Wall clock time and date at job start Wed Apr 1 2020 04:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 117.00211 * 2 1 4 4 C 1.38752 * 120.05456 * 0.02712 * 3 2 1 5 5 C 1.38126 * 119.94548 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05090 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.11634 * 359.74786 * 6 5 4 8 8 C 1.38162 * 120.05188 * 0.50359 * 7 6 5 9 9 C 1.50704 * 120.02777 * 179.77307 * 8 7 6 10 10 H 1.09003 * 109.46889 * 219.72480 * 9 8 7 11 11 C 1.52996 * 109.47095 * 99.72380 * 9 8 7 12 12 N 1.46499 * 109.46762 * 184.99862 * 11 9 8 13 13 C 1.34782 * 119.99886 * 180.02562 * 12 11 9 14 14 O 1.21610 * 119.99903 * 0.02562 * 13 12 11 15 15 C 1.47419 * 119.99976 * 180.02562 * 13 12 11 16 16 C 1.36092 * 126.44406 * 179.97438 * 15 13 12 17 17 O 1.34261 * 106.94715 * 180.02562 * 16 15 13 18 18 C 1.34047 * 108.22714 * 0.02562 * 17 16 15 19 19 C 1.50695 * 125.38014 * 180.02562 * 18 17 16 20 20 N 1.29934 * 109.24161 * 359.97438 * 18 17 16 21 21 N 1.46498 * 109.46736 * 339.72214 * 9 8 7 22 22 C 1.36939 * 120.00267 * 274.99643 * 21 9 8 23 23 H 1.07994 * 119.99832 * 0.02562 * 22 21 9 24 24 C 1.38810 * 120.00064 * 180.02562 * 22 21 9 25 25 N 1.31625 * 119.99886 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00088 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46900 * 90.00404 * 26 24 22 28 28 H 1.48499 * 109.46992 * 209.99915 * 26 24 22 29 29 H 1.48499 * 109.47003 * 330.00370 * 26 24 22 30 30 H 1.08997 * 109.47130 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47260 * 299.99990 * 1 2 3 32 32 H 1.09005 * 109.47303 * 59.99643 * 1 2 3 33 33 H 1.08007 * 120.02865 * 359.95017 * 4 3 2 34 34 H 1.07995 * 119.97280 * 179.97438 * 5 4 3 35 35 H 1.07999 * 119.94131 * 179.97438 * 6 5 4 36 36 H 1.07998 * 119.97332 * 180.25532 * 7 6 5 37 37 H 1.09004 * 109.47205 * 65.00465 * 11 9 8 38 38 H 1.09000 * 109.47356 * 305.00064 * 11 9 8 39 39 H 0.96999 * 120.00590 * 0.02562 * 12 11 9 40 40 H 1.07995 * 126.53297 * 0.02562 * 16 15 13 41 41 H 1.08999 * 109.47541 * 269.97463 * 19 18 17 42 42 H 1.09000 * 109.47521 * 29.97537 * 19 18 17 43 43 H 1.08998 * 109.47339 * 149.97477 * 19 18 17 44 44 H 0.97000 * 119.99482 * 95.00434 * 21 9 8 45 45 H 0.96995 * 119.99866 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0006 5 6 1.9210 3.6048 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0560 2.5170 0.0068 8 6 3.4312 1.2848 0.0011 9 6 4.2538 0.0221 0.0016 10 1 3.7927 -0.7122 -0.6590 11 6 4.3217 -0.5417 1.4223 12 7 5.2177 -1.7005 1.4454 13 6 5.4321 -2.3637 2.5990 14 8 4.8814 -2.0004 3.6206 15 6 6.3341 -3.5295 2.6224 16 6 6.6435 -4.2907 3.7073 17 8 7.4942 -5.2412 3.2886 18 6 7.7036 -5.0680 1.9760 19 6 8.5959 -5.9237 1.1143 20 7 7.0148 -4.0463 1.5637 21 7 5.6079 0.3213 -0.4704 22 6 5.8767 0.3397 -1.8130 23 1 5.0902 0.1339 -2.5240 24 6 7.1599 0.6227 -2.2602 25 7 8.1186 0.8730 -1.3936 26 14 7.5264 0.6485 -4.0917 27 1 7.3075 2.0186 -4.6211 28 1 8.9385 0.2495 -4.3196 29 1 6.6244 -0.3021 -4.7904 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5139 -0.8900 33 1 0.2128 2.3203 0.0002 34 1 1.3341 4.5113 0.0011 35 1 3.7923 4.6379 0.0016 36 1 5.1345 2.5751 0.0114 37 1 3.3247 -0.8470 1.7402 38 1 4.7004 0.2240 2.0993 39 1 5.6567 -1.9906 0.6305 40 1 6.2750 -4.1559 4.7134 41 1 9.6050 -5.5116 1.1144 42 1 8.6182 -6.9391 1.5102 43 1 8.2101 -5.9396 0.0951 44 1 6.3142 0.5064 0.1682 45 1 9.0152 1.0711 -1.7061 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198685704.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:25 Heat of formation + Delta-G solvation = -31.716700 kcal Electronic energy + Delta-G solvation = -30017.083649 eV Core-core repulsion = 25808.339914 eV Total energy + Delta-G solvation = -4208.743735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.44152 -41.24413 -40.50815 -38.50033 -37.33584 -35.98483 -35.21571 -33.69754 -33.10221 -31.34155 -30.94486 -29.41484 -28.64177 -27.97389 -26.03252 -25.05392 -23.82780 -22.80359 -22.46222 -21.64910 -21.34637 -19.49491 -19.15848 -18.71658 -17.95156 -17.48946 -17.34757 -17.16276 -16.60488 -16.47583 -16.27637 -16.10138 -15.60290 -15.23781 -15.16532 -14.95122 -14.85721 -14.58205 -14.32348 -14.15478 -13.90194 -13.79671 -13.49191 -13.27054 -12.91289 -12.83819 -12.72466 -12.52184 -12.32727 -12.27567 -12.06002 -11.91491 -11.85192 -11.83994 -11.61434 -11.37170 -10.97987 -10.24712 -9.93493 -9.66619 -9.08280 -8.95800 -7.90523 -5.20752 0.06146 0.51716 0.61103 0.96664 1.48516 1.48943 1.57210 1.59328 2.09875 2.22161 2.50135 2.57062 2.91179 2.95233 3.42517 3.70074 3.77182 3.80111 3.96981 4.08534 4.15606 4.28429 4.38796 4.40246 4.42338 4.46143 4.53646 4.58541 4.63175 4.66474 4.72302 4.74087 4.77464 4.87302 4.92123 5.03508 5.21128 5.23978 5.33991 5.45640 5.55234 5.63880 5.84167 6.03100 6.28704 6.31826 6.58645 6.61070 7.03947 7.36602 8.02637 8.31559 9.31466 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007810 B = 0.004003 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3584.356171 B = 6993.199086 C = 9544.718995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.117 3.883 4 C -0.213 4.213 5 C -0.084 4.084 6 C -0.171 4.171 7 C -0.066 4.066 8 C -0.142 4.142 9 C 0.219 3.781 10 H 0.057 0.943 11 C 0.137 3.863 12 N -0.695 5.695 13 C 0.595 3.405 14 O -0.573 6.573 15 C -0.103 4.103 16 C 0.029 3.971 17 O -0.193 6.193 18 C 0.200 3.800 19 C -0.057 4.057 20 N -0.495 5.495 21 N -0.717 5.717 22 C -0.230 4.230 23 H 0.068 0.932 24 C -0.060 4.060 25 N -0.961 5.961 26 Si 0.963 3.037 27 H -0.291 1.291 28 H -0.296 1.296 29 H -0.273 1.273 30 H 0.113 0.887 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.413 0.587 40 H 0.261 0.739 41 H 0.108 0.892 42 H 0.120 0.880 43 H 0.105 0.895 44 H 0.375 0.625 45 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.748 -8.404 7.041 14.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.071 3.929 4 C -0.231 4.231 5 C -0.102 4.102 6 C -0.190 4.190 7 C -0.085 4.085 8 C -0.146 4.146 9 C 0.109 3.891 10 H 0.075 0.925 11 C 0.012 3.988 12 N -0.344 5.344 13 C 0.382 3.618 14 O -0.454 6.454 15 C -0.222 4.222 16 C -0.045 4.045 17 O -0.079 6.079 18 C -0.010 4.010 19 C -0.114 4.114 20 N -0.226 5.226 21 N -0.357 5.357 22 C -0.362 4.362 23 H 0.086 0.914 24 C -0.253 4.253 25 N -0.611 5.611 26 Si 0.793 3.207 27 H -0.219 1.219 28 H -0.223 1.223 29 H -0.198 1.198 30 H 0.131 0.869 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.172 0.828 34 H 0.171 0.829 35 H 0.150 0.850 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.250 0.750 40 H 0.276 0.724 41 H 0.126 0.874 42 H 0.138 0.862 43 H 0.123 0.877 44 H 0.208 0.792 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.079 -8.162 6.903 14.692 hybrid contribution 0.778 0.345 -0.544 1.010 sum -9.301 -7.817 6.359 13.713 Atomic orbital electron populations 1.23310 0.76759 1.05215 1.02229 1.86066 1.23228 1.26831 1.88730 1.18993 0.91334 0.85223 0.97302 1.21449 1.00892 0.91671 1.09095 1.21218 0.93996 0.97986 0.96977 1.21282 0.94834 0.98114 1.04734 1.20913 1.00010 0.91787 0.95763 1.20181 0.91213 0.97199 1.06046 1.19157 0.85519 0.92095 0.92338 0.92527 1.21444 0.93544 0.86735 0.97045 1.45821 1.46868 1.30153 1.11524 1.17049 0.80030 0.81365 0.83371 1.90745 1.52199 1.68942 1.33564 1.21723 1.06219 1.02332 0.91907 1.25740 0.90868 0.86681 1.01206 1.84412 1.50729 1.46181 1.26584 1.27275 0.98501 0.95120 0.80074 1.20598 0.96317 0.97830 0.96667 1.70831 1.10599 1.10233 1.30932 1.42434 1.05349 1.83754 1.04163 1.19373 0.93887 1.38686 0.84226 0.91413 1.25352 0.95974 1.03126 1.00881 1.69811 1.01503 1.55999 1.33821 0.85295 0.76654 0.77460 0.81255 1.21876 1.22262 1.19809 0.86857 0.91461 0.91784 0.82826 0.82866 0.85035 0.87421 0.90405 0.92848 0.74989 0.72360 0.87400 0.86154 0.87657 0.79245 0.94155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.81 113.37 1.11 1.48 16 2 O -0.33 -10.22 9.68 -92.41 -0.89 -11.12 16 3 C 0.12 3.90 6.66 22.51 0.15 4.05 16 4 C -0.21 -5.73 9.04 22.37 0.20 -5.53 16 5 C -0.08 -2.23 10.04 22.25 0.22 -2.00 16 6 C -0.17 -5.53 10.04 22.28 0.22 -5.30 16 7 C -0.07 -2.64 9.32 22.25 0.21 -2.43 16 8 C -0.14 -5.60 5.06 -19.77 -0.10 -5.70 16 9 C 0.22 9.22 2.32 44.25 0.10 9.32 16 10 H 0.06 2.51 7.79 -2.39 -0.02 2.49 16 11 C 0.14 5.40 5.21 86.38 0.45 5.85 16 12 N -0.69 -27.76 5.38 -466.37 -2.51 -30.27 16 13 C 0.60 22.98 7.81 86.66 0.68 23.65 16 14 O -0.57 -23.54 16.89 -4.06 -0.07 -23.61 16 15 C -0.10 -3.46 6.99 40.41 0.28 -3.18 16 16 C 0.03 0.74 11.95 67.32 0.80 1.54 16 17 O -0.19 -4.49 10.73 0.37 0.00 -4.48 16 18 C 0.20 5.00 8.30 88.39 0.73 5.74 16 19 C -0.06 -0.83 10.51 71.23 0.75 -0.08 16 20 N -0.50 -16.61 11.06 -293.05 -3.24 -19.85 16 21 N -0.72 -35.56 3.17 -326.51 -1.04 -36.60 16 22 C -0.23 -12.54 9.92 84.03 0.83 -11.70 16 23 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 24 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 25 N -0.96 -57.69 13.06 21.65 0.28 -57.41 16 26 Si 0.96 46.11 29.55 68.60 2.03 48.14 16 27 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 28 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 29 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.07 1.08 7.66 -2.39 -0.02 1.06 16 32 H 0.06 1.07 7.66 -2.38 -0.02 1.05 16 33 H 0.15 3.01 6.30 -2.91 -0.02 2.99 16 34 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 35 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 36 H 0.11 4.96 7.14 -2.91 -0.02 4.94 16 37 H 0.08 2.95 8.10 -2.39 -0.02 2.93 16 38 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.41 17.65 7.87 -92.71 -0.73 16.92 16 40 H 0.26 4.52 8.06 -2.91 -0.02 4.50 16 41 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.12 0.96 8.14 -2.39 -0.02 0.95 16 43 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.37 20.29 7.80 -92.71 -0.72 19.57 16 45 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -73.96 390.69 1.28 -72.69 By element: Atomic # 1 Polarization: 50.14 SS G_CDS: -0.41 Total: 49.73 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 7.12 Total: 12.78 kcal Atomic # 7 Polarization: -137.62 SS G_CDS: -6.51 Total: -144.12 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -0.96 Total: -39.22 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -73.96 1.28 -72.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198685704.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.970 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds