Wall clock time and date at job start Wed Apr 1 2020 03:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99810 * 2 1 4 4 C 1.38752 * 120.05966 * 359.95652 * 3 2 1 5 5 C 1.38120 * 119.94924 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05366 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.11144 * 0.02562 * 6 5 4 8 8 C 1.38168 * 120.05607 * 359.97438 * 7 6 5 9 9 C 1.50705 * 120.02897 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47135 * 224.25416 * 9 8 7 11 11 C 1.53001 * 109.46977 * 344.25126 * 9 8 7 12 12 N 1.46497 * 109.46928 * 174.99719 * 11 9 8 13 13 C 1.34777 * 119.99974 * 179.97438 * 12 11 9 14 14 O 1.21497 * 119.99890 * 359.97438 * 13 12 11 15 15 C 1.48331 * 120.00163 * 180.02562 * 13 12 11 16 16 C 1.42268 * 126.94117 * 179.71084 * 15 13 12 17 17 C 1.35315 * 103.92328 * 179.91243 * 16 15 13 18 18 C 1.50701 * 126.66541 * 180.09088 * 17 16 15 19 19 O 1.34012 * 106.66707 * 0.34191 * 17 16 15 20 20 N 1.20907 * 111.84708 * 359.76719 * 19 17 16 21 21 N 1.46496 * 109.46813 * 104.24767 * 9 8 7 22 22 C 1.36942 * 120.00600 * 300.01026 * 21 9 8 23 23 H 1.07998 * 119.99618 * 4.93670 * 22 21 9 24 24 C 1.38810 * 120.00381 * 184.93936 * 22 21 9 25 25 N 1.31626 * 119.99552 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00030 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47190 * 60.00136 * 26 24 22 28 28 H 1.48507 * 109.47148 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47232 * 299.99952 * 26 24 22 30 30 H 1.09004 * 109.47065 * 60.00421 * 1 2 3 31 31 H 1.08994 * 109.46943 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47246 * 300.00150 * 1 2 3 33 33 H 1.08004 * 120.02603 * 0.04107 * 4 3 2 34 34 H 1.07994 * 119.97421 * 180.25280 * 5 4 3 35 35 H 1.07995 * 119.94492 * 179.97438 * 6 5 4 36 36 H 1.08007 * 119.97347 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47290 * 294.99987 * 11 9 8 38 38 H 1.09000 * 109.47019 * 54.99751 * 11 9 8 39 39 H 0.97002 * 120.00192 * 0.02562 * 12 11 9 40 40 H 1.07999 * 128.04070 * 0.02562 * 16 15 13 41 41 H 1.08999 * 109.47208 * 180.27630 * 18 17 16 42 42 H 1.08999 * 109.47330 * 300.28095 * 18 17 16 43 43 H 1.09001 * 109.47386 * 60.28069 * 18 17 16 44 44 H 0.97006 * 119.99728 * 120.00594 * 21 9 8 45 45 H 0.97001 * 119.99311 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9208 3.6048 -0.0014 6 6 3.3019 3.6758 -0.0005 7 6 4.0559 2.5172 0.0004 8 6 3.4311 1.2849 0.0009 9 6 4.2537 0.0221 0.0013 10 1 3.8353 -0.6844 -0.7155 11 6 5.6954 0.3525 -0.3905 12 7 6.5211 -0.8519 -0.2746 13 6 7.8348 -0.7995 -0.5715 14 8 8.3340 0.2466 -0.9356 15 6 8.6708 -2.0192 -0.4548 16 6 10.0612 -2.1327 -0.7338 17 6 10.3408 -3.4306 -0.4727 18 6 11.6824 -4.1052 -0.5994 19 8 9.1917 -4.0009 -0.0850 20 7 8.2767 -3.2106 -0.0793 21 7 4.2356 -0.5720 1.3403 22 6 4.7150 0.1357 2.4101 23 1 5.0325 1.1599 2.2814 24 6 4.7931 -0.4633 3.6599 25 7 4.4057 -1.7114 3.8167 26 14 5.4478 0.5020 5.1189 27 1 4.5942 1.6957 5.3460 28 1 5.4283 -0.3574 6.3299 29 1 6.8407 0.9351 4.8411 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.2128 2.3204 -0.0010 34 1 1.3339 4.5113 0.0020 35 1 3.7922 4.6381 -0.0014 36 1 5.1345 2.5753 0.0007 37 1 5.7190 0.7118 -1.4193 38 1 6.0843 1.1249 0.2731 39 1 6.1223 -1.6874 0.0150 40 1 10.7370 -1.3616 -1.0732 41 1 11.5886 -5.1555 -0.3232 42 1 12.0311 -4.0302 -1.6294 43 1 12.3981 -3.6180 0.0629 44 1 3.8838 -1.4668 1.4691 45 1 4.4599 -2.1298 4.6902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198515374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:44 Heat of formation + Delta-G solvation = 36.084058 kcal Electronic energy + Delta-G solvation = -30187.712991 eV Core-core repulsion = 25981.909317 eV Total energy + Delta-G solvation = -4205.803674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.96538 -39.92669 -39.09217 -37.20430 -35.82393 -34.04797 -33.65084 -33.04562 -31.92862 -29.90791 -29.50558 -27.92353 -27.64634 -26.75297 -24.92483 -23.75992 -22.67869 -22.34133 -21.46107 -19.88273 -19.64290 -17.77815 -17.72668 -17.50004 -17.15159 -16.56681 -15.80990 -15.56177 -15.25669 -15.10027 -14.98223 -14.44775 -14.18585 -13.99015 -13.78873 -13.76699 -13.48684 -13.45181 -13.09846 -12.87016 -12.71204 -12.48818 -12.26881 -11.94072 -11.65503 -11.55829 -11.34227 -10.91613 -10.84976 -10.74676 -10.54841 -10.47002 -10.30299 -9.99461 -9.92098 -9.68336 -9.39466 -8.97074 -8.53263 -8.40552 -7.68439 -7.00858 -5.76376 -3.06429 1.29864 1.76336 1.78257 1.91589 2.99720 3.36506 3.44861 3.48881 3.50525 3.54980 3.70513 4.18328 4.21576 4.58834 4.63210 4.96702 5.12158 5.13510 5.15161 5.18429 5.31361 5.33209 5.40528 5.42585 5.52005 5.54840 5.65088 5.66304 5.70810 5.72340 5.85626 5.91490 5.95257 6.01275 6.09319 6.36127 6.45572 6.60346 6.72491 6.84837 6.94365 7.02740 7.24009 7.73748 7.85786 7.87250 8.19782 8.39658 8.52393 9.53077 10.02823 10.39808 11.45179 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010175 B = 0.003465 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.093293 B = 8077.841875 C = 9122.291865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.302 6.302 3 C 0.145 3.855 4 C -0.215 4.215 5 C -0.095 4.095 6 C -0.160 4.160 7 C -0.081 4.081 8 C -0.095 4.095 9 C 0.208 3.792 10 H 0.073 0.927 11 C 0.107 3.893 12 N -0.680 5.680 13 C 0.593 3.407 14 O -0.541 6.541 15 C -0.019 4.019 16 C -0.186 4.186 17 C -0.044 4.044 18 C -0.071 4.071 19 O 0.121 5.879 20 N -0.322 5.322 21 N -0.704 5.704 22 C -0.233 4.233 23 H 0.069 0.931 24 C -0.006 4.006 25 N -0.928 5.928 26 Si 0.899 3.101 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 H 0.047 0.953 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.129 0.871 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.411 0.589 40 H 0.178 0.822 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.388 0.612 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.667 -0.446 -12.070 12.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.215 6.215 3 C 0.099 3.901 4 C -0.234 4.234 5 C -0.114 4.114 6 C -0.179 4.179 7 C -0.100 4.100 8 C -0.099 4.099 9 C 0.096 3.904 10 H 0.091 0.909 11 C -0.019 4.019 12 N -0.330 5.330 13 C 0.376 3.624 14 O -0.418 6.418 15 C -0.179 4.179 16 C -0.208 4.208 17 C -0.107 4.107 18 C -0.128 4.128 19 O 0.045 5.955 20 N -0.023 5.023 21 N -0.343 5.343 22 C -0.364 4.364 23 H 0.087 0.913 24 C -0.202 4.202 25 N -0.575 5.575 26 Si 0.730 3.270 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.070 0.930 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.146 0.854 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.248 0.752 40 H 0.195 0.805 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.223 0.777 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.915 -0.275 -11.787 12.145 hybrid contribution 0.263 0.695 1.157 1.375 sum 3.178 0.420 -10.630 11.103 Atomic orbital electron populations 1.22953 0.79555 1.03404 1.00571 1.86154 1.20223 1.26760 1.88337 1.18743 0.91707 0.83916 0.95748 1.21090 0.99373 0.92616 1.10309 1.20744 0.94627 0.96487 0.99493 1.20947 0.93853 0.98129 1.04933 1.21037 1.00110 0.91216 0.97596 1.19900 0.90921 0.96685 1.02347 1.19141 0.90262 0.91286 0.89712 0.90908 1.22060 0.92913 0.86910 0.99974 1.45607 1.07534 1.14752 1.65076 1.16824 0.81845 0.85330 0.78413 1.90743 1.72913 1.29593 1.48544 1.23614 0.94876 0.93986 1.05376 1.22386 0.94765 0.96986 1.06696 1.24462 0.91052 0.93297 1.01924 1.20324 0.87415 1.01174 1.03930 1.84808 1.13331 1.34889 1.62477 1.74262 1.11097 1.01065 1.15843 1.42342 1.73435 1.17695 1.00799 1.19030 1.34526 0.95416 0.87459 0.91307 1.24675 1.01847 0.96075 0.97583 1.69649 1.53176 1.11620 1.23102 0.86394 0.78905 0.78999 0.82700 1.21284 1.21744 1.21307 0.93446 0.88702 0.93029 0.86257 0.86729 0.86622 0.85355 0.92193 0.90696 0.75249 0.80452 0.89773 0.89162 0.89129 0.77728 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.30 -5.34 9.81 -19.42 -0.19 -5.53 16 3 C 0.14 2.62 6.66 -39.22 -0.26 2.36 16 4 C -0.22 -3.38 9.04 -39.43 -0.36 -3.73 16 5 C -0.10 -1.41 10.04 -39.61 -0.40 -1.80 16 6 C -0.16 -2.49 10.04 -39.56 -0.40 -2.89 16 7 C -0.08 -1.41 8.80 -39.61 -0.35 -1.76 16 8 C -0.09 -1.79 4.74 -104.47 -0.49 -2.29 16 9 C 0.21 4.06 2.69 -69.08 -0.19 3.88 16 10 H 0.07 1.35 7.98 -51.93 -0.41 0.93 16 11 C 0.11 2.03 3.97 -4.04 -0.02 2.01 16 12 N -0.68 -13.20 5.39 -61.09 -0.33 -13.52 16 13 C 0.59 11.58 7.85 -12.11 -0.10 11.48 16 14 O -0.54 -11.45 16.95 5.37 0.09 -11.36 16 15 C -0.02 -0.33 7.19 -82.53 -0.59 -0.92 16 16 C -0.19 -2.53 10.92 -39.08 -0.43 -2.96 16 17 C -0.04 -0.51 7.47 -35.35 -0.26 -0.77 16 18 C -0.07 -0.44 10.45 36.01 0.38 -0.06 16 19 O 0.12 1.74 11.18 17.25 0.19 1.93 16 20 N -0.32 -5.57 11.84 33.29 0.39 -5.18 16 21 N -0.70 -16.67 4.72 -54.55 -0.26 -16.93 16 22 C -0.23 -6.23 8.79 -15.06 -0.13 -6.36 16 23 H 0.07 1.85 7.06 -52.49 -0.37 1.48 16 24 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 25 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 26 Si 0.90 22.88 29.55 -169.99 -5.02 17.85 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 29 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 30 H 0.05 0.50 7.66 -51.93 -0.40 0.11 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 33 H 0.12 1.57 6.30 -52.48 -0.33 1.24 16 34 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.13 2.18 5.83 -52.48 -0.31 1.87 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.07 1.55 5.89 -51.93 -0.31 1.25 16 39 H 0.41 8.15 7.90 -40.82 -0.32 7.83 16 40 H 0.18 2.05 8.06 -52.49 -0.42 1.63 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.39 9.95 8.04 -40.82 -0.33 9.62 16 45 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 385.32 15.07 5.81 5.81 Total: -1.00 -33.65 385.32 -6.98 -40.63 By element: Atomic # 1 Polarization: 21.46 SS G_CDS: -5.69 Total: 15.77 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.70 Total: -2.68 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.53 Total: -62.42 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: 0.09 Total: -14.96 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.65 -6.98 -40.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198515374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.711 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds