Wall clock time and date at job start Wed Apr 1 2020 04:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35896 * 117.00251 * 2 1 4 4 C 1.38753 * 120.05684 * 359.95691 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05457 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.02482 * 180.02562 * 8 7 6 10 10 H 1.09005 * 109.46613 * 145.00276 * 9 8 7 11 11 C 1.52997 * 109.47072 * 264.99471 * 9 8 7 12 12 N 1.46500 * 109.47006 * 175.00174 * 11 9 8 13 13 C 1.34782 * 119.99905 * 180.02562 * 12 11 9 14 14 O 1.21615 * 119.99956 * 359.97438 * 13 12 11 15 15 C 1.47415 * 119.99998 * 180.02562 * 13 12 11 16 16 C 1.36092 * 126.44886 * 179.71497 * 15 13 12 17 17 O 1.34257 * 106.94955 * 179.90315 * 16 15 13 18 18 C 1.34052 * 108.22738 * 0.35592 * 17 16 15 19 19 C 1.50696 * 125.37788 * 179.80643 * 18 17 16 20 20 N 1.29931 * 109.24091 * 359.77841 * 18 17 16 21 21 N 1.46490 * 109.47427 * 25.00087 * 9 8 7 22 22 C 1.36946 * 120.00091 * 84.99917 * 21 9 8 23 23 H 1.07993 * 119.99950 * 359.97438 * 22 21 9 24 24 C 1.38818 * 119.99882 * 180.02562 * 22 21 9 25 25 N 1.31618 * 119.99779 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99853 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47169 * 59.99980 * 26 24 22 28 28 H 1.48495 * 109.47318 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.46806 * 299.99879 * 26 24 22 30 30 H 1.08993 * 109.47446 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47023 * 300.00310 * 1 2 3 32 32 H 1.09001 * 109.47048 * 59.99886 * 1 2 3 33 33 H 1.08002 * 120.02760 * 0.04235 * 4 3 2 34 34 H 1.07997 * 119.97891 * 180.25368 * 5 4 3 35 35 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 36 36 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 37 37 H 1.08992 * 109.47467 * 295.00629 * 11 9 8 38 38 H 1.09009 * 109.46662 * 55.00615 * 11 9 8 39 39 H 0.96999 * 120.00114 * 0.02562 * 12 11 9 40 40 H 1.08002 * 126.52327 * 0.02673 * 16 15 13 41 41 H 1.09008 * 109.47272 * 269.96325 * 19 18 17 42 42 H 1.09002 * 109.47686 * 29.96288 * 19 18 17 43 43 H 1.08997 * 109.47172 * 149.96803 * 19 18 17 44 44 H 0.96999 * 120.00485 * 264.99635 * 21 9 8 45 45 H 0.97000 * 119.99459 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0009 5 6 1.9210 3.6048 -0.0014 6 6 3.3021 3.6757 -0.0005 7 6 4.0561 2.5170 0.0004 8 6 3.4312 1.2847 0.0009 9 6 4.2538 0.0221 0.0025 10 1 3.7463 -0.7414 0.5922 11 6 4.4277 -0.4750 -1.4340 12 7 5.3250 -1.6330 -1.4447 13 6 5.6262 -2.2415 -2.6090 14 8 5.1527 -1.8295 -3.6507 15 6 6.5287 -3.4070 -2.6198 16 6 6.9149 -4.1205 -3.7124 17 8 7.7359 -5.0895 -3.2770 18 6 7.8457 -4.9791 -1.9455 19 6 8.6718 -5.8767 -1.0608 20 7 7.1277 -3.9756 -1.5384 21 7 5.5687 0.2966 0.5869 22 6 5.7372 0.2519 1.9452 23 1 4.9006 0.0147 2.5855 24 6 6.9832 0.5126 2.4989 25 7 8.0026 0.8022 1.7185 26 14 7.2132 0.4510 4.3517 27 1 6.8776 -0.9081 4.8472 28 1 8.6254 0.7655 4.6859 29 1 6.3192 1.4472 4.9948 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 0.2129 2.3204 -0.0009 34 1 1.3342 4.5114 0.0020 35 1 3.7924 4.6380 -0.0014 36 1 5.1345 2.5751 0.0006 37 1 3.4577 -0.7633 -1.8387 38 1 4.8543 0.3208 -2.0447 39 1 5.7024 -1.9619 -0.6138 40 1 6.6190 -3.9402 -4.7353 41 1 8.0642 -6.7186 -0.7286 42 1 9.5310 -6.2472 -1.6199 43 1 9.0177 -5.3139 -0.1938 44 1 6.3202 0.5100 0.0118 45 1 8.8732 0.9847 2.1055 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198685703.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:21 Heat of formation + Delta-G solvation = -32.082870 kcal Electronic energy + Delta-G solvation = -30001.015788 eV Core-core repulsion = 25792.256175 eV Total energy + Delta-G solvation = -4208.759614 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.44111 -41.23974 -40.51141 -38.50078 -37.33474 -35.98436 -35.21176 -33.69973 -33.10220 -31.34328 -30.94703 -29.42008 -28.64386 -27.97097 -26.03182 -25.05204 -23.84323 -22.81804 -22.46362 -21.64047 -21.34365 -19.48999 -19.16497 -18.71285 -17.95146 -17.49000 -17.33853 -17.18022 -16.59574 -16.48173 -16.28165 -16.10647 -15.60355 -15.23722 -15.17988 -14.95156 -14.85705 -14.57842 -14.31337 -14.15414 -13.89503 -13.80892 -13.48252 -13.28064 -12.90819 -12.82539 -12.72984 -12.54627 -12.32743 -12.26853 -12.07869 -11.92055 -11.85491 -11.83855 -11.62395 -11.37432 -10.96778 -10.24853 -9.93541 -9.67477 -9.08501 -8.95385 -7.90347 -5.20447 0.06140 0.51406 0.60939 0.96638 1.48322 1.49929 1.55816 1.59324 2.09831 2.22014 2.50054 2.57164 2.91040 2.95029 3.42539 3.69853 3.76993 3.80108 3.97118 4.08333 4.15781 4.28175 4.38551 4.39640 4.42129 4.45849 4.53513 4.58405 4.62345 4.66759 4.71843 4.73772 4.77055 4.87222 4.91196 5.03003 5.20577 5.24000 5.33807 5.45784 5.54873 5.63465 5.83260 6.02274 6.28653 6.31755 6.58547 6.60997 7.03803 7.36688 8.02951 8.31812 9.31465 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007858 B = 0.003961 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3562.335625 B = 7067.288993 C = 9510.098028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.117 3.883 4 C -0.213 4.213 5 C -0.084 4.084 6 C -0.171 4.171 7 C -0.066 4.066 8 C -0.141 4.141 9 C 0.218 3.782 10 H 0.057 0.943 11 C 0.136 3.864 12 N -0.695 5.695 13 C 0.595 3.405 14 O -0.573 6.573 15 C -0.103 4.103 16 C 0.029 3.971 17 O -0.193 6.193 18 C 0.200 3.800 19 C -0.057 4.057 20 N -0.496 5.496 21 N -0.717 5.717 22 C -0.232 4.232 23 H 0.067 0.933 24 C -0.060 4.060 25 N -0.961 5.961 26 Si 0.964 3.036 27 H -0.279 1.279 28 H -0.296 1.296 29 H -0.284 1.284 30 H 0.113 0.887 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.054 0.946 39 H 0.413 0.587 40 H 0.261 0.739 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.375 0.625 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.169 -8.041 -7.909 14.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.071 3.929 4 C -0.231 4.231 5 C -0.102 4.102 6 C -0.189 4.189 7 C -0.085 4.085 8 C -0.145 4.145 9 C 0.108 3.892 10 H 0.075 0.925 11 C 0.012 3.988 12 N -0.344 5.344 13 C 0.382 3.618 14 O -0.454 6.454 15 C -0.222 4.222 16 C -0.045 4.045 17 O -0.079 6.079 18 C -0.010 4.010 19 C -0.114 4.114 20 N -0.226 5.226 21 N -0.357 5.357 22 C -0.363 4.363 23 H 0.085 0.915 24 C -0.253 4.253 25 N -0.611 5.611 26 Si 0.793 3.207 27 H -0.205 1.205 28 H -0.223 1.223 29 H -0.210 1.210 30 H 0.132 0.868 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.151 0.849 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.250 0.750 40 H 0.276 0.724 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.118 0.882 44 H 0.208 0.792 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.500 -7.793 -7.782 14.544 hybrid contribution 0.709 0.298 0.623 0.990 sum -8.791 -7.495 -7.158 13.590 Atomic orbital electron populations 1.23310 0.76754 1.05220 1.02218 1.86064 1.23234 1.26855 1.88741 1.18998 0.91373 0.85215 0.97310 1.21449 1.00892 0.91687 1.09071 1.21220 0.94024 0.97972 0.96992 1.21282 0.94829 0.98122 1.04674 1.20876 0.99893 0.91827 0.95897 1.20183 0.91239 0.97191 1.05913 1.19163 0.86188 0.92420 0.91391 0.92475 1.21451 0.93409 0.86963 0.96988 1.45821 1.47743 1.30998 1.09805 1.17049 0.79678 0.81462 0.83622 1.90746 1.55505 1.66739 1.32452 1.21724 1.06903 1.02348 0.91215 1.25740 0.90965 0.86487 1.01293 1.84413 1.52504 1.45877 1.25110 1.27276 0.98127 0.95880 0.79682 1.20599 0.98183 0.96562 0.96067 1.70834 1.11492 1.09315 1.30972 1.42423 1.05866 1.83488 1.03888 1.19342 0.94337 1.38606 0.84045 0.91467 1.25354 0.95760 1.03041 1.01166 1.69802 1.00686 1.55677 1.34954 0.85368 0.76074 0.77882 0.81331 1.20547 1.22254 1.21032 0.86844 0.91841 0.91420 0.82846 0.82851 0.84947 0.87530 0.90501 0.92731 0.74987 0.72353 0.86589 0.86465 0.88150 0.79248 0.94144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -10.33 9.63 -92.39 -0.89 -11.22 16 3 C 0.12 3.91 6.66 22.51 0.15 4.06 16 4 C -0.21 -5.76 9.04 22.37 0.20 -5.56 16 5 C -0.08 -2.23 10.04 22.26 0.22 -2.01 16 6 C -0.17 -5.48 10.04 22.28 0.22 -5.26 16 7 C -0.07 -2.63 9.32 22.25 0.21 -2.42 16 8 C -0.14 -5.56 5.04 -19.77 -0.10 -5.66 16 9 C 0.22 9.21 2.38 44.25 0.11 9.31 16 10 H 0.06 2.54 7.63 -2.38 -0.02 2.52 16 11 C 0.14 5.38 5.21 86.38 0.45 5.83 16 12 N -0.69 -27.75 5.38 -466.37 -2.51 -30.26 16 13 C 0.60 22.97 7.81 86.66 0.68 23.64 16 14 O -0.57 -23.52 16.89 -4.08 -0.07 -23.59 16 15 C -0.10 -3.47 6.99 40.41 0.28 -3.18 16 16 C 0.03 0.74 11.95 67.32 0.80 1.54 16 17 O -0.19 -4.49 10.73 0.36 0.00 -4.48 16 18 C 0.20 5.01 8.30 88.39 0.73 5.74 16 19 C -0.06 -0.83 10.51 71.23 0.75 -0.08 16 20 N -0.50 -16.63 11.06 -293.04 -3.24 -19.87 16 21 N -0.72 -35.62 3.30 -326.52 -1.08 -36.70 16 22 C -0.23 -12.67 9.92 84.03 0.83 -11.84 16 23 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 24 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 25 N -0.96 -57.78 13.06 21.65 0.28 -57.50 16 26 Si 0.96 46.19 29.55 68.60 2.03 48.22 16 27 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 28 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 29 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 30 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 1.07 7.66 -2.38 -0.02 1.06 16 32 H 0.07 1.09 7.66 -2.39 -0.02 1.07 16 33 H 0.15 3.03 6.30 -2.91 -0.02 3.01 16 34 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 35 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 36 H 0.11 4.83 7.26 -2.91 -0.02 4.81 16 37 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 38 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 39 H 0.41 17.67 7.87 -92.71 -0.73 16.94 16 40 H 0.26 4.52 8.06 -2.91 -0.02 4.50 16 41 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 42 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.10 1.61 8.14 -2.39 -0.02 1.60 16 44 H 0.37 20.30 7.80 -92.71 -0.72 19.58 16 45 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -74.21 390.79 1.24 -72.97 By element: Atomic # 1 Polarization: 50.17 SS G_CDS: -0.41 Total: 49.76 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 7.12 Total: 12.67 kcal Atomic # 7 Polarization: -137.78 SS G_CDS: -6.54 Total: -144.33 kcal Atomic # 8 Polarization: -38.34 SS G_CDS: -0.96 Total: -39.29 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -74.21 1.24 -72.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198685703.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.889 kcal (2) G-P(sol) polarization free energy of solvation -74.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds