Wall clock time and date at job start Wed Apr 1 2020 03:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35904 * 117.00085 * 2 1 4 4 C 1.38756 * 120.05413 * 0.25361 * 3 2 1 5 5 C 1.38128 * 119.94037 * 180.27692 * 4 3 2 6 6 C 1.38283 * 120.05734 * 359.72324 * 5 4 3 7 7 C 1.38243 * 120.11246 * 0.02562 * 6 5 4 8 8 C 1.38168 * 120.05562 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.02895 * 179.97438 * 8 7 6 10 10 H 1.09006 * 109.47260 * 220.00279 * 9 8 7 11 11 C 1.53003 * 109.47380 * 99.99978 * 9 8 7 12 12 N 1.46500 * 109.47558 * 184.99931 * 11 9 8 13 13 C 1.34769 * 120.00048 * 180.02562 * 12 11 9 14 14 O 1.21683 * 120.00061 * 359.97438 * 13 12 11 15 15 C 1.46722 * 119.99958 * 180.02562 * 13 12 11 16 16 O 1.35341 * 126.64334 * 0.13519 * 15 13 12 17 17 C 1.33670 * 107.68680 * 180.26903 * 16 15 13 18 18 N 1.30625 * 109.14957 * 359.75815 * 17 16 15 19 19 C 1.33692 * 108.99356 * 359.97438 * 18 17 16 20 20 C 1.50706 * 126.26771 * 179.97438 * 19 18 17 21 21 N 1.46507 * 109.47296 * 340.00172 * 9 8 7 22 22 C 1.36932 * 119.99768 * 275.00195 * 21 9 8 23 23 H 1.08002 * 120.00243 * 359.97438 * 22 21 9 24 24 C 1.38812 * 119.99815 * 179.97438 * 22 21 9 25 25 N 1.31623 * 120.00117 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00259 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47106 * 89.99746 * 26 24 22 28 28 H 1.48495 * 109.47140 * 209.99911 * 26 24 22 29 29 H 1.48502 * 109.46810 * 330.00110 * 26 24 22 30 30 H 1.09001 * 109.47237 * 299.99946 * 1 2 3 31 31 H 1.09003 * 109.47071 * 59.99827 * 1 2 3 32 32 H 1.09000 * 109.47007 * 180.02562 * 1 2 3 33 33 H 1.07994 * 120.03024 * 0.02562 * 4 3 2 34 34 H 1.07996 * 119.96883 * 179.74668 * 5 4 3 35 35 H 1.08001 * 119.94333 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.97417 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.46579 * 65.00211 * 11 9 8 38 38 H 1.08993 * 109.46959 * 305.00316 * 11 9 8 39 39 H 0.96998 * 119.99355 * 0.02562 * 12 11 9 40 40 H 1.07996 * 125.42663 * 179.77628 * 17 16 15 41 41 H 1.08999 * 109.46995 * 90.02764 * 20 19 18 42 42 H 1.08994 * 109.46790 * 210.02451 * 20 19 18 43 43 H 1.08997 * 109.47305 * 330.02892 * 20 19 18 44 44 H 0.96993 * 119.99850 * 94.99927 * 21 9 8 45 45 H 0.96994 * 119.99872 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6048 -0.0005 6 6 3.3019 3.6758 -0.0058 7 6 4.0560 2.5172 -0.0058 8 6 3.4311 1.2849 -0.0001 9 6 4.2537 0.0222 -0.0007 10 1 3.7895 -0.7136 -0.6575 11 6 4.3286 -0.5385 1.4209 12 7 5.2248 -1.6972 1.4423 13 6 5.4447 -2.3577 2.5963 14 8 4.8994 -1.9913 3.6205 15 6 6.3426 -3.5179 2.6179 16 8 7.0180 -4.0363 1.5658 17 6 7.7147 -5.0876 2.0086 18 7 7.5008 -5.2349 3.2888 19 6 6.6607 -4.2807 3.7022 20 6 6.1525 -4.0881 5.1079 21 7 5.6057 0.3203 -0.4799 22 6 5.8678 0.3358 -1.8238 23 1 5.0781 0.1278 -2.5305 24 6 7.1487 0.6188 -2.2779 25 7 8.1111 0.8728 -1.4166 26 14 7.5066 0.6392 -4.1112 27 1 7.2837 2.0073 -4.6438 28 1 8.9181 0.2410 -4.3444 29 1 6.6025 -0.3146 -4.8026 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2129 2.3204 0.0099 34 1 1.3340 4.5114 -0.0005 35 1 3.7922 4.6381 -0.0099 36 1 5.1344 2.5752 -0.0096 37 1 3.3332 -0.8430 1.7442 38 1 4.7106 0.2287 2.0943 39 1 5.6597 -1.9890 0.6259 40 1 8.3529 -5.7151 1.4043 41 1 6.8279 -3.4272 5.6511 42 1 5.1573 -3.6447 5.0768 43 1 6.1048 -5.0531 5.6124 44 1 6.3150 0.5068 0.1548 45 1 9.0060 1.0709 -1.7339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198648167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:54 Heat of formation + Delta-G solvation = -6.564333 kcal Electronic energy + Delta-G solvation = -30230.383246 eV Core-core repulsion = 26022.730199 eV Total energy + Delta-G solvation = -4207.653047 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.38165 -40.00080 -39.20682 -37.24964 -35.98596 -35.26143 -33.62154 -32.11484 -31.53965 -29.77535 -29.70838 -28.45152 -27.22719 -26.85750 -24.23039 -23.44371 -22.74411 -21.58450 -21.49764 -20.39054 -20.07618 -18.18118 -17.70916 -17.25938 -16.82597 -16.41502 -15.98775 -15.89992 -15.46349 -15.22259 -14.87388 -14.53968 -14.39793 -13.96127 -13.91741 -13.65295 -13.28625 -13.21976 -13.04538 -12.90229 -12.81687 -12.41403 -12.19895 -12.10200 -11.73686 -11.28452 -11.09265 -11.01546 -10.90476 -10.87573 -10.82986 -10.78153 -10.51803 -10.16528 -9.97338 -9.78689 -9.10273 -9.03820 -8.64367 -8.36100 -7.76109 -7.15516 -5.87859 -3.19708 0.90561 1.77840 1.86526 2.44480 2.56203 3.25499 3.37153 3.43920 3.44467 3.47037 3.53940 4.04526 4.21381 4.49243 4.74774 4.90233 5.03521 5.13131 5.21097 5.25009 5.41565 5.46672 5.48140 5.51755 5.53467 5.55542 5.66295 5.67677 5.82666 5.84656 5.90444 5.92039 5.95833 6.22119 6.27845 6.29746 6.40859 6.55629 6.65289 6.74952 6.89541 7.14698 7.32300 7.48619 7.64472 7.72401 7.79142 8.27859 8.30336 9.41449 9.90975 10.28245 11.33358 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007675 B = 0.004157 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3647.249469 B = 6733.392343 C = 9355.049302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.122 3.878 4 C -0.219 4.219 5 C -0.094 4.094 6 C -0.164 4.164 7 C -0.043 4.043 8 C -0.117 4.117 9 C 0.208 3.792 10 H 0.071 0.929 11 C 0.123 3.877 12 N -0.696 5.696 13 C 0.604 3.396 14 O -0.527 6.527 15 C -0.104 4.104 16 O -0.183 6.183 17 C 0.198 3.802 18 N -0.497 5.497 19 C 0.069 3.931 20 C -0.079 4.079 21 N -0.716 5.716 22 C -0.243 4.243 23 H 0.071 0.929 24 C -0.005 4.005 25 N -0.928 5.928 26 Si 0.905 3.095 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.416 0.584 40 H 0.255 0.745 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.073 0.927 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.792 -5.120 6.547 12.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.077 3.923 4 C -0.238 4.238 5 C -0.112 4.112 6 C -0.182 4.182 7 C -0.061 4.061 8 C -0.121 4.121 9 C 0.097 3.903 10 H 0.089 0.911 11 C -0.001 4.001 12 N -0.346 5.346 13 C 0.388 3.612 14 O -0.407 6.407 15 C -0.160 4.160 16 O -0.068 6.068 17 C -0.027 4.027 18 N -0.227 5.227 19 C -0.055 4.055 20 C -0.136 4.136 21 N -0.358 5.358 22 C -0.374 4.374 23 H 0.089 0.911 24 C -0.201 4.201 25 N -0.576 5.576 26 Si 0.736 3.264 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.160 0.840 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.253 0.747 40 H 0.270 0.730 41 H 0.098 0.902 42 H 0.113 0.887 43 H 0.092 0.908 44 H 0.221 0.779 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.803 -5.505 7.337 13.425 hybrid contribution 0.308 0.712 -1.977 2.124 sum -9.495 -4.792 5.360 11.910 Atomic orbital electron populations 1.22961 0.79358 1.03352 1.00891 1.86084 1.20505 1.27202 1.88936 1.18948 0.91941 0.83816 0.97625 1.21050 0.99215 0.92610 1.10926 1.20795 0.94730 0.96459 0.99246 1.21081 0.93709 0.98576 1.04848 1.21100 1.01361 0.90286 0.93355 1.20382 0.89900 0.98192 1.03671 1.19237 0.87222 0.91718 0.92096 0.91138 1.21659 0.93331 0.86813 0.98326 1.45895 1.47212 1.30539 1.10947 1.16310 0.80040 0.80382 0.84441 1.90821 1.50571 1.66462 1.32812 1.23047 1.04179 1.02160 0.86565 1.84569 1.47098 1.37741 1.37342 1.28290 0.95493 0.87891 0.91025 1.70323 1.16869 1.24618 1.10905 1.22008 0.94956 0.91050 0.97472 1.20356 1.02620 1.02664 0.87916 1.42490 1.04226 1.83739 1.05297 1.19183 0.94225 1.40881 0.83064 0.91071 1.24711 0.95930 1.02036 0.97462 1.69656 1.01539 1.53841 1.32530 0.86235 0.77184 0.77738 0.85276 1.21685 1.21815 1.20727 0.93062 0.93091 0.88726 0.86356 0.86769 0.86558 0.84002 0.90776 0.91345 0.74714 0.72973 0.90165 0.88658 0.90783 0.77863 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.73 9.71 -19.44 -0.19 -4.92 16 3 C 0.12 2.00 6.66 -39.22 -0.26 1.74 16 4 C -0.22 -3.16 9.04 -39.43 -0.36 -3.52 16 5 C -0.09 -1.34 10.04 -39.61 -0.40 -1.74 16 6 C -0.16 -2.61 10.04 -39.56 -0.40 -3.01 16 7 C -0.04 -0.79 9.32 -39.61 -0.37 -1.16 16 8 C -0.12 -2.14 5.06 -104.48 -0.53 -2.67 16 9 C 0.21 3.94 2.32 -69.08 -0.16 3.78 16 10 H 0.07 1.40 7.78 -51.93 -0.40 1.00 16 11 C 0.12 2.13 5.21 -4.04 -0.02 2.11 16 12 N -0.70 -11.97 5.38 -61.61 -0.33 -12.30 16 13 C 0.60 10.41 7.79 -12.84 -0.10 10.31 16 14 O -0.53 -9.77 14.79 5.20 0.08 -9.69 16 15 C -0.10 -1.66 7.18 -36.84 -0.26 -1.92 16 16 O -0.18 -2.68 10.57 4.42 0.05 -2.64 16 17 C 0.20 2.32 13.21 52.25 0.69 3.01 16 18 N -0.50 -6.94 11.26 -10.88 -0.12 -7.06 16 19 C 0.07 1.02 7.16 -82.46 -0.59 0.43 16 20 C -0.08 -0.98 9.88 36.01 0.36 -0.62 16 21 N -0.72 -16.00 3.17 -54.55 -0.17 -16.17 16 22 C -0.24 -6.15 9.92 -15.06 -0.15 -6.30 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 25 N -0.93 -26.05 13.06 55.49 0.72 -25.33 16 26 Si 0.90 21.37 29.55 -169.99 -5.02 16.35 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H 0.05 0.47 7.65 -51.93 -0.40 0.07 16 31 H 0.05 0.48 7.67 -51.93 -0.40 0.09 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.12 1.38 6.30 -52.49 -0.33 1.05 16 34 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.14 2.92 7.14 -52.49 -0.37 2.55 16 37 H 0.07 1.25 8.13 -51.93 -0.42 0.83 16 38 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 39 H 0.42 7.41 7.93 -40.82 -0.32 7.09 16 40 H 0.25 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.09 1.26 6.45 -51.93 -0.33 0.92 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.39 9.33 7.80 -40.82 -0.32 9.01 16 45 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 LS Contribution 386.70 15.07 5.83 5.83 Total: -1.00 -30.97 386.70 -6.63 -37.60 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: -5.81 Total: 16.81 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.66 Total: 1.53 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.10 Total: -60.86 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.07 Total: -17.25 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.97 -6.63 -37.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198648167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.037 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds