Wall clock time and date at job start Wed Apr 1 2020 04:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00251 * 2 1 4 4 C 1.38753 * 120.05684 * 359.95691 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05457 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.02482 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.46613 * 145.00276 * 9 8 7 11 11 C 1.52997 * 109.47072 * 264.99471 * 9 8 7 12 12 N 1.46500 * 109.47006 * 175.00174 * 11 9 8 13 13 C 1.34782 * 119.99905 * 180.02562 * 12 11 9 14 14 O 1.21615 * 119.99956 * 359.97438 * 13 12 11 15 15 C 1.47415 * 119.99998 * 180.02562 * 13 12 11 16 16 C 1.36092 * 126.44886 * 179.71497 * 15 13 12 17 17 O 1.34257 * 106.94955 * 179.90315 * 16 15 13 18 18 C 1.34052 * 108.22738 * 0.35592 * 17 16 15 19 19 C 1.50696 * 125.37788 * 179.80643 * 18 17 16 20 20 N 1.29931 * 109.24091 * 359.77841 * 18 17 16 21 21 N 1.46490 * 109.47427 * 25.00087 * 9 8 7 22 22 C 1.36946 * 120.00091 * 84.99917 * 21 9 8 23 23 H 1.07993 * 119.99950 * 359.97438 * 22 21 9 24 24 C 1.38818 * 119.99882 * 180.02562 * 22 21 9 25 25 N 1.31618 * 119.99779 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99853 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47169 * 59.99980 * 26 24 22 28 28 H 1.48495 * 109.47318 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.46806 * 299.99879 * 26 24 22 30 30 H 1.08993 * 109.47446 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47023 * 300.00310 * 1 2 3 32 32 H 1.09001 * 109.47048 * 59.99886 * 1 2 3 33 33 H 1.08002 * 120.02760 * 0.04235 * 4 3 2 34 34 H 1.07997 * 119.97891 * 180.25368 * 5 4 3 35 35 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 36 36 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 37 37 H 1.08992 * 109.47467 * 295.00629 * 11 9 8 38 38 H 1.09009 * 109.46662 * 55.00615 * 11 9 8 39 39 H 0.96999 * 120.00114 * 0.02562 * 12 11 9 40 40 H 1.08002 * 126.52327 * 0.02673 * 16 15 13 41 41 H 1.09008 * 109.47272 * 269.96325 * 19 18 17 42 42 H 1.09002 * 109.47686 * 29.96288 * 19 18 17 43 43 H 1.08997 * 109.47172 * 149.96803 * 19 18 17 44 44 H 0.96999 * 120.00485 * 264.99635 * 21 9 8 45 45 H 0.97000 * 119.99459 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0009 5 6 1.9210 3.6048 -0.0014 6 6 3.3021 3.6757 -0.0005 7 6 4.0561 2.5170 0.0004 8 6 3.4312 1.2847 0.0009 9 6 4.2538 0.0221 0.0025 10 1 3.7463 -0.7414 0.5922 11 6 4.4277 -0.4750 -1.4340 12 7 5.3250 -1.6330 -1.4447 13 6 5.6262 -2.2415 -2.6090 14 8 5.1527 -1.8295 -3.6507 15 6 6.5287 -3.4070 -2.6198 16 6 6.9149 -4.1205 -3.7124 17 8 7.7359 -5.0895 -3.2770 18 6 7.8457 -4.9791 -1.9455 19 6 8.6718 -5.8767 -1.0608 20 7 7.1277 -3.9756 -1.5384 21 7 5.5687 0.2966 0.5869 22 6 5.7372 0.2519 1.9452 23 1 4.9006 0.0147 2.5855 24 6 6.9832 0.5126 2.4989 25 7 8.0026 0.8022 1.7185 26 14 7.2132 0.4510 4.3517 27 1 6.8776 -0.9081 4.8472 28 1 8.6254 0.7655 4.6859 29 1 6.3192 1.4472 4.9948 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.2129 2.3204 -0.0009 34 1 1.3342 4.5114 0.0020 35 1 3.7924 4.6380 -0.0014 36 1 5.1345 2.5751 0.0006 37 1 3.4577 -0.7633 -1.8387 38 1 4.8543 0.3208 -2.0447 39 1 5.7024 -1.9619 -0.6138 40 1 6.6190 -3.9402 -4.7353 41 1 8.0642 -6.7186 -0.7286 42 1 9.5310 -6.2472 -1.6199 43 1 9.0177 -5.3139 -0.1938 44 1 6.3202 0.5100 0.0118 45 1 8.8732 0.9847 2.1055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198685703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:22 Heat of formation + Delta-G solvation = -7.639528 kcal Electronic energy + Delta-G solvation = -29999.955845 eV Core-core repulsion = 25792.256175 eV Total energy + Delta-G solvation = -4207.699671 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.36790 -39.93514 -39.07279 -37.18507 -35.79860 -34.84740 -33.47576 -32.25390 -31.89818 -29.70337 -29.65455 -28.10152 -27.48483 -26.94617 -24.44380 -23.33915 -22.51437 -21.54922 -21.40269 -20.16791 -19.96171 -18.07164 -17.65994 -17.18729 -16.88450 -16.32142 -15.84572 -15.83452 -15.40987 -15.11134 -14.84799 -14.46694 -14.24841 -13.93956 -13.85572 -13.61860 -13.47324 -13.24978 -13.13582 -12.82827 -12.77951 -12.59280 -12.35143 -12.04849 -11.70036 -11.26077 -11.14592 -10.92814 -10.84511 -10.77716 -10.71272 -10.65700 -10.47885 -10.12328 -9.91486 -9.70266 -9.01109 -8.99037 -8.55512 -8.31526 -7.71047 -7.05850 -5.78784 -3.09912 1.17962 1.82838 1.91088 2.12001 2.58883 3.43267 3.46303 3.48708 3.49635 3.57942 3.59319 3.97009 4.26277 4.56978 4.80579 4.97578 5.08206 5.18461 5.21011 5.25153 5.25753 5.29453 5.44973 5.52370 5.54539 5.56612 5.61012 5.64388 5.72101 5.75825 5.88214 5.98609 6.00043 6.15031 6.28448 6.35139 6.47086 6.62148 6.75136 6.87467 6.94658 7.19478 7.36017 7.52081 7.72016 7.77947 8.00917 8.37442 8.53525 9.50275 10.00544 10.37803 11.42563 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007858 B = 0.003961 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3562.335625 B = 7067.288993 C = 9510.098028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.122 3.878 4 C -0.219 4.219 5 C -0.095 4.095 6 C -0.163 4.163 7 C -0.044 4.044 8 C -0.114 4.114 9 C 0.208 3.792 10 H 0.071 0.929 11 C 0.123 3.877 12 N -0.690 5.690 13 C 0.596 3.404 14 O -0.553 6.553 15 C -0.061 4.061 16 C 0.000 4.000 17 O -0.201 6.201 18 C 0.192 3.808 19 C -0.058 4.058 20 N -0.450 5.450 21 N -0.715 5.715 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.005 4.005 25 N -0.928 5.928 26 Si 0.905 3.095 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.139 0.861 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.420 0.580 40 H 0.229 0.771 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.301 -7.448 -7.752 12.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.077 3.923 4 C -0.238 4.238 5 C -0.113 4.113 6 C -0.182 4.182 7 C -0.062 4.062 8 C -0.118 4.118 9 C 0.097 3.903 10 H 0.089 0.911 11 C -0.002 4.002 12 N -0.340 5.340 13 C 0.381 3.619 14 O -0.432 6.432 15 C -0.181 4.181 16 C -0.073 4.073 17 O -0.088 6.088 18 C -0.017 4.017 19 C -0.115 4.115 20 N -0.181 5.181 21 N -0.355 5.355 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.201 4.201 25 N -0.576 5.576 26 Si 0.736 3.264 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.213 1.213 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.157 0.843 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.258 0.742 40 H 0.245 0.755 41 H 0.111 0.889 42 H 0.107 0.893 43 H 0.124 0.876 44 H 0.221 0.779 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.573 -7.188 -7.624 12.928 hybrid contribution 0.254 0.174 0.645 0.714 sum -7.319 -7.014 -6.980 12.308 Atomic orbital electron populations 1.22957 0.79422 1.03323 1.00849 1.86091 1.20444 1.27193 1.88928 1.18945 0.91965 0.83805 0.97631 1.21046 0.99190 0.92616 1.10902 1.20780 0.94709 0.96435 0.99399 1.21064 0.93724 0.98513 1.04873 1.21036 1.01133 0.90382 0.93640 1.20414 0.89958 0.98219 1.03233 1.19238 0.87804 0.91954 0.91326 0.91124 1.21619 0.93275 0.87269 0.98001 1.45799 1.47547 1.30900 1.09776 1.16739 0.79808 0.81094 0.84259 1.90782 1.54468 1.65817 1.32134 1.21888 1.05033 1.01530 0.89636 1.25194 0.93055 0.88137 1.00941 1.84359 1.52898 1.46335 1.25209 1.26364 0.99382 0.96717 0.79282 1.20306 0.97497 0.96915 0.96763 1.70881 1.09638 1.07450 1.30086 1.42457 1.04806 1.83389 1.04891 1.19132 0.94649 1.40523 0.82827 0.91201 1.24696 0.95829 1.02115 0.97508 1.69651 1.00597 1.53708 1.33613 0.86314 0.76643 0.77800 0.85677 1.21234 1.21789 1.21341 0.88749 0.93102 0.93108 0.86380 0.86788 0.86584 0.84313 0.91151 0.91573 0.74192 0.75486 0.88858 0.89345 0.87619 0.77871 0.93436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.31 -4.98 9.63 -19.41 -0.19 -5.17 16 3 C 0.12 2.09 6.66 -39.22 -0.26 1.83 16 4 C -0.22 -3.29 9.04 -39.43 -0.36 -3.64 16 5 C -0.09 -1.41 10.04 -39.60 -0.40 -1.80 16 6 C -0.16 -2.69 10.04 -39.56 -0.40 -3.08 16 7 C -0.04 -0.83 9.32 -39.61 -0.37 -1.20 16 8 C -0.11 -2.18 5.04 -104.47 -0.53 -2.70 16 9 C 0.21 4.17 2.38 -69.09 -0.16 4.00 16 10 H 0.07 1.49 7.63 -51.93 -0.40 1.09 16 11 C 0.12 2.29 5.21 -4.04 -0.02 2.27 16 12 N -0.69 -13.01 5.38 -61.39 -0.33 -13.34 16 13 C 0.60 11.06 7.81 -12.52 -0.10 10.96 16 14 O -0.55 -11.05 16.89 5.26 0.09 -10.97 16 15 C -0.06 -1.00 6.99 -83.02 -0.58 -1.58 16 16 C 0.00 0.00 11.95 29.96 0.36 0.36 16 17 O -0.20 -2.52 10.73 6.50 0.07 -2.45 16 18 C 0.19 2.49 8.30 -13.08 -0.11 2.38 16 19 C -0.06 -0.47 10.51 36.00 0.38 -0.09 16 20 N -0.45 -7.42 11.06 -7.66 -0.08 -7.50 16 21 N -0.71 -16.77 3.30 -54.56 -0.18 -16.95 16 22 C -0.24 -6.34 9.92 -15.05 -0.15 -6.49 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 24 C 0.00 -0.14 5.50 -17.43 -0.10 -0.23 16 25 N -0.93 -26.83 13.06 55.49 0.72 -26.10 16 26 Si 0.90 21.99 29.55 -169.99 -5.02 16.96 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.51 7.66 -51.93 -0.40 0.12 16 32 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 33 H 0.12 1.44 6.30 -52.49 -0.33 1.11 16 34 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 36 H 0.14 2.91 7.26 -52.49 -0.38 2.53 16 37 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 1.28 8.14 -51.92 -0.42 0.85 16 39 H 0.42 8.40 7.87 -40.82 -0.32 8.08 16 40 H 0.23 2.22 8.06 -52.49 -0.42 1.80 16 41 H 0.09 0.60 8.14 -51.92 -0.42 0.18 16 42 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.39 9.78 7.80 -40.82 -0.32 9.46 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 390.79 15.07 5.89 5.89 Total: -1.00 -32.68 390.79 -6.73 -39.41 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -5.89 Total: 17.92 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -1.80 Total: 2.30 kcal Atomic # 7 Polarization: -64.03 SS G_CDS: 0.13 Total: -63.90 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.03 Total: -18.58 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.68 -6.73 -39.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198685703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.767 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds