Wall clock time and date at job start Wed Apr 1 2020 03:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99810 * 2 1 4 4 C 1.38752 * 120.05966 * 359.95652 * 3 2 1 5 5 C 1.38120 * 119.94924 * 180.02562 * 4 3 2 6 6 C 1.38290 * 120.05366 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.11144 * 0.02562 * 6 5 4 8 8 C 1.38168 * 120.05607 * 359.97438 * 7 6 5 9 9 C 1.50705 * 120.02897 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47135 * 224.25416 * 9 8 7 11 11 C 1.53001 * 109.46977 * 344.25126 * 9 8 7 12 12 N 1.46497 * 109.46928 * 174.99719 * 11 9 8 13 13 C 1.34777 * 119.99974 * 179.97438 * 12 11 9 14 14 O 1.21497 * 119.99890 * 359.97438 * 13 12 11 15 15 C 1.48331 * 120.00163 * 180.02562 * 13 12 11 16 16 C 1.42268 * 126.94117 * 179.71084 * 15 13 12 17 17 C 1.35315 * 103.92328 * 179.91243 * 16 15 13 18 18 C 1.50701 * 126.66541 * 180.09088 * 17 16 15 19 19 O 1.34012 * 106.66707 * 0.34191 * 17 16 15 20 20 N 1.20907 * 111.84708 * 359.76719 * 19 17 16 21 21 N 1.46496 * 109.46813 * 104.24767 * 9 8 7 22 22 C 1.36942 * 120.00600 * 300.01026 * 21 9 8 23 23 H 1.07998 * 119.99618 * 4.93670 * 22 21 9 24 24 C 1.38810 * 120.00381 * 184.93936 * 22 21 9 25 25 N 1.31626 * 119.99552 * 359.97438 * 24 22 21 26 26 Si 1.86792 * 120.00030 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47190 * 60.00136 * 26 24 22 28 28 H 1.48507 * 109.47148 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.47232 * 299.99952 * 26 24 22 30 30 H 1.09004 * 109.47065 * 60.00421 * 1 2 3 31 31 H 1.08994 * 109.46943 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47246 * 300.00150 * 1 2 3 33 33 H 1.08004 * 120.02603 * 0.04107 * 4 3 2 34 34 H 1.07994 * 119.97421 * 180.25280 * 5 4 3 35 35 H 1.07995 * 119.94492 * 179.97438 * 6 5 4 36 36 H 1.08007 * 119.97347 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47290 * 294.99987 * 11 9 8 38 38 H 1.09000 * 109.47019 * 54.99751 * 11 9 8 39 39 H 0.97002 * 120.00192 * 0.02562 * 12 11 9 40 40 H 1.07999 * 128.04070 * 0.02562 * 16 15 13 41 41 H 1.08999 * 109.47208 * 180.27630 * 18 17 16 42 42 H 1.08999 * 109.47330 * 300.28095 * 18 17 16 43 43 H 1.09001 * 109.47386 * 60.28069 * 18 17 16 44 44 H 0.97006 * 119.99728 * 120.00594 * 21 9 8 45 45 H 0.97001 * 119.99311 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9208 3.6048 -0.0014 6 6 3.3019 3.6758 -0.0005 7 6 4.0559 2.5172 0.0004 8 6 3.4311 1.2849 0.0009 9 6 4.2537 0.0221 0.0013 10 1 3.8353 -0.6844 -0.7155 11 6 5.6954 0.3525 -0.3905 12 7 6.5211 -0.8519 -0.2746 13 6 7.8348 -0.7995 -0.5715 14 8 8.3340 0.2466 -0.9356 15 6 8.6708 -2.0192 -0.4548 16 6 10.0612 -2.1327 -0.7338 17 6 10.3408 -3.4306 -0.4727 18 6 11.6824 -4.1052 -0.5994 19 8 9.1917 -4.0009 -0.0850 20 7 8.2767 -3.2106 -0.0793 21 7 4.2356 -0.5720 1.3403 22 6 4.7150 0.1357 2.4101 23 1 5.0325 1.1599 2.2814 24 6 4.7931 -0.4633 3.6599 25 7 4.4057 -1.7114 3.8167 26 14 5.4478 0.5020 5.1189 27 1 4.5942 1.6957 5.3460 28 1 5.4283 -0.3574 6.3299 29 1 6.8407 0.9351 4.8411 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.2128 2.3204 -0.0010 34 1 1.3339 4.5113 0.0020 35 1 3.7922 4.6381 -0.0014 36 1 5.1345 2.5753 0.0007 37 1 5.7190 0.7118 -1.4193 38 1 6.0843 1.1249 0.2731 39 1 6.1223 -1.6874 0.0150 40 1 10.7370 -1.3616 -1.0732 41 1 11.5886 -5.1555 -0.3232 42 1 12.0311 -4.0302 -1.6294 43 1 12.3981 -3.6180 0.0629 44 1 3.8838 -1.4668 1.4691 45 1 4.4599 -2.1298 4.6902 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198515374.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:42 Heat of formation + Delta-G solvation = 12.737758 kcal Electronic energy + Delta-G solvation = -30188.725362 eV Core-core repulsion = 25981.909317 eV Total energy + Delta-G solvation = -4206.816045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.15425 -41.26682 -40.59120 -38.55750 -37.35586 -35.28820 -35.13176 -34.32284 -33.58225 -31.47800 -30.86001 -29.18764 -28.68298 -27.91374 -26.61166 -25.33630 -24.06091 -23.61901 -22.72625 -21.44173 -21.00310 -19.43066 -18.92721 -18.77339 -18.57104 -17.90246 -17.29679 -17.10630 -16.56027 -16.47562 -16.34244 -16.16506 -15.63563 -15.39188 -15.38875 -14.86822 -14.68143 -14.48345 -14.29483 -14.03686 -13.94388 -13.70915 -13.42815 -13.29871 -13.11217 -12.88765 -12.76332 -12.71651 -12.38923 -12.29689 -11.89905 -11.87684 -11.77078 -11.64538 -11.54504 -11.48261 -10.96518 -10.38766 -10.12066 -9.72827 -9.12188 -8.86722 -7.91814 -5.19199 0.07683 0.49510 0.63890 0.68400 1.40541 1.41552 1.46805 1.86627 2.06265 2.17069 2.52898 2.55256 2.92598 2.93622 3.39664 3.57352 3.79236 3.95287 3.98877 3.99716 4.14759 4.21293 4.28491 4.33261 4.36960 4.40274 4.43088 4.57480 4.62951 4.72011 4.74446 4.79856 4.81604 4.84239 4.86782 5.05417 5.16437 5.26565 5.30573 5.52718 5.55011 5.60124 5.71940 6.00268 6.27197 6.34013 6.63432 6.91772 7.09191 7.36750 8.04214 8.31969 9.30371 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010175 B = 0.003465 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2751.093293 B = 8077.841875 C = 9122.291865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.330 6.330 3 C 0.126 3.874 4 C -0.217 4.217 5 C -0.088 4.088 6 C -0.164 4.164 7 C -0.094 4.094 8 C -0.126 4.126 9 C 0.214 3.786 10 H 0.078 0.922 11 C 0.117 3.883 12 N -0.684 5.684 13 C 0.589 3.411 14 O -0.563 6.563 15 C -0.051 4.051 16 C -0.199 4.199 17 C -0.019 4.019 18 C -0.070 4.070 19 O 0.125 5.875 20 N -0.353 5.353 21 N -0.708 5.708 22 C -0.210 4.210 23 H 0.066 0.934 24 C -0.066 4.066 25 N -0.960 5.960 26 Si 0.949 3.051 27 H -0.281 1.281 28 H -0.296 1.296 29 H -0.288 1.288 30 H 0.071 0.929 31 H 0.109 0.891 32 H 0.053 0.947 33 H 0.146 0.854 34 H 0.152 0.848 35 H 0.142 0.858 36 H 0.124 0.876 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.408 0.592 40 H 0.196 0.804 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.376 0.624 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.138 0.525 -12.970 13.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.244 6.244 3 C 0.080 3.920 4 C -0.235 4.235 5 C -0.106 4.106 6 C -0.182 4.182 7 C -0.113 4.113 8 C -0.129 4.129 9 C 0.104 3.896 10 H 0.096 0.904 11 C -0.008 4.008 12 N -0.333 5.333 13 C 0.374 3.626 14 O -0.442 6.442 15 C -0.208 4.208 16 C -0.222 4.222 17 C -0.082 4.082 18 C -0.127 4.127 19 O 0.047 5.953 20 N -0.053 5.053 21 N -0.346 5.346 22 C -0.342 4.342 23 H 0.084 0.916 24 C -0.258 4.258 25 N -0.611 5.611 26 Si 0.780 3.220 27 H -0.208 1.208 28 H -0.222 1.222 29 H -0.215 1.215 30 H 0.090 0.910 31 H 0.127 0.873 32 H 0.071 0.929 33 H 0.164 0.836 34 H 0.169 0.831 35 H 0.160 0.840 36 H 0.142 0.858 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.243 0.757 40 H 0.213 0.787 41 H 0.118 0.882 42 H 0.134 0.866 43 H 0.128 0.872 44 H 0.209 0.791 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.368 0.743 -12.729 13.188 hybrid contribution 0.119 0.401 1.292 1.358 sum 3.487 1.144 -11.436 12.011 Atomic orbital electron populations 1.23229 0.77294 1.04889 1.01767 1.86108 1.22724 1.27112 1.88445 1.18986 0.91744 0.84971 0.96261 1.21448 1.00740 0.92092 1.09245 1.21213 0.94599 0.97551 0.97269 1.21287 0.94480 0.98428 1.04007 1.21141 1.00252 0.91721 0.98177 1.19817 0.91610 0.96373 1.05084 1.19196 0.90630 0.92085 0.87643 0.90412 1.21947 0.92171 0.86359 1.00347 1.45688 1.07899 1.14588 1.65125 1.17164 0.81819 0.85986 0.77648 1.90705 1.73265 1.30639 1.49633 1.23572 0.96390 0.93419 1.07427 1.22665 0.93315 0.98564 1.07659 1.25388 0.91603 0.92622 0.98582 1.20676 0.84235 1.01757 1.06028 1.84763 1.14083 1.34498 1.61939 1.74260 1.12627 1.01376 1.17044 1.42355 1.73290 1.17126 1.01863 1.19181 1.31925 0.95051 0.88028 0.91615 1.25265 1.03737 0.96999 0.99805 1.69780 1.55603 1.12876 1.22866 0.85570 0.78205 0.77909 0.80289 1.20790 1.22179 1.21487 0.91007 0.87286 0.92871 0.83621 0.83057 0.84020 0.85785 0.90584 0.92606 0.75656 0.78696 0.88153 0.86612 0.87207 0.79137 0.94400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 9.81 113.37 1.11 1.66 16 2 O -0.33 -11.64 9.81 -92.39 -0.91 -12.55 16 3 C 0.13 4.50 6.66 22.51 0.15 4.65 16 4 C -0.22 -6.30 9.04 22.36 0.20 -6.10 16 5 C -0.09 -2.33 10.04 22.25 0.22 -2.11 16 6 C -0.16 -4.74 10.04 22.28 0.22 -4.52 16 7 C -0.09 -3.27 8.80 22.25 0.20 -3.07 16 8 C -0.13 -4.78 4.74 -19.77 -0.09 -4.88 16 9 C 0.21 8.65 2.69 44.25 0.12 8.77 16 10 H 0.08 3.00 7.98 -2.39 -0.02 2.98 16 11 C 0.12 4.60 3.97 86.38 0.34 4.94 16 12 N -0.68 -27.74 5.39 -465.50 -2.51 -30.25 16 13 C 0.59 23.86 7.85 86.93 0.68 24.54 16 14 O -0.56 -24.51 16.95 -3.71 -0.06 -24.57 16 15 C -0.05 -1.79 7.19 42.96 0.31 -1.49 16 16 C -0.20 -5.27 10.92 22.60 0.25 -5.03 16 17 C -0.02 -0.39 7.47 25.01 0.19 -0.21 16 18 C -0.07 -0.60 10.45 71.24 0.74 0.14 16 19 O 0.12 3.53 11.18 71.92 0.80 4.33 16 20 N -0.35 -12.51 11.84 -49.52 -0.59 -13.09 16 21 N -0.71 -34.72 4.72 -326.50 -1.54 -36.26 16 22 C -0.21 -11.46 8.79 84.03 0.74 -10.72 16 23 H 0.07 3.60 7.06 -2.91 -0.02 3.58 16 24 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 25 N -0.96 -58.68 13.06 21.65 0.28 -58.40 16 26 Si 0.95 47.90 29.55 68.60 2.03 49.93 16 27 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 28 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 29 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 30 H 0.07 1.37 7.66 -2.39 -0.02 1.35 16 31 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 1.25 7.66 -2.39 -0.02 1.24 16 33 H 0.15 3.35 6.30 -2.91 -0.02 3.34 16 34 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 35 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 36 H 0.12 4.29 5.83 -2.91 -0.02 4.27 16 37 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 38 H 0.06 2.41 5.89 -2.39 -0.01 2.39 16 39 H 0.41 17.09 7.90 -92.71 -0.73 16.36 16 40 H 0.20 4.27 8.06 -2.91 -0.02 4.25 16 41 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.38 20.11 8.04 -92.70 -0.75 19.37 16 45 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -75.59 385.32 2.94 -72.65 By element: Atomic # 1 Polarization: 45.36 SS G_CDS: -0.42 Total: 44.94 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 5.85 Total: 3.27 kcal Atomic # 7 Polarization: -133.65 SS G_CDS: -4.35 Total: -138.01 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -0.17 Total: -32.79 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 2.03 Total: 49.93 kcal Total: -75.59 2.94 -72.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198515374.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.385 kcal (2) G-P(sol) polarization free energy of solvation -75.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds