Wall clock time and date at job start Wed Apr 1 2020 03:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99814 * 2 1 4 4 C 1.38753 * 120.05719 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 359.97438 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05457 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.02482 * 179.97438 * 8 7 6 10 10 H 1.09010 * 109.46899 * 145.00293 * 9 8 7 11 11 C 1.52996 * 109.47030 * 264.99712 * 9 8 7 12 12 N 1.46499 * 109.47313 * 175.00114 * 11 9 8 13 13 C 1.34773 * 120.00567 * 179.97438 * 12 11 9 14 14 O 1.21583 * 119.99842 * 0.02562 * 13 12 11 15 15 C 1.47509 * 120.00655 * 180.02562 * 13 12 11 16 16 O 1.34645 * 126.93791 * 0.02562 * 15 13 12 17 17 N 1.20895 * 111.46270 * 179.97438 * 16 15 13 18 18 C 1.30123 * 111.98500 * 0.02562 * 17 16 15 19 19 C 1.36823 * 126.94821 * 179.71522 * 15 13 12 20 20 C 1.50701 * 128.07501 * 0.02562 * 19 15 13 21 21 N 1.46492 * 109.47302 * 25.00041 * 9 8 7 22 22 C 1.36938 * 120.00059 * 85.00355 * 21 9 8 23 23 H 1.08000 * 120.00356 * 359.97438 * 22 21 9 24 24 C 1.38814 * 120.00202 * 180.02562 * 22 21 9 25 25 N 1.31621 * 120.00103 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00427 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.47095 * 359.97438 * 26 24 22 28 28 H 1.48498 * 109.47259 * 119.99266 * 26 24 22 29 29 H 1.48498 * 109.47400 * 239.99900 * 26 24 22 30 30 H 1.09003 * 109.47156 * 299.99662 * 1 2 3 31 31 H 1.09000 * 109.47372 * 59.99966 * 1 2 3 32 32 H 1.09003 * 109.46801 * 180.02562 * 1 2 3 33 33 H 1.08002 * 120.02760 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.97891 * 180.25368 * 5 4 3 35 35 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 36 36 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 37 37 H 1.08998 * 109.47580 * 295.00303 * 11 9 8 38 38 H 1.08994 * 109.47259 * 55.00330 * 11 9 8 39 39 H 0.97006 * 119.99783 * 0.02562 * 12 11 9 40 40 H 1.08002 * 126.70713 * 180.02562 * 18 17 16 41 41 H 1.09005 * 109.46852 * 90.00294 * 20 19 15 42 42 H 1.08998 * 109.47115 * 210.00410 * 20 19 15 43 43 H 1.09000 * 109.47431 * 330.01108 * 20 19 15 44 44 H 0.97000 * 120.00160 * 264.99444 * 21 9 8 45 45 H 0.96991 * 120.00320 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3018 3.6758 -0.0005 7 6 4.0559 2.5172 -0.0011 8 6 3.4311 1.2849 -0.0005 9 6 4.2538 0.0223 -0.0017 10 1 3.7474 -0.7418 0.5882 11 6 4.4251 -0.4734 -1.4390 12 7 5.3225 -1.6313 -1.4525 13 6 5.6208 -2.2392 -2.6178 14 8 5.1454 -1.8264 -3.6579 15 6 6.5239 -3.4055 -2.6314 16 8 7.1244 -3.9763 -1.5700 17 7 7.8058 -4.9184 -1.9010 18 6 7.7700 -5.1177 -3.1864 19 6 6.9160 -4.1293 -3.7242 20 6 6.5296 -3.9191 -5.1656 21 7 5.5698 0.2964 0.5805 22 6 5.7408 0.2504 1.9384 23 1 4.9055 0.0124 2.5802 24 6 6.9878 0.5106 2.4901 25 7 8.0058 0.8011 1.7081 26 14 7.2210 0.4486 4.3424 27 1 5.9313 0.1028 4.9924 28 1 8.2371 -0.5806 4.6792 29 1 7.6797 1.7747 4.8283 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2128 2.3203 0.0005 34 1 1.3339 4.5114 0.0046 35 1 3.7920 4.6381 -0.0014 36 1 5.1344 2.5754 -0.0019 37 1 3.4543 -0.7614 -1.8422 38 1 4.8504 0.3229 -2.0497 39 1 5.7015 -1.9609 -0.6226 40 1 8.2879 -5.8910 -3.7344 41 1 7.2426 -3.2433 -5.6380 42 1 6.5361 -4.8764 -5.6868 43 1 5.5308 -3.4855 -5.2146 44 1 6.3201 0.5104 0.0042 45 1 8.8772 0.9826 2.0936 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198953384.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:39 Heat of formation + Delta-G solvation = 12.967635 kcal Electronic energy + Delta-G solvation = -30221.168040 eV Core-core repulsion = 26014.361963 eV Total energy + Delta-G solvation = -4206.806077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -46.02204 -41.24266 -40.63592 -38.49590 -37.38039 -35.88574 -35.19668 -33.86966 -33.19764 -31.32938 -30.92614 -29.79706 -28.71440 -27.93590 -25.91817 -25.01996 -24.10710 -23.02672 -22.79180 -21.69849 -21.43326 -19.76332 -19.25231 -18.79881 -18.72549 -17.42385 -17.22926 -16.81931 -16.61221 -16.47749 -16.29923 -16.09648 -15.69157 -15.24918 -15.15606 -14.94704 -14.65451 -14.31979 -14.23058 -14.16466 -14.05524 -13.78933 -13.57738 -13.45759 -12.90522 -12.86042 -12.71879 -12.51167 -12.27054 -12.23232 -12.01916 -11.89896 -11.83674 -11.62173 -11.45377 -11.40402 -10.98410 -10.58678 -10.12651 -9.65429 -9.07454 -8.93315 -7.91065 -5.20285 -0.29195 0.53384 0.63252 1.08346 1.47835 1.49976 1.57039 1.58005 1.88273 2.20907 2.52073 2.57298 2.95652 3.20558 3.42798 3.57797 3.70562 3.78081 3.98591 3.99544 4.09658 4.17285 4.31031 4.33630 4.41004 4.42346 4.48166 4.60574 4.64877 4.75814 4.77652 4.79941 4.82579 4.93042 4.95013 5.05007 5.18945 5.26206 5.34001 5.48044 5.57300 5.65931 5.85337 6.04086 6.27517 6.29297 6.60756 6.85402 7.02607 7.37857 8.04355 8.32321 9.31092 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007722 B = 0.004118 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3625.084017 B = 6797.147433 C = 9320.325692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.118 3.882 4 C -0.213 4.213 5 C -0.085 4.085 6 C -0.172 4.172 7 C -0.066 4.066 8 C -0.141 4.141 9 C 0.216 3.784 10 H 0.062 0.938 11 C 0.136 3.864 12 N -0.695 5.695 13 C 0.603 3.397 14 O -0.541 6.541 15 C -0.108 4.108 16 O 0.094 5.906 17 N -0.368 5.368 18 C 0.001 3.999 19 C -0.118 4.118 20 C -0.082 4.082 21 N -0.718 5.718 22 C -0.226 4.226 23 H 0.069 0.931 24 C -0.060 4.060 25 N -0.961 5.961 26 Si 0.959 3.041 27 H -0.271 1.271 28 H -0.296 1.296 29 H -0.297 1.297 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.114 0.886 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.131 0.869 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.060 0.940 39 H 0.414 0.586 40 H 0.240 0.760 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.073 0.927 44 H 0.376 0.624 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.353 -4.833 -11.371 17.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.072 3.928 4 C -0.232 4.232 5 C -0.103 4.103 6 C -0.190 4.190 7 C -0.084 4.084 8 C -0.145 4.145 9 C 0.106 3.894 10 H 0.080 0.920 11 C 0.012 3.988 12 N -0.345 5.345 13 C 0.388 3.612 14 O -0.420 6.420 15 C -0.174 4.174 16 O 0.025 5.975 17 N -0.072 5.072 18 C -0.177 4.177 19 C -0.123 4.123 20 C -0.138 4.138 21 N -0.358 5.358 22 C -0.358 4.358 23 H 0.087 0.913 24 C -0.253 4.253 25 N -0.612 5.612 26 Si 0.790 3.210 27 H -0.195 1.195 28 H -0.224 1.224 29 H -0.225 1.225 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.132 0.868 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.149 0.851 36 H 0.126 0.874 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.250 0.750 40 H 0.256 0.744 41 H 0.105 0.895 42 H 0.125 0.875 43 H 0.092 0.908 44 H 0.209 0.791 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -12.057 -5.354 -10.868 17.093 hybrid contribution 0.694 0.485 0.923 1.253 sum -11.363 -4.869 -9.945 15.866 Atomic orbital electron populations 1.23306 0.76804 1.05224 1.02165 1.86059 1.23160 1.26782 1.88727 1.18985 0.91397 0.85154 0.97234 1.21445 1.00874 0.91758 1.09120 1.21209 0.94066 0.97958 0.97055 1.21276 0.94796 0.98184 1.04721 1.20882 0.99923 0.91801 0.95832 1.20172 0.91158 0.97208 1.05918 1.19214 0.86073 0.92497 0.91600 0.92040 1.21511 0.93539 0.86733 0.96993 1.45908 1.47901 1.31276 1.09427 1.16614 0.79693 0.80736 0.84206 1.90783 1.54024 1.64867 1.32307 1.24072 1.03949 1.00886 0.88472 1.85013 1.45834 1.33114 1.33520 1.73783 1.11524 1.03336 1.18509 1.25669 1.00464 1.02048 0.89501 1.22077 0.97450 0.94244 0.98558 1.20404 1.02783 1.04401 0.86243 1.42469 1.05993 1.83449 1.03893 1.19413 0.94208 1.38039 0.84162 0.91276 1.25301 0.95927 1.03233 1.00818 1.69789 1.00716 1.55951 1.34707 0.85287 0.77464 0.76444 0.81835 1.19533 1.22380 1.22484 0.91990 0.91416 0.86804 0.82979 0.83052 0.85087 0.87405 0.89875 0.92147 0.74964 0.74354 0.89479 0.87480 0.90792 0.79062 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.46 16 2 O -0.33 -9.56 9.63 -92.39 -0.89 -10.45 16 3 C 0.12 3.71 6.66 22.51 0.15 3.86 16 4 C -0.21 -5.48 9.04 22.37 0.20 -5.28 16 5 C -0.09 -2.15 10.04 22.26 0.22 -1.93 16 6 C -0.17 -5.26 10.04 22.28 0.22 -5.03 16 7 C -0.07 -2.48 9.32 22.25 0.21 -2.27 16 8 C -0.14 -5.18 5.04 -19.77 -0.10 -5.28 16 9 C 0.22 8.40 2.38 44.24 0.11 8.51 16 10 H 0.06 2.51 7.63 -2.38 -0.02 2.49 16 11 C 0.14 4.79 5.21 86.38 0.45 5.24 16 12 N -0.70 -24.32 5.38 -466.33 -2.51 -26.84 16 13 C 0.60 20.55 7.82 86.69 0.68 21.23 16 14 O -0.54 -19.61 15.12 -3.98 -0.06 -19.67 16 15 C -0.11 -3.37 7.29 24.38 0.18 -3.19 16 16 O 0.09 3.11 11.04 65.78 0.73 3.84 16 17 N -0.37 -11.06 12.04 -58.54 -0.70 -11.77 16 18 C 0.00 0.03 12.14 85.69 1.04 1.07 16 19 C -0.12 -2.91 6.37 -19.45 -0.12 -3.03 16 20 C -0.08 -1.51 9.95 71.24 0.71 -0.80 16 21 N -0.72 -33.62 3.30 -326.52 -1.08 -34.70 16 22 C -0.23 -11.92 9.92 84.03 0.83 -11.09 16 23 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 24 C -0.06 -3.31 5.50 84.86 0.47 -2.84 16 25 N -0.96 -56.67 13.06 21.65 0.28 -56.39 16 26 Si 0.96 45.70 29.55 68.60 2.03 47.73 16 27 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 28 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 29 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 30 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 31 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 32 H 0.11 1.57 8.14 -2.39 -0.02 1.56 16 33 H 0.15 2.83 6.30 -2.91 -0.02 2.81 16 34 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 36 H 0.11 4.65 7.26 -2.91 -0.02 4.63 16 37 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 38 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.41 15.25 7.97 -92.70 -0.74 14.52 16 40 H 0.24 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.65 6.73 -2.39 -0.02 1.63 16 44 H 0.38 19.17 7.80 -92.71 -0.72 18.44 16 45 H 0.25 14.46 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -68.18 387.02 3.74 -64.44 By element: Atomic # 1 Polarization: 43.60 SS G_CDS: -0.41 Total: 43.18 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 6.36 Total: 0.63 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -4.01 Total: -129.69 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.22 Total: -26.28 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -68.18 3.74 -64.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198953384.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.405 kcal (2) G-P(sol) polarization free energy of solvation -68.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds