Wall clock time and date at job start Wed Apr 1 2020 03:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99814 * 2 1 4 4 C 1.38753 * 120.05719 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05457 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.02482 * 179.97438 * 8 7 6 10 10 H 1.09010 * 109.46899 * 145.00293 * 9 8 7 11 11 C 1.52996 * 109.47030 * 264.99712 * 9 8 7 12 12 N 1.46499 * 109.47313 * 175.00114 * 11 9 8 13 13 C 1.34773 * 120.00567 * 179.97438 * 12 11 9 14 14 O 1.21583 * 119.99842 * 0.02562 * 13 12 11 15 15 C 1.47509 * 120.00655 * 180.02562 * 13 12 11 16 16 O 1.34645 * 126.93791 * 0.02562 * 15 13 12 17 17 N 1.20895 * 111.46270 * 179.97438 * 16 15 13 18 18 C 1.30123 * 111.98500 * 0.02562 * 17 16 15 19 19 C 1.36823 * 126.94821 * 179.71522 * 15 13 12 20 20 C 1.50701 * 128.07501 * 0.02562 * 19 15 13 21 21 N 1.46492 * 109.47302 * 25.00041 * 9 8 7 22 22 C 1.36938 * 120.00059 * 85.00355 * 21 9 8 23 23 H 1.08000 * 120.00356 * 359.97438 * 22 21 9 24 24 C 1.38814 * 120.00202 * 180.02562 * 22 21 9 25 25 N 1.31621 * 120.00103 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00427 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.47095 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47259 * 119.99266 * 26 24 22 29 29 H 1.48498 * 109.47400 * 239.99900 * 26 24 22 30 30 H 1.09003 * 109.47156 * 299.99662 * 1 2 3 31 31 H 1.09000 * 109.47372 * 59.99966 * 1 2 3 32 32 H 1.09003 * 109.46801 * 180.02562 * 1 2 3 33 33 H 1.08002 * 120.02760 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.97891 * 180.25368 * 5 4 3 35 35 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 36 36 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.47580 * 295.00303 * 11 9 8 38 38 H 1.08994 * 109.47259 * 55.00330 * 11 9 8 39 39 H 0.97006 * 119.99783 * 0.02562 * 12 11 9 40 40 H 1.08002 * 126.70713 * 180.02562 * 18 17 16 41 41 H 1.09005 * 109.46852 * 90.00294 * 20 19 15 42 42 H 1.08998 * 109.47115 * 210.00410 * 20 19 15 43 43 H 1.09000 * 109.47431 * 330.01108 * 20 19 15 44 44 H 0.97000 * 120.00160 * 264.99444 * 21 9 8 45 45 H 0.96991 * 120.00320 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3018 3.6758 -0.0005 7 6 4.0559 2.5172 -0.0011 8 6 3.4311 1.2849 -0.0005 9 6 4.2538 0.0223 -0.0017 10 1 3.7474 -0.7418 0.5882 11 6 4.4251 -0.4734 -1.4390 12 7 5.3225 -1.6313 -1.4525 13 6 5.6208 -2.2392 -2.6178 14 8 5.1454 -1.8264 -3.6579 15 6 6.5239 -3.4055 -2.6314 16 8 7.1244 -3.9763 -1.5700 17 7 7.8058 -4.9184 -1.9010 18 6 7.7700 -5.1177 -3.1864 19 6 6.9160 -4.1293 -3.7242 20 6 6.5296 -3.9191 -5.1656 21 7 5.5698 0.2964 0.5805 22 6 5.7408 0.2504 1.9384 23 1 4.9055 0.0124 2.5802 24 6 6.9878 0.5106 2.4901 25 7 8.0058 0.8011 1.7081 26 14 7.2210 0.4486 4.3424 27 1 5.9313 0.1028 4.9924 28 1 8.2371 -0.5806 4.6792 29 1 7.6797 1.7747 4.8283 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2128 2.3203 0.0005 34 1 1.3339 4.5114 0.0046 35 1 3.7920 4.6381 -0.0014 36 1 5.1344 2.5754 -0.0019 37 1 3.4543 -0.7614 -1.8422 38 1 4.8504 0.3229 -2.0497 39 1 5.7015 -1.9609 -0.6226 40 1 8.2879 -5.8910 -3.7344 41 1 7.2426 -3.2433 -5.6380 42 1 6.5361 -4.8764 -5.6868 43 1 5.5308 -3.4855 -5.2146 44 1 6.3201 0.5104 0.0042 45 1 8.8772 0.9826 2.0936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198953384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:40 Heat of formation + Delta-G solvation = 32.067359 kcal Electronic energy + Delta-G solvation = -30220.339814 eV Core-core repulsion = 26014.361963 eV Total energy + Delta-G solvation = -4205.977851 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.94334 -40.00188 -39.33168 -37.24866 -35.97683 -34.75770 -33.64828 -32.40069 -31.88502 -29.75095 -29.70987 -28.66212 -27.46840 -26.95788 -24.35376 -23.46668 -22.87235 -21.89575 -21.58991 -20.42244 -20.08653 -18.48059 -17.71985 -17.67532 -17.24276 -16.02548 -15.95457 -15.66232 -15.46029 -15.21293 -14.97021 -14.59197 -14.31741 -13.95570 -13.70684 -13.63280 -13.33069 -13.23337 -13.16718 -12.91897 -12.84899 -12.65429 -12.40681 -12.10664 -11.74277 -11.30095 -11.26143 -10.98766 -10.88703 -10.82177 -10.74202 -10.53224 -10.37191 -10.09461 -10.08332 -9.76381 -9.45663 -9.07178 -8.77396 -8.36115 -7.75564 -7.11855 -5.84250 -3.15875 0.88407 1.78201 1.86952 2.08135 2.75596 3.16378 3.40585 3.46943 3.48383 3.49332 3.54914 4.16010 4.21377 4.52981 4.60489 4.83007 5.03280 5.04227 5.13703 5.21934 5.25681 5.32820 5.48286 5.49299 5.50355 5.54682 5.55421 5.64706 5.66612 5.80327 5.82756 5.90748 5.93516 6.13218 6.22562 6.27197 6.39330 6.55481 6.62684 6.74653 6.90142 7.14414 7.31193 7.62938 7.68957 7.73609 8.10312 8.25750 8.32222 9.45319 9.94292 10.31276 11.37141 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007722 B = 0.004118 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.084017 B = 6797.147433 C = 9320.325692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.122 3.878 4 C -0.219 4.219 5 C -0.094 4.094 6 C -0.163 4.163 7 C -0.043 4.043 8 C -0.115 4.115 9 C 0.207 3.793 10 H 0.073 0.927 11 C 0.122 3.878 12 N -0.692 5.692 13 C 0.601 3.399 14 O -0.525 6.525 15 C -0.081 4.081 16 O 0.124 5.876 17 N -0.343 5.343 18 C -0.020 4.020 19 C -0.130 4.130 20 C -0.083 4.083 21 N -0.716 5.716 22 C -0.242 4.242 23 H 0.072 0.928 24 C -0.004 4.004 25 N -0.928 5.928 26 Si 0.904 3.096 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.292 1.292 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.139 0.861 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.418 0.582 40 H 0.196 0.804 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.387 0.613 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.198 -4.346 -10.365 15.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.077 3.923 4 C -0.238 4.238 5 C -0.112 4.112 6 C -0.182 4.182 7 C -0.062 4.062 8 C -0.119 4.119 9 C 0.096 3.904 10 H 0.090 0.910 11 C -0.002 4.002 12 N -0.343 5.343 13 C 0.384 3.616 14 O -0.402 6.402 15 C -0.147 4.147 16 O 0.050 5.950 17 N -0.042 5.042 18 C -0.198 4.198 19 C -0.135 4.135 20 C -0.140 4.140 21 N -0.357 5.357 22 C -0.373 4.373 23 H 0.090 0.910 24 C -0.201 4.201 25 N -0.575 5.575 26 Si 0.735 3.265 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.219 1.219 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.136 0.864 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.157 0.843 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.255 0.745 40 H 0.213 0.787 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.221 0.779 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.819 -4.884 -9.870 14.754 hybrid contribution 0.168 0.392 0.731 0.846 sum -9.651 -4.492 -9.139 14.030 Atomic orbital electron populations 1.22962 0.79366 1.03356 1.00877 1.86084 1.20489 1.27182 1.88929 1.18940 0.91954 0.83810 0.97589 1.21053 0.99221 0.92621 1.10856 1.20790 0.94721 0.96459 0.99277 1.21069 0.93721 0.98541 1.04838 1.21038 1.01135 0.90381 0.93614 1.20384 0.89931 0.98155 1.03480 1.19251 0.87838 0.92119 0.91179 0.90954 1.21684 0.93210 0.86939 0.98318 1.45907 1.47788 1.31275 1.09357 1.16482 0.79851 0.80556 0.84717 1.90805 1.53240 1.64150 1.32052 1.24146 1.02785 1.00346 0.87428 1.85037 1.44765 1.32236 1.32918 1.73789 1.10713 1.02998 1.16682 1.24961 1.01995 1.02318 0.90522 1.21591 0.98706 0.95295 0.97940 1.20285 1.03672 1.02312 0.87698 1.42492 1.04770 1.83440 1.05004 1.19221 0.94701 1.40555 0.82801 0.91000 1.24705 0.95837 1.01961 0.97594 1.69656 1.00642 1.53685 1.33540 0.86173 0.77596 0.77169 0.85559 1.20541 1.21818 1.21917 0.93093 0.93081 0.88718 0.86364 0.86773 0.86567 0.84289 0.90781 0.91211 0.74459 0.78725 0.90341 0.91076 0.89217 0.77862 0.93433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.70 9.63 -19.42 -0.19 -4.88 16 3 C 0.12 1.99 6.66 -39.22 -0.26 1.73 16 4 C -0.22 -3.13 9.04 -39.43 -0.36 -3.49 16 5 C -0.09 -1.33 10.04 -39.60 -0.40 -1.73 16 6 C -0.16 -2.57 10.04 -39.56 -0.40 -2.97 16 7 C -0.04 -0.79 9.32 -39.61 -0.37 -1.16 16 8 C -0.12 -2.08 5.04 -104.47 -0.53 -2.61 16 9 C 0.21 3.87 2.38 -69.09 -0.16 3.70 16 10 H 0.07 1.42 7.63 -51.92 -0.40 1.02 16 11 C 0.12 2.06 5.21 -4.04 -0.02 2.03 16 12 N -0.69 -11.48 5.38 -61.37 -0.33 -11.81 16 13 C 0.60 9.88 7.82 -12.48 -0.10 9.78 16 14 O -0.52 -9.33 15.12 5.29 0.08 -9.25 16 15 C -0.08 -1.24 7.29 -36.32 -0.26 -1.50 16 16 O 0.12 1.99 11.04 15.54 0.17 2.17 16 17 N -0.34 -5.22 12.04 30.46 0.37 -4.86 16 18 C -0.02 -0.25 12.14 -17.13 -0.21 -0.46 16 19 C -0.13 -1.69 6.37 -103.98 -0.66 -2.35 16 20 C -0.08 -0.85 9.95 36.01 0.36 -0.50 16 21 N -0.72 -15.92 3.30 -54.56 -0.18 -16.10 16 22 C -0.24 -6.16 9.92 -15.06 -0.15 -6.31 16 23 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 24 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 25 N -0.93 -26.27 13.06 55.49 0.72 -25.54 16 26 Si 0.90 21.68 29.55 -169.99 -5.02 16.66 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 30 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 31 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.12 1.37 6.30 -52.49 -0.33 1.04 16 34 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 36 H 0.14 2.78 7.26 -52.49 -0.38 2.40 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.42 7.20 7.97 -40.82 -0.33 6.87 16 40 H 0.20 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 1.05 6.73 -51.93 -0.35 0.70 16 44 H 0.39 9.24 7.80 -40.82 -0.32 8.92 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -30.18 387.02 -6.99 -37.17 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -5.83 Total: 15.34 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -2.62 Total: -4.72 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: 0.58 Total: -58.31 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.06 Total: -11.97 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.18 -6.99 -37.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198953384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.235 kcal (2) G-P(sol) polarization free energy of solvation -30.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds