 1.09004 * 109.62449 * 185.46783 * 18 17 15 39 39 H 0.96996 * 120.00661 * 179.97438 * 21 20 19 40 40 H 1.09002 * 109.62649 * 189.17517 * 26 19 18 41 41 H 1.09001 * 109.62544 * 68.79863 * 26 19 18 42 42 H 1.09001 * 109.48702 * 56.31644 * 27 15 14 43 43 H 1.09003 * 109.49443 * 296.27832 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6560 -0.0006 5 6 4.8542 1.5396 -0.0003 6 9 5.2323 1.8121 1.3188 7 9 5.9015 0.8880 -0.6604 8 9 4.5621 2.7387 -0.6589 9 7 3.6334 -0.6524 0.0047 10 7 2.3026 -1.0899 -0.0005 11 6 1.8539 -2.4846 -0.0003 12 6 1.6992 -2.9627 -1.4211 13 8 1.9404 -2.2125 -2.3430 14 7 1.2937 -4.2242 -1.6672 15 6 1.1438 -4.6891 -3.0484 16 1 0.7852 -3.8680 -3.6691 17 6 2.4980 -5.1691 -3.5730 18 6 2.3608 -5.5686 -5.0459 19 6 1.2473 -6.5859 -5.1707 20 6 1.4491 -7.7787 -5.8321 21 7 0.4704 -8.6521 -5.9265 22 14 3.1126 -8.1542 -6.5945 23 1 3.9683 -8.8479 -5.5986 24 1 2.9275 -9.0271 -7.7815 25 1 3.7646 -6.8861 -7.0094 26 6 -0.0919 -6.2621 -4.5463 27 6 0.1343 -5.8374 -3.0915 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8897 -0.5143 31 1 1.9740 2.1211 0.0004 32 1 0.8957 -2.5578 0.5140 33 1 2.5901 -3.1031 0.5131 34 1 1.1011 -4.8243 -0.9298 35 1 3.2291 -4.3660 -3.4807 36 1 2.8285 -6.0301 -2.9919 37 1 2.1180 -4.6894 -5.6426 38 1 3.2976 -6.0017 -5.3966 39 1 0.6122 -9.4911 -6.3921 40 1 -0.7321 -7.1438 -4.5751 41 1 -0.5649 -5.4482 -5.0959 42 1 -0.8100 -5.5079 -2.6579 43 1 0.5204 -6.6828 -2.5219 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176951218.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:10:30 Heat of formation + Delta-G solvation = -144.163708 kcal Electronic energy + Delta-G solvation = -30269.051507 eV Core-core repulsion = 25513.574963 eV Total energy + Delta-G solvation = -4755.476544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -51.26758 -48.79163 -48.77177 -42.69512 -40.87958 -38.50816 -35.45938 -35.05900 -33.56066 -33.12580 -31.52477 -30.26724 -28.80434 -28.16983 -26.65339 -24.15999 -23.36511 -22.32227 -22.01256 -21.37460 -20.95440 -19.65718 -19.44067 -18.69537 -18.54065 -17.94096 -17.72750 -16.79214 -16.45709 -16.30008 -16.13057 -15.62855 -15.60372 -15.19851 -15.12024 -15.04917 -14.91601 -14.89441 -14.70465 -14.58993 -14.40883 -14.20235 -13.95640 -13.69930 -13.59449 -13.57520 -13.22832 -13.00911 -12.81599 -12.72061 -12.58101 -12.03159 -11.97301 -11.85407 -11.57669 -11.40931 -10.96388 -10.75345 -10.57817 -10.47902 -9.97945 -9.77816 -8.20655 -6.14267 0.35295 0.82903 1.23886 1.34232 1.39591 1.47148 1.47801 1.65283 2.18828 2.37912 2.55244 2.84335 3.07775 3.26795 3.51719 3.62010 3.66926 4.01868 4.05634 4.14376 4.18592 4.33005 4.45111 4.45687 4.67496 4.73904 4.81171 4.93064 4.93704 5.03845 5.04289 5.07670 5.11436 5.18702 5.21856 5.50885 5.54776 5.63370 5.73323 5.76905 5.81234 6.20019 6.32180 6.53391 6.91616 7.19698 7.44263 8.89675 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.017771 B = 0.002405 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.237603 B =11640.275339 C =12694.787226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.108 3.892 3 C -0.247 4.247 4 C -0.032 4.032 5 C 0.561 3.439 6 F -0.167 7.167 7 F -0.179 7.179 8 F -0.162 7.162 9 N -0.273 5.273 10 N -0.339 5.339 11 C 0.110 3.890 12 C 0.491 3.509 13 O -0.577 6.577 14 N -0.703 5.703 15 C 0.169 3.831 16 H 0.054 0.946 17 C -0.107 4.107 18 C -0.016 4.016 19 C -0.500 4.500 20 C 0.029 3.971 21 N -0.925 5.925 22 Si 0.934 3.066 23 H -0.270 1.270 24 H -0.290 1.290 25 H -0.265 1.265 26 C 0.007 3.993 27 C -0.098 4.098 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.182 0.818 32 H 0.180 0.820 33 H 0.152 0.848 34 H 0.419 0.581 35 H 0.032 0.968 36 H 0.059 0.941 37 H 0.007 0.993 38 H 0.028 0.972 39 H 0.264 0.736 40 H 0.036 0.964 41 H -0.004 1.004 42 H 0.067 0.933 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.596 17.125 19.872 26.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.019 4.019 3 C -0.275 4.275 4 C -0.198 4.198 5 C 0.505 3.495 6 F -0.149 7.149 7 F -0.160 7.160 8 F -0.143 7.143 9 N -0.096 5.096 10 N -0.123 5.123 11 C -0.014 4.014 12 C 0.276 3.724 13 O -0.456 6.456 14 N -0.355 5.355 15 C 0.065 3.935 16 H 0.073 0.927 17 C -0.146 4.146 18 C -0.054 4.054 19 C -0.519 4.519 20 C -0.170 4.170 21 N -0.565 5.565 22 Si 0.761 3.239 23 H -0.196 1.196 24 H -0.217 1.217 25 H -0.189 1.189 26 C -0.031 4.031 27 C -0.137 4.137 28 H 0.136 0.864 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.200 0.800 32 H 0.198 0.802 33 H 0.170 0.830 34 H 0.257 0.743 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.026 0.974 38 H 0.047 0.953 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.014 0.986 42 H 0.086 0.914 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.226 16.305 19.164 25.163 hybrid contribution 0.757 -0.075 -0.863 1.150 sum 0.982 16.230 18.301 24.481 Atomic orbital electron populations 1.20717 0.83287 1.05381 1.05714 1.21842 0.96948 0.85508 0.97577 1.21259 0.88746 1.01486 1.16035 1.22130 0.95318 0.93161 1.09226 1.16829 0.80811 0.77900 0.74001 1.93231 1.92004 1.94052 1.35570 1.93221 1.60248 1.81342 1.81213 1.93220 1.93300 1.46757 1.81014 1.77258 0.99331 1.11001 1.22046 1.48231 1.02479 1.06634 1.54925 1.22020 1.06904 0.78260 0.94198 1.21314 0.76711 0.82333 0.92019 1.90782 1.50972 1.56243 1.47617 1.45993 1.67417 1.12584 1.09467 1.20605 0.95530 0.95946 0.81442 0.92737 1.21784 0.96190 0.98693 0.97951 1.19720 0.96004 0.96101 0.93570 1.20575 0.97168 1.00787 1.33361 1.25479 0.99344 0.95901 0.96258 1.69927 1.33447 1.09264 1.43822 0.85908 0.81507 0.77977 0.78533 1.19556 1.21669 1.18938 1.19308 0.95629 0.96049 0.92105 1.21681 0.97009 0.96095 0.98867 0.86447 0.87901 0.90606 0.80039 0.80238 0.83049 0.74340 0.94940 0.92212 0.97439 0.95326 0.92651 0.94550 0.98556 0.91422 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 9.90 71.23 0.71 -0.15 16 2 C 0.11 1.99 6.93 41.40 0.29 2.27 16 3 C -0.25 -5.00 10.34 21.99 0.23 -4.77 16 4 C -0.03 -0.83 6.56 43.10 0.28 -0.55 16 5 C 0.56 13.42 3.55 71.23 0.25 13.67 16 6 F -0.17 -3.72 17.30 44.97 0.78 -2.94 16 7 F -0.18 -4.91 17.25 44.97 0.78 -4.14 16 8 F -0.16 -3.56 17.04 44.97 0.77 -2.80 16 9 N -0.27 -7.72 12.51 -47.39 -0.59 -8.31 16 10 N -0.34 -7.45 3.10 -338.40 -1.05 -8.50 16 11 C 0.11 1.64 6.55 85.63 0.56 2.20 16 12 C 0.49 12.41 7.86 87.66 0.69 13.10 16 13 O -0.58 -21.51 16.09 -3.01 -0.05 -21.55 16 14 N -0.70 -16.71 5.07 -442.68 -2.25 -18.96 16 15 C 0.17 5.86 2.35 44.96 0.11 5.97 16 16 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 17 C -0.11 -4.27 5.51 30.66 0.17 -4.10 16 18 C -0.02 -0.74 5.58 30.13 0.17 -0.57 16 19 C -0.50 -25.74 5.53 -16.15 -0.09 -25.83 16 20 C 0.03 1.57 5.46 84.65 0.46 2.03 16 21 N -0.92 -52.62 12.73 21.45 0.27 -52.35 16 22 Si 0.93 43.17 27.27 68.60 1.87 45.04 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 25 H -0.26 -12.00 6.47 99.48 0.64 -11.36 16 26 C 0.01 0.33 5.96 30.11 0.18 0.51 16 27 C -0.10 -3.50 5.41 30.66 0.17 -3.33 16 28 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.75 7.72 -2.39 -0.02 0.73 16 31 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 32 H 0.18 0.77 7.66 -2.39 -0.02 0.75 16 33 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.42 6.35 8.60 -92.71 -0.80 5.55 16 35 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 38 H 0.03 1.33 4.81 -2.39 -0.01 1.32 16 39 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 40 H 0.04 1.89 7.07 -2.39 -0.02 1.87 16 41 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -75.22 369.61 4.90 -70.32 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 0.21 Total: 3.73 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: 4.16 Total: 0.47 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -3.62 Total: -88.13 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.05 Total: -21.55 kcal Atomic # 9 Polarization: -12.20 SS G_CDS: 2.32 Total: -9.88 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.87 Total: 45.04 kcal Total: -75.22 4.90 -70.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176951218.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.845 kcal (2) G-P(sol) polarization free energy of solvation -75.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds