Wall clock time and date at job start Wed Apr 1 2020 03:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 108.57867 * 2 1 4 4 C 1.50706 * 109.46830 * 300.69598 * 3 2 1 5 5 O 1.21284 * 119.99588 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99767 * 179.97438 * 4 3 2 7 7 C 1.46506 * 119.99635 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47212 * 325.00311 * 7 6 4 9 9 C 1.53005 * 109.46831 * 205.00143 * 7 6 4 10 10 N 1.46502 * 109.47209 * 55.00453 * 9 7 6 11 11 C 1.36934 * 119.99993 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99681 * 359.97438 * 11 10 9 13 13 C 1.38808 * 119.99749 * 180.02562 * 11 10 9 14 14 N 1.31619 * 120.00389 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99883 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47221 * 89.99767 * 15 13 11 17 17 H 1.48500 * 109.47354 * 209.99802 * 15 13 11 18 18 H 1.48503 * 109.47355 * 329.99746 * 15 13 11 19 19 C 1.53002 * 109.47035 * 85.00546 * 7 6 4 20 20 C 1.53006 * 117.49719 * 8.61621 * 19 7 6 21 21 C 1.53001 * 117.49652 * 299.99663 * 19 7 6 22 22 C 1.53200 * 108.64817 * 117.99121 * 2 1 3 23 23 C 1.55562 * 106.24126 * 148.48212 * 22 2 1 24 24 S 1.83899 * 99.64105 * 323.01692 * 23 22 2 25 25 O 1.42100 * 111.46626 * 144.08932 * 24 23 22 26 26 O 1.42100 * 111.46482 * 283.93422 * 24 23 22 27 27 N 1.46447 * 108.64974 * 242.00153 * 2 1 3 28 28 H 1.08993 * 109.47075 * 59.30621 * 1 2 3 29 29 H 1.08999 * 109.46618 * 179.30345 * 1 2 3 30 30 H 1.09002 * 109.46882 * 299.30026 * 1 2 3 31 31 H 1.08999 * 109.46918 * 180.70404 * 3 2 1 32 32 H 1.08994 * 109.47233 * 60.69422 * 3 2 1 33 33 H 0.97000 * 120.00547 * 0.02562 * 6 4 3 34 34 H 1.09000 * 109.46692 * 175.00236 * 9 7 6 35 35 H 1.08993 * 109.47016 * 295.00161 * 9 7 6 36 36 H 0.97000 * 119.99673 * 359.97438 * 10 9 7 37 37 H 0.96996 * 120.00543 * 180.02562 * 14 13 11 38 38 H 1.08994 * 115.54955 * 154.32810 * 19 7 6 39 39 H 1.08995 * 117.49684 * 0.02562 * 20 19 7 40 40 H 1.09000 * 117.49162 * 145.02229 * 20 19 7 41 41 H 1.09000 * 117.49938 * 214.97982 * 21 19 7 42 42 H 1.09001 * 117.49931 * 0.02562 * 21 19 7 43 43 H 1.08999 * 110.10278 * 267.67872 * 22 2 1 44 44 H 1.09007 * 110.09815 * 29.29093 * 22 2 1 45 45 H 1.09001 * 111.36604 * 80.61671 * 23 22 2 46 46 H 1.08999 * 111.36955 * 205.35779 * 23 22 2 47 47 H 0.96993 * 126.08612 * 57.30443 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0175 1.4503 0.0000 4 6 1.4900 2.1575 -1.2218 5 8 0.7925 1.5604 -2.0142 6 7 1.7926 3.4537 -1.4333 7 6 1.2793 4.1413 -2.6208 8 1 1.2439 3.4438 -3.4577 9 6 2.2009 5.3115 -2.9707 10 7 3.5732 4.8227 -3.1263 11 6 4.5793 5.6961 -3.4426 12 1 4.3610 6.7451 -3.5778 13 6 5.8794 5.2329 -3.5905 14 7 6.1453 3.9543 -3.4262 15 14 7.2518 6.4241 -4.0228 16 1 7.8502 6.9637 -2.7753 17 1 8.2952 5.7143 -4.8055 18 1 6.7011 7.5415 -4.8312 19 6 -0.1286 4.6684 -2.3362 20 6 -0.6375 4.5821 -0.8958 21 6 -1.2042 3.6456 -1.9648 22 6 2.0199 -0.6813 1.2818 23 6 3.3654 -1.3731 0.9198 24 16 2.9741 -1.9335 -0.7874 25 8 4.1109 -1.8490 -1.6358 26 8 2.1273 -3.0746 -0.7789 27 7 1.9983 -0.6514 -1.2252 28 1 -0.3633 0.5245 -0.8836 29 1 -0.3632 -1.0276 -0.0125 30 1 -0.3633 0.5029 0.8962 31 1 3.1073 1.4673 -0.0126 32 1 1.6565 1.9550 0.8961 33 1 2.3501 3.9313 -0.7994 34 1 1.8699 5.7682 -3.9034 35 1 2.1673 6.0519 -2.1716 36 1 3.7690 3.8805 -3.0052 37 1 7.0538 3.6307 -3.5292 38 1 -0.4366 5.5301 -2.9284 39 1 0.0309 4.1502 -0.1510 40 1 -1.2803 5.3873 -0.5402 41 1 -2.2198 3.8345 -2.3124 42 1 -0.9086 2.5972 -1.9228 43 1 2.1790 0.0615 2.0635 44 1 1.2937 -1.4241 1.6122 45 1 4.1915 -0.6620 0.9249 46 1 3.5680 -2.2171 1.5792 47 1 1.7799 -0.3866 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269140877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:29 Heat of formation + Delta-G solvation = -55.432783 kcal Electronic energy + Delta-G solvation = -30079.614184 eV Core-core repulsion = 26005.285994 eV Total energy + Delta-G solvation = -4074.328191 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.53325 -38.60198 -37.08809 -36.68868 -35.85851 -34.94067 -33.36450 -31.90717 -31.39496 -30.54797 -28.72887 -27.37620 -24.39602 -24.03127 -22.29445 -21.60239 -21.32675 -20.25807 -19.70234 -19.55802 -17.59313 -17.42070 -16.92192 -16.43984 -16.10372 -15.80581 -15.64313 -15.24365 -14.71774 -14.52299 -14.42086 -14.04818 -13.75666 -13.58117 -13.41050 -13.24133 -12.95939 -12.76462 -12.38875 -12.15393 -12.06619 -11.97169 -11.96335 -11.79755 -11.55941 -11.43665 -11.37056 -11.18024 -11.04151 -10.90806 -10.84666 -10.63986 -10.27566 -10.11938 -9.83158 -9.62247 -9.48761 -9.38626 -8.94276 -8.69123 -6.99447 -5.80337 -3.10863 0.21944 2.57674 2.78956 3.33766 3.40548 3.46205 3.48330 3.55067 3.76920 3.99855 4.04564 4.31870 4.44120 4.53351 4.72978 4.83984 4.91505 5.02637 5.12527 5.15177 5.16658 5.22729 5.32509 5.33255 5.47012 5.51480 5.54372 5.61619 5.72812 5.77682 5.84255 5.96796 5.97336 6.02196 6.17856 6.26780 6.33155 6.44292 6.53752 6.66291 6.89020 7.30158 7.65541 7.77774 8.37024 8.45968 9.49034 10.04035 10.39375 11.41637 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009543 B = 0.003961 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.466818 B = 7067.934096 C = 9338.867631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.162 3.838 3 C -0.154 4.154 4 C 0.522 3.478 5 O -0.539 6.539 6 N -0.706 5.706 7 C 0.168 3.832 8 H 0.092 0.908 9 C 0.148 3.852 10 N -0.731 5.731 11 C -0.245 4.245 12 H 0.070 0.930 13 C -0.010 4.010 14 N -0.929 5.929 15 Si 0.907 3.093 16 H -0.290 1.290 17 H -0.291 1.291 18 H -0.282 1.282 19 C -0.160 4.160 20 C -0.177 4.177 21 C -0.187 4.187 22 C -0.117 4.117 23 C -0.598 4.598 24 S 2.566 3.434 25 O -0.956 6.956 26 O -0.960 6.960 27 N -1.077 6.077 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.405 0.595 34 H 0.033 0.967 35 H 0.025 0.975 36 H 0.386 0.614 37 H 0.256 0.744 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.111 0.889 44 H 0.099 0.901 45 H 0.143 0.857 46 H 0.138 0.862 47 H 0.444 0.556 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 -7.058 13.961 20.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.071 3.929 3 C -0.196 4.196 4 C 0.309 3.691 5 O -0.418 6.418 6 N -0.356 5.356 7 C 0.063 3.937 8 H 0.109 0.891 9 C 0.020 3.980 10 N -0.376 5.376 11 C -0.376 4.376 12 H 0.088 0.912 13 C -0.206 4.206 14 N -0.577 5.577 15 Si 0.738 3.262 16 H -0.217 1.217 17 H -0.217 1.217 18 H -0.208 1.208 19 C -0.180 4.180 20 C -0.214 4.214 21 C -0.223 4.223 22 C -0.156 4.156 23 C -0.728 4.728 24 S 2.660 3.340 25 O -0.945 6.945 26 O -0.949 6.949 27 N -0.847 5.847 28 H 0.117 0.883 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.240 0.760 34 H 0.050 0.950 35 H 0.043 0.957 36 H 0.220 0.780 37 H 0.066 0.934 38 H 0.126 0.874 39 H 0.109 0.891 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.136 0.864 43 H 0.130 0.870 44 H 0.118 0.882 45 H 0.162 0.838 46 H 0.157 0.843 47 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -12.948 -8.179 12.821 19.973 hybrid contribution 1.100 1.401 0.272 1.801 sum -11.848 -6.779 13.093 18.914 Atomic orbital electron populations 1.22537 0.92756 1.03215 1.04337 1.20211 0.96843 0.91755 0.84077 1.22274 1.03688 0.95720 0.97870 1.20326 0.79802 0.81770 0.87215 1.90485 1.38526 1.65525 1.47258 1.46016 1.52218 1.11163 1.26231 1.20750 0.90361 0.94806 0.87775 0.89051 1.20903 0.85809 0.93104 0.98211 1.42335 1.01417 1.08803 1.85061 1.19186 0.87406 0.90814 1.40238 0.91198 1.24747 0.97435 0.96012 1.02447 1.69655 1.19698 1.12375 1.55949 0.86206 0.82201 0.79938 0.77881 1.21740 1.21746 1.20777 1.22693 0.95006 1.01546 0.98720 1.22858 1.03686 1.02655 0.92241 1.23337 0.97451 0.98612 1.02922 1.22524 0.93859 1.01760 0.97456 1.30826 1.05778 1.12041 1.24190 1.06451 0.75110 0.74521 0.77939 1.93654 1.51583 1.86356 1.62936 1.93636 1.66223 1.48799 1.86232 1.55029 1.67183 1.49359 1.13085 0.88276 0.92056 0.92379 0.87914 0.88087 0.76010 0.94972 0.95720 0.77985 0.93374 0.87441 0.89084 0.89669 0.89915 0.86370 0.87031 0.88229 0.83828 0.84343 0.71213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 8.15 37.16 0.30 -1.27 16 2 C 0.16 1.50 0.83 -131.74 -0.11 1.39 16 3 C -0.15 -1.45 4.70 -27.88 -0.13 -1.58 16 4 C 0.52 6.74 6.15 -10.98 -0.07 6.67 16 5 O -0.54 -7.92 8.83 5.55 0.05 -7.87 16 6 N -0.71 -9.65 3.06 -53.80 -0.16 -9.82 16 7 C 0.17 2.59 2.59 -67.92 -0.18 2.41 16 8 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 9 C 0.15 2.74 5.80 -4.04 -0.02 2.72 16 10 N -0.73 -17.44 5.43 -59.91 -0.33 -17.77 16 11 C -0.25 -6.62 9.99 -15.06 -0.15 -6.77 16 12 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 13 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 14 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 15 Si 0.91 22.01 29.55 -169.99 -5.02 16.99 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 C -0.16 -2.07 5.71 -90.61 -0.52 -2.59 16 20 C -0.18 -1.99 9.73 -26.73 -0.26 -2.25 16 21 C -0.19 -2.28 9.82 -26.73 -0.26 -2.54 16 22 C -0.12 -0.73 5.56 -25.27 -0.14 -0.87 16 23 C -0.60 -4.18 7.66 38.52 0.29 -3.89 16 24 S 2.57 30.47 6.46 -107.50 -0.69 29.77 16 25 O -0.96 -15.89 18.14 -57.40 -1.04 -16.94 16 26 O -0.96 -13.86 18.15 -57.40 -1.04 -14.90 16 27 N -1.08 -12.83 5.65 0.60 0.00 -12.82 16 28 H 0.10 1.15 5.31 -51.93 -0.28 0.87 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.10 0.65 8.04 -51.93 -0.42 0.23 16 33 H 0.40 5.34 8.60 -40.82 -0.35 4.99 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.39 9.82 7.33 -40.82 -0.30 9.52 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.11 1.33 8.11 -51.93 -0.42 0.91 16 39 H 0.09 0.99 6.66 -51.93 -0.35 0.64 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.12 1.61 4.97 -51.93 -0.26 1.36 16 43 H 0.11 0.44 7.71 -51.93 -0.40 0.04 16 44 H 0.10 0.52 7.83 -51.92 -0.41 0.11 16 45 H 0.14 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.44 5.98 7.26 -40.18 -0.29 5.69 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -36.06 380.68 -10.33 -46.39 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: -7.21 Total: 17.07 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -1.34 Total: -8.96 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: 0.24 Total: -67.29 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -2.03 Total: -39.71 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Atomic # 16 Polarization: 30.47 SS G_CDS: -0.69 Total: 29.77 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.06 -10.33 -46.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269140877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.047 kcal (2) G-P(sol) polarization free energy of solvation -36.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds