Wall clock time and date at job start Wed Apr 1 2020 04:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 117.00211 * 2 1 4 4 C 1.38752 * 120.05456 * 0.02712 * 3 2 1 5 5 C 1.38126 * 119.94548 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05090 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.11634 * 359.74786 * 6 5 4 8 8 C 1.38162 * 120.05188 * 0.50359 * 7 6 5 9 9 C 1.50704 * 120.02777 * 179.77307 * 8 7 6 10 10 H 1.09003 * 109.46889 * 219.72480 * 9 8 7 11 11 C 1.52996 * 109.47095 * 99.72380 * 9 8 7 12 12 N 1.46499 * 109.46762 * 184.99862 * 11 9 8 13 13 C 1.34782 * 119.99886 * 180.02562 * 12 11 9 14 14 O 1.21610 * 119.99903 * 0.02562 * 13 12 11 15 15 C 1.47419 * 119.99976 * 180.02562 * 13 12 11 16 16 C 1.36092 * 126.44406 * 179.97438 * 15 13 12 17 17 O 1.34261 * 106.94715 * 180.02562 * 16 15 13 18 18 C 1.34047 * 108.22714 * 0.02562 * 17 16 15 19 19 C 1.50695 * 125.38014 * 180.02562 * 18 17 16 20 20 N 1.29934 * 109.24161 * 359.97438 * 18 17 16 21 21 N 1.46498 * 109.46736 * 339.72214 * 9 8 7 22 22 C 1.36939 * 120.00267 * 274.99643 * 21 9 8 23 23 H 1.07994 * 119.99832 * 0.02562 * 22 21 9 24 24 C 1.38810 * 120.00064 * 180.02562 * 22 21 9 25 25 N 1.31625 * 119.99886 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00088 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46900 * 90.00404 * 26 24 22 28 28 H 1.48499 * 109.46992 * 209.99915 * 26 24 22 29 29 H 1.48499 * 109.47003 * 330.00370 * 26 24 22 30 30 H 1.08997 * 109.47130 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47260 * 299.99990 * 1 2 3 32 32 H 1.09005 * 109.47303 * 59.99643 * 1 2 3 33 33 H 1.08007 * 120.02865 * 359.95017 * 4 3 2 34 34 H 1.07995 * 119.97280 * 179.97438 * 5 4 3 35 35 H 1.07999 * 119.94131 * 179.97438 * 6 5 4 36 36 H 1.07998 * 119.97332 * 180.25532 * 7 6 5 37 37 H 1.09004 * 109.47205 * 65.00465 * 11 9 8 38 38 H 1.09000 * 109.47356 * 305.00064 * 11 9 8 39 39 H 0.96999 * 120.00590 * 0.02562 * 12 11 9 40 40 H 1.07995 * 126.53297 * 0.02562 * 16 15 13 41 41 H 1.08999 * 109.47541 * 269.97463 * 19 18 17 42 42 H 1.09000 * 109.47521 * 29.97537 * 19 18 17 43 43 H 1.08998 * 109.47339 * 149.97477 * 19 18 17 44 44 H 0.97000 * 119.99482 * 95.00434 * 21 9 8 45 45 H 0.96995 * 119.99866 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0006 5 6 1.9210 3.6048 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0560 2.5170 0.0068 8 6 3.4312 1.2848 0.0011 9 6 4.2538 0.0221 0.0016 10 1 3.7927 -0.7122 -0.6590 11 6 4.3217 -0.5417 1.4223 12 7 5.2177 -1.7005 1.4454 13 6 5.4321 -2.3637 2.5990 14 8 4.8814 -2.0004 3.6206 15 6 6.3341 -3.5295 2.6224 16 6 6.6435 -4.2907 3.7073 17 8 7.4942 -5.2412 3.2886 18 6 7.7036 -5.0680 1.9760 19 6 8.5959 -5.9237 1.1143 20 7 7.0148 -4.0463 1.5637 21 7 5.6079 0.3213 -0.4704 22 6 5.8767 0.3397 -1.8130 23 1 5.0902 0.1339 -2.5240 24 6 7.1599 0.6227 -2.2602 25 7 8.1186 0.8730 -1.3936 26 14 7.5264 0.6485 -4.0917 27 1 7.3075 2.0186 -4.6211 28 1 8.9385 0.2495 -4.3196 29 1 6.6244 -0.3021 -4.7904 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 0.2128 2.3203 0.0002 34 1 1.3341 4.5113 0.0011 35 1 3.7923 4.6379 0.0016 36 1 5.1345 2.5751 0.0114 37 1 3.3247 -0.8470 1.7402 38 1 4.7004 0.2240 2.0993 39 1 5.6567 -1.9906 0.6305 40 1 6.2750 -4.1559 4.7134 41 1 9.6050 -5.5116 1.1144 42 1 8.6182 -6.9391 1.5102 43 1 8.2101 -5.9396 0.0951 44 1 6.3142 0.5064 0.1682 45 1 9.0152 1.0711 -1.7061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198685704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:26 Heat of formation + Delta-G solvation = -7.427241 kcal Electronic energy + Delta-G solvation = -30016.030379 eV Core-core repulsion = 25808.339914 eV Total energy + Delta-G solvation = -4207.690465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.36779 -39.93912 -39.06823 -37.18433 -35.79975 -34.84715 -33.48161 -32.25421 -31.89657 -29.71269 -29.64099 -28.09865 -27.47810 -26.95506 -24.44441 -23.34554 -22.49679 -21.53372 -21.40015 -20.16975 -19.96861 -18.07420 -17.65010 -17.19799 -16.88336 -16.32173 -15.85726 -15.82216 -15.40919 -15.10726 -14.84162 -14.46264 -14.25119 -13.93193 -13.85076 -13.61328 -13.47662 -13.24404 -13.14568 -12.82192 -12.78551 -12.60209 -12.34898 -12.04906 -11.68786 -11.24731 -11.13984 -10.94362 -10.84655 -10.76876 -10.72972 -10.67067 -10.46622 -10.09758 -9.91027 -9.70683 -9.01789 -8.99025 -8.54998 -8.30718 -7.70731 -7.06565 -5.79486 -3.10775 1.18078 1.83223 1.91397 2.12209 2.58864 3.42352 3.46344 3.49174 3.49908 3.57948 3.59498 3.97010 4.26781 4.56431 4.80457 4.97659 5.08141 5.18671 5.20694 5.25027 5.27239 5.29471 5.44678 5.52182 5.54825 5.56314 5.61629 5.64301 5.72542 5.75574 5.88692 5.98936 6.00393 6.15045 6.29597 6.36030 6.48282 6.63136 6.75422 6.87742 6.94903 7.20554 7.37970 7.52169 7.71998 7.77958 8.01175 8.36732 8.53838 9.49650 9.99932 10.37249 11.41860 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007810 B = 0.004003 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3584.356171 B = 6993.199086 C = 9544.718995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.121 3.879 4 C -0.219 4.219 5 C -0.095 4.095 6 C -0.164 4.164 7 C -0.043 4.043 8 C -0.115 4.115 9 C 0.209 3.791 10 H 0.070 0.930 11 C 0.123 3.877 12 N -0.690 5.690 13 C 0.596 3.404 14 O -0.553 6.553 15 C -0.060 4.060 16 C 0.000 4.000 17 O -0.201 6.201 18 C 0.192 3.808 19 C -0.057 4.057 20 N -0.450 5.450 21 N -0.715 5.715 22 C -0.240 4.240 23 H 0.071 0.929 24 C -0.005 4.005 25 N -0.928 5.928 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.420 0.580 40 H 0.229 0.771 41 H 0.095 0.905 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.387 0.613 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.842 -7.803 6.957 13.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.076 3.924 4 C -0.238 4.238 5 C -0.113 4.113 6 C -0.182 4.182 7 C -0.061 4.061 8 C -0.120 4.120 9 C 0.097 3.903 10 H 0.088 0.912 11 C -0.002 4.002 12 N -0.340 5.340 13 C 0.381 3.619 14 O -0.432 6.432 15 C -0.181 4.181 16 C -0.073 4.073 17 O -0.088 6.088 18 C -0.017 4.017 19 C -0.114 4.114 20 N -0.181 5.181 21 N -0.356 5.356 22 C -0.371 4.371 23 H 0.089 0.911 24 C -0.202 4.202 25 N -0.575 5.575 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.160 0.840 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.258 0.742 40 H 0.245 0.755 41 H 0.113 0.887 42 H 0.106 0.894 43 H 0.122 0.878 44 H 0.221 0.779 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.114 -7.549 6.824 13.015 hybrid contribution 0.314 0.219 -0.582 0.697 sum -7.799 -7.330 6.241 12.390 Atomic orbital electron populations 1.22956 0.79426 1.03318 1.00851 1.86092 1.20445 1.27200 1.88932 1.18953 0.91963 0.83808 0.97676 1.21044 0.99178 0.92614 1.10968 1.20783 0.94722 0.96428 0.99395 1.21077 0.93703 0.98556 1.04878 1.21101 1.01356 0.90288 0.93406 1.20417 0.89906 0.98267 1.03387 1.19229 0.87188 0.91583 0.92257 0.91189 1.21617 0.93379 0.87046 0.98116 1.45799 1.46729 1.30027 1.11465 1.16739 0.80143 0.81003 0.84022 1.90780 1.51144 1.68046 1.33232 1.21889 1.04424 1.01504 0.90261 1.25194 0.92807 0.88365 1.00974 1.84359 1.51117 1.46651 1.26673 1.26363 0.99579 0.96031 0.79773 1.20299 0.96893 0.96882 0.97370 1.70878 1.08844 1.08352 1.29994 1.42470 1.04188 1.83652 1.05302 1.19176 0.94158 1.40667 0.83101 0.91131 1.24700 0.95934 1.02181 0.97361 1.69663 1.01507 1.54017 1.32341 0.86237 0.77179 0.77633 0.85400 1.21795 1.21851 1.20754 0.88755 0.93092 0.93118 0.86389 0.86807 0.86588 0.84006 0.91036 0.91620 0.74208 0.75490 0.88679 0.89412 0.87765 0.77855 0.93481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.31 -4.95 9.68 -19.42 -0.19 -5.14 16 3 C 0.12 2.08 6.66 -39.22 -0.26 1.81 16 4 C -0.22 -3.29 9.04 -39.43 -0.36 -3.64 16 5 C -0.10 -1.41 10.04 -39.61 -0.40 -1.80 16 6 C -0.16 -2.70 10.04 -39.56 -0.40 -3.10 16 7 C -0.04 -0.83 9.32 -39.61 -0.37 -1.20 16 8 C -0.12 -2.20 5.06 -104.47 -0.53 -2.73 16 9 C 0.21 4.18 2.32 -69.08 -0.16 4.02 16 10 H 0.07 1.48 7.79 -51.93 -0.40 1.07 16 11 C 0.12 2.30 5.21 -4.04 -0.02 2.27 16 12 N -0.69 -13.02 5.38 -61.38 -0.33 -13.35 16 13 C 0.60 11.08 7.81 -12.52 -0.10 10.98 16 14 O -0.55 -11.08 16.89 5.27 0.09 -10.99 16 15 C -0.06 -1.00 6.99 -83.03 -0.58 -1.58 16 16 C 0.00 0.00 11.95 29.96 0.36 0.36 16 17 O -0.20 -2.52 10.73 6.51 0.07 -2.45 16 18 C 0.19 2.49 8.30 -13.08 -0.11 2.38 16 19 C -0.06 -0.47 10.51 36.00 0.38 -0.09 16 20 N -0.45 -7.42 11.06 -7.66 -0.08 -7.50 16 21 N -0.72 -16.74 3.17 -54.55 -0.17 -16.92 16 22 C -0.24 -6.30 9.92 -15.06 -0.15 -6.45 16 23 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 24 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 25 N -0.93 -26.76 13.06 55.49 0.72 -26.03 16 26 Si 0.90 21.92 29.55 -169.99 -5.02 16.90 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 32 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 33 H 0.12 1.44 6.30 -52.48 -0.33 1.11 16 34 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.14 3.02 7.14 -52.49 -0.37 2.65 16 37 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 38 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.42 8.39 7.87 -40.82 -0.32 8.07 16 40 H 0.23 2.22 8.06 -52.49 -0.42 1.80 16 41 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.39 9.78 7.80 -40.82 -0.32 9.46 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 390.69 15.07 5.89 5.89 Total: -1.00 -32.54 390.69 -6.72 -39.26 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -5.89 Total: 18.02 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: -1.80 Total: 2.31 kcal Atomic # 7 Polarization: -63.94 SS G_CDS: 0.14 Total: -63.80 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.03 Total: -18.58 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.54 -6.72 -39.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198685704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.832 kcal (2) G-P(sol) polarization free energy of solvation -32.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds