Wall clock time and date at job start Wed Apr 1 2020 03:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35904 * 117.00085 * 2 1 4 4 C 1.38756 * 120.05413 * 0.25361 * 3 2 1 5 5 C 1.38128 * 119.94037 * 180.27692 * 4 3 2 6 6 C 1.38283 * 120.05734 * 359.72324 * 5 4 3 7 7 C 1.38243 * 120.11246 * 0.02562 * 6 5 4 8 8 C 1.38168 * 120.05562 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.02895 * 179.97438 * 8 7 6 10 10 H 1.09006 * 109.47260 * 220.00279 * 9 8 7 11 11 C 1.53003 * 109.47380 * 99.99978 * 9 8 7 12 12 N 1.46500 * 109.47558 * 184.99931 * 11 9 8 13 13 C 1.34769 * 120.00048 * 180.02562 * 12 11 9 14 14 O 1.21683 * 120.00061 * 359.97438 * 13 12 11 15 15 C 1.46722 * 119.99958 * 180.02562 * 13 12 11 16 16 O 1.35341 * 126.64334 * 0.13519 * 15 13 12 17 17 C 1.33670 * 107.68680 * 180.26903 * 16 15 13 18 18 N 1.30625 * 109.14957 * 359.75815 * 17 16 15 19 19 C 1.33692 * 108.99356 * 359.97438 * 18 17 16 20 20 C 1.50706 * 126.26771 * 179.97438 * 19 18 17 21 21 N 1.46507 * 109.47296 * 340.00172 * 9 8 7 22 22 C 1.36932 * 119.99768 * 275.00195 * 21 9 8 23 23 H 1.08002 * 120.00243 * 359.97438 * 22 21 9 24 24 C 1.38812 * 119.99815 * 179.97438 * 22 21 9 25 25 N 1.31623 * 120.00117 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00259 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47106 * 89.99746 * 26 24 22 28 28 H 1.48495 * 109.47140 * 209.99911 * 26 24 22 29 29 H 1.48502 * 109.46810 * 330.00110 * 26 24 22 30 30 H 1.09001 * 109.47237 * 299.99946 * 1 2 3 31 31 H 1.09003 * 109.47071 * 59.99827 * 1 2 3 32 32 H 1.09000 * 109.47007 * 180.02562 * 1 2 3 33 33 H 1.07994 * 120.03024 * 0.02562 * 4 3 2 34 34 H 1.07996 * 119.96883 * 179.74668 * 5 4 3 35 35 H 1.08001 * 119.94333 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.97417 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.46579 * 65.00211 * 11 9 8 38 38 H 1.08993 * 109.46959 * 305.00316 * 11 9 8 39 39 H 0.96998 * 119.99355 * 0.02562 * 12 11 9 40 40 H 1.07996 * 125.42663 * 179.77628 * 17 16 15 41 41 H 1.08999 * 109.46995 * 90.02764 * 20 19 18 42 42 H 1.08994 * 109.46790 * 210.02451 * 20 19 18 43 43 H 1.08997 * 109.47305 * 330.02892 * 20 19 18 44 44 H 0.96993 * 119.99850 * 94.99927 * 21 9 8 45 45 H 0.96994 * 119.99872 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0053 5 6 1.9209 3.6048 -0.0005 6 6 3.3019 3.6758 -0.0058 7 6 4.0560 2.5172 -0.0058 8 6 3.4311 1.2849 -0.0001 9 6 4.2537 0.0222 -0.0007 10 1 3.7895 -0.7136 -0.6575 11 6 4.3286 -0.5385 1.4209 12 7 5.2248 -1.6972 1.4423 13 6 5.4447 -2.3577 2.5963 14 8 4.8994 -1.9913 3.6205 15 6 6.3426 -3.5179 2.6179 16 8 7.0180 -4.0363 1.5658 17 6 7.7147 -5.0876 2.0086 18 7 7.5008 -5.2349 3.2888 19 6 6.6607 -4.2807 3.7022 20 6 6.1525 -4.0881 5.1079 21 7 5.6057 0.3203 -0.4799 22 6 5.8678 0.3358 -1.8238 23 1 5.0781 0.1278 -2.5305 24 6 7.1487 0.6188 -2.2779 25 7 8.1111 0.8728 -1.4166 26 14 7.5066 0.6392 -4.1112 27 1 7.2837 2.0073 -4.6438 28 1 8.9181 0.2410 -4.3444 29 1 6.6025 -0.3146 -4.8026 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2129 2.3204 0.0099 34 1 1.3340 4.5114 -0.0005 35 1 3.7922 4.6381 -0.0099 36 1 5.1344 2.5752 -0.0096 37 1 3.3332 -0.8430 1.7442 38 1 4.7106 0.2287 2.0943 39 1 5.6597 -1.9890 0.6259 40 1 8.3529 -5.7151 1.4043 41 1 6.8279 -3.4272 5.6511 42 1 5.1573 -3.6447 5.0768 43 1 6.1048 -5.0531 5.6124 44 1 6.3150 0.5068 0.1548 45 1 9.0060 1.0709 -1.7339 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198648167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:53 Heat of formation + Delta-G solvation = -29.127514 kcal Electronic energy + Delta-G solvation = -30231.361659 eV Core-core repulsion = 26022.730199 eV Total energy + Delta-G solvation = -4208.631460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.47099 -41.24468 -40.54393 -38.50524 -37.39430 -36.41576 -35.23821 -33.74939 -32.65047 -31.34280 -30.94394 -29.75487 -28.39270 -27.91996 -25.82057 -24.92132 -24.00444 -22.79893 -22.63650 -21.73450 -21.43351 -19.56160 -19.17790 -18.71686 -17.96491 -17.49331 -17.38704 -17.16611 -16.62275 -16.48188 -16.24849 -16.07257 -15.64434 -15.38554 -15.16973 -15.14724 -14.75006 -14.38593 -14.29046 -14.17243 -13.99472 -13.79202 -13.48343 -13.20670 -12.91003 -12.83887 -12.71798 -12.51630 -12.27972 -12.15887 -12.06420 -12.00725 -11.91161 -11.84728 -11.60517 -11.29734 -10.98562 -10.35151 -9.89924 -9.66303 -9.09159 -8.95404 -7.91845 -5.21921 -0.24055 0.51950 0.61701 1.38278 1.46506 1.48531 1.49953 1.57149 1.95547 2.18161 2.50450 2.56479 2.94273 3.13046 3.41600 3.66612 3.69097 3.77245 3.96855 4.08271 4.15571 4.29479 4.39054 4.39714 4.43263 4.45452 4.47180 4.58901 4.63925 4.68803 4.75125 4.78784 4.83428 4.92211 4.99542 5.04300 5.20111 5.26515 5.33693 5.46093 5.55472 5.64484 5.84439 6.03174 6.26429 6.27882 6.53974 6.59277 6.92005 7.36165 8.02072 8.30786 9.29986 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007675 B = 0.004157 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3647.249469 B = 6733.392343 C = 9355.049302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.118 3.882 4 C -0.213 4.213 5 C -0.084 4.084 6 C -0.172 4.172 7 C -0.066 4.066 8 C -0.143 4.143 9 C 0.218 3.782 10 H 0.060 0.940 11 C 0.137 3.863 12 N -0.697 5.697 13 C 0.604 3.396 14 O -0.546 6.546 15 C -0.139 4.139 16 O -0.197 6.197 17 C 0.224 3.776 18 N -0.519 5.519 19 C 0.075 3.925 20 C -0.078 4.078 21 N -0.718 5.718 22 C -0.230 4.230 23 H 0.069 0.931 24 C -0.059 4.059 25 N -0.961 5.961 26 Si 0.961 3.039 27 H -0.293 1.293 28 H -0.297 1.297 29 H -0.272 1.272 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.114 0.886 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.131 0.869 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.412 0.588 40 H 0.306 0.694 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.376 0.624 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.722 -5.625 6.240 14.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.073 3.927 4 C -0.232 4.232 5 C -0.102 4.102 6 C -0.190 4.190 7 C -0.084 4.084 8 C -0.147 4.147 9 C 0.108 3.892 10 H 0.078 0.922 11 C 0.013 3.987 12 N -0.347 5.347 13 C 0.390 3.610 14 O -0.428 6.428 15 C -0.194 4.194 16 O -0.083 6.083 17 C -0.001 4.001 18 N -0.248 5.248 19 C -0.049 4.049 20 C -0.134 4.134 21 N -0.358 5.358 22 C -0.361 4.361 23 H 0.087 0.913 24 C -0.252 4.252 25 N -0.612 5.612 26 Si 0.791 3.209 27 H -0.220 1.220 28 H -0.224 1.224 29 H -0.197 1.197 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.149 0.851 36 H 0.127 0.873 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.248 0.752 40 H 0.321 0.679 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.209 0.791 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.795 -6.026 7.040 15.000 hybrid contribution 0.802 0.784 -1.839 2.154 sum -10.993 -5.242 5.201 13.243 Atomic orbital electron populations 1.23308 0.76781 1.05228 1.02194 1.86060 1.23184 1.26773 1.88719 1.18983 0.91349 0.85176 0.97219 1.21448 1.00888 0.91727 1.09132 1.21213 0.94030 0.97989 0.96995 1.21279 0.94817 0.98168 1.04779 1.20916 1.00032 0.91776 0.95698 1.20178 0.91171 0.97227 1.06095 1.19185 0.85491 0.92131 0.92381 0.92198 1.21472 0.93590 0.86560 0.97084 1.45869 1.47313 1.30536 1.10968 1.16473 0.79941 0.80625 0.83943 1.90792 1.51508 1.67279 1.33171 1.22758 1.06108 1.03047 0.87531 1.84566 1.47658 1.38766 1.37337 1.29574 0.93362 0.86250 0.90873 1.70389 1.17562 1.24821 1.12069 1.22397 0.94086 0.90436 0.97967 1.20412 1.02080 1.03848 0.87110 1.42459 1.05425 1.83780 1.04128 1.19377 0.93861 1.38613 0.84259 0.91315 1.25319 0.96037 1.03130 1.00698 1.69796 1.01511 1.55974 1.33876 0.85329 0.76613 0.77447 0.81468 1.22048 1.22388 1.19730 0.91493 0.91859 0.86810 0.82918 0.83008 0.85135 0.87345 0.90074 0.92533 0.75151 0.67918 0.89475 0.89601 0.88774 0.79145 0.94126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.46 16 2 O -0.33 -9.60 9.71 -92.47 -0.90 -10.50 16 3 C 0.12 3.75 6.66 22.51 0.15 3.90 16 4 C -0.21 -5.51 9.04 22.37 0.20 -5.31 16 5 C -0.08 -2.16 10.04 22.25 0.22 -1.94 16 6 C -0.17 -5.36 10.04 22.28 0.22 -5.13 16 7 C -0.07 -2.51 9.32 22.25 0.21 -2.30 16 8 C -0.14 -5.33 5.06 -19.77 -0.10 -5.43 16 9 C 0.22 8.58 2.32 44.24 0.10 8.68 16 10 H 0.06 2.47 7.78 -2.38 -0.02 2.45 16 11 C 0.14 4.97 5.21 86.38 0.45 5.42 16 12 N -0.70 -25.11 5.38 -467.06 -2.51 -27.62 16 13 C 0.60 21.58 7.79 86.46 0.67 22.25 16 14 O -0.55 -20.89 14.79 -4.29 -0.06 -20.96 16 15 C -0.14 -4.51 7.18 24.04 0.17 -4.33 16 16 O -0.20 -5.72 10.57 -7.11 -0.08 -5.79 16 17 C 0.22 4.79 13.21 130.42 1.72 6.51 16 18 N -0.52 -13.69 11.26 -303.11 -3.41 -17.10 16 19 C 0.07 2.19 7.16 41.83 0.30 2.49 16 20 C -0.08 -1.90 9.88 71.24 0.70 -1.19 16 21 N -0.72 -33.61 3.17 -326.48 -1.03 -34.64 16 22 C -0.23 -11.95 9.92 84.03 0.83 -11.12 16 23 H 0.07 3.57 7.83 -2.91 -0.02 3.54 16 24 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 25 N -0.96 -55.83 13.06 21.65 0.28 -55.55 16 26 Si 0.96 44.69 29.55 68.60 2.03 46.72 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 28 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 29 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 30 H 0.07 1.00 7.65 -2.39 -0.02 0.98 16 31 H 0.06 0.99 7.67 -2.39 -0.02 0.97 16 32 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.15 2.85 6.30 -2.91 -0.02 2.83 16 34 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 36 H 0.11 4.81 7.14 -2.91 -0.02 4.79 16 37 H 0.08 2.81 8.13 -2.39 -0.02 2.79 16 38 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.41 15.42 7.93 -92.71 -0.74 14.69 16 40 H 0.31 2.58 8.06 -2.91 -0.02 2.56 16 41 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.09 2.28 6.45 -2.39 -0.02 2.26 16 43 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.38 19.22 7.80 -92.71 -0.72 18.50 16 45 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -69.45 386.70 1.35 -68.10 By element: Atomic # 1 Polarization: 46.53 SS G_CDS: -0.41 Total: 46.12 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 7.44 Total: 11.23 kcal Atomic # 7 Polarization: -128.23 SS G_CDS: -6.68 Total: -134.91 kcal Atomic # 8 Polarization: -36.22 SS G_CDS: -1.04 Total: -37.25 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -69.45 1.35 -68.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198648167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.970 kcal (2) G-P(sol) polarization free energy of solvation -69.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds