Wall clock time and date at job start Wed Apr 1 2020 03:34:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 108.57867 * 2 1 4 4 C 1.50706 * 109.46830 * 300.69598 * 3 2 1 5 5 O 1.21284 * 119.99588 * 0.02562 * 4 3 2 6 6 N 1.34771 * 119.99767 * 179.97438 * 4 3 2 7 7 C 1.46506 * 119.99635 * 180.02562 * 6 4 3 8 8 H 1.09000 * 109.47212 * 325.00311 * 7 6 4 9 9 C 1.53005 * 109.46831 * 205.00143 * 7 6 4 10 10 N 1.46502 * 109.47209 * 55.00453 * 9 7 6 11 11 C 1.36934 * 119.99993 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99681 * 359.97438 * 11 10 9 13 13 C 1.38808 * 119.99749 * 180.02562 * 11 10 9 14 14 N 1.31619 * 120.00389 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 119.99883 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47221 * 89.99767 * 15 13 11 17 17 H 1.48500 * 109.47354 * 209.99802 * 15 13 11 18 18 H 1.48503 * 109.47355 * 329.99746 * 15 13 11 19 19 C 1.53002 * 109.47035 * 85.00546 * 7 6 4 20 20 C 1.53006 * 117.49719 * 8.61621 * 19 7 6 21 21 C 1.53001 * 117.49652 * 299.99663 * 19 7 6 22 22 C 1.53200 * 108.64817 * 117.99121 * 2 1 3 23 23 C 1.55562 * 106.24126 * 148.48212 * 22 2 1 24 24 S 1.83899 * 99.64105 * 323.01692 * 23 22 2 25 25 O 1.42100 * 111.46626 * 144.08932 * 24 23 22 26 26 O 1.42100 * 111.46482 * 283.93422 * 24 23 22 27 27 N 1.46447 * 108.64974 * 242.00153 * 2 1 3 28 28 H 1.08993 * 109.47075 * 59.30621 * 1 2 3 29 29 H 1.08999 * 109.46618 * 179.30345 * 1 2 3 30 30 H 1.09002 * 109.46882 * 299.30026 * 1 2 3 31 31 H 1.08999 * 109.46918 * 180.70404 * 3 2 1 32 32 H 1.08994 * 109.47233 * 60.69422 * 3 2 1 33 33 H 0.97000 * 120.00547 * 0.02562 * 6 4 3 34 34 H 1.09000 * 109.46692 * 175.00236 * 9 7 6 35 35 H 1.08993 * 109.47016 * 295.00161 * 9 7 6 36 36 H 0.97000 * 119.99673 * 359.97438 * 10 9 7 37 37 H 0.96996 * 120.00543 * 180.02562 * 14 13 11 38 38 H 1.08994 * 115.54955 * 154.32810 * 19 7 6 39 39 H 1.08995 * 117.49684 * 0.02562 * 20 19 7 40 40 H 1.09000 * 117.49162 * 145.02229 * 20 19 7 41 41 H 1.09000 * 117.49938 * 214.97982 * 21 19 7 42 42 H 1.09001 * 117.49931 * 0.02562 * 21 19 7 43 43 H 1.08999 * 110.10278 * 267.67872 * 22 2 1 44 44 H 1.09007 * 110.09815 * 29.29093 * 22 2 1 45 45 H 1.09001 * 111.36604 * 80.61671 * 23 22 2 46 46 H 1.08999 * 111.36955 * 205.35779 * 23 22 2 47 47 H 0.96993 * 126.08612 * 57.30443 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0175 1.4503 0.0000 4 6 1.4900 2.1575 -1.2218 5 8 0.7925 1.5604 -2.0142 6 7 1.7926 3.4537 -1.4333 7 6 1.2793 4.1413 -2.6208 8 1 1.2439 3.4438 -3.4577 9 6 2.2009 5.3115 -2.9707 10 7 3.5732 4.8227 -3.1263 11 6 4.5793 5.6961 -3.4426 12 1 4.3610 6.7451 -3.5778 13 6 5.8794 5.2329 -3.5905 14 7 6.1453 3.9543 -3.4262 15 14 7.2518 6.4241 -4.0228 16 1 7.8502 6.9637 -2.7753 17 1 8.2952 5.7143 -4.8055 18 1 6.7011 7.5415 -4.8312 19 6 -0.1286 4.6684 -2.3362 20 6 -0.6375 4.5821 -0.8958 21 6 -1.2042 3.6456 -1.9648 22 6 2.0199 -0.6813 1.2818 23 6 3.3654 -1.3731 0.9198 24 16 2.9741 -1.9335 -0.7874 25 8 4.1109 -1.8490 -1.6358 26 8 2.1273 -3.0746 -0.7789 27 7 1.9983 -0.6514 -1.2252 28 1 -0.3633 0.5245 -0.8836 29 1 -0.3632 -1.0276 -0.0125 30 1 -0.3633 0.5029 0.8962 31 1 3.1073 1.4673 -0.0126 32 1 1.6565 1.9550 0.8961 33 1 2.3501 3.9313 -0.7994 34 1 1.8699 5.7682 -3.9034 35 1 2.1673 6.0519 -2.1716 36 1 3.7690 3.8805 -3.0052 37 1 7.0538 3.6307 -3.5292 38 1 -0.4366 5.5301 -2.9284 39 1 0.0309 4.1502 -0.1510 40 1 -1.2803 5.3873 -0.5402 41 1 -2.2198 3.8345 -2.3124 42 1 -0.9086 2.5972 -1.9228 43 1 2.1790 0.0615 2.0635 44 1 1.2937 -1.4241 1.6122 45 1 4.1915 -0.6620 0.9249 46 1 3.5680 -2.2171 1.5792 47 1 1.7799 -0.3866 -2.1323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269140877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:28 Heat of formation + Delta-G solvation = -84.546917 kcal Electronic energy + Delta-G solvation = -30080.876668 eV Core-core repulsion = 26005.285994 eV Total energy + Delta-G solvation = -4075.590674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.50528 -39.50672 -38.13388 -37.68242 -36.89737 -36.52112 -34.73616 -33.07932 -32.60255 -31.51010 -29.99994 -28.42699 -25.92107 -24.95727 -23.42304 -22.95893 -22.26312 -21.10868 -20.81063 -20.46098 -19.25107 -18.48626 -17.95786 -17.41512 -17.21597 -16.88599 -16.73345 -16.43594 -16.07724 -15.46354 -15.32750 -15.20326 -15.18711 -14.65801 -14.49655 -14.40360 -14.04753 -13.76715 -13.44976 -13.20634 -13.13400 -13.05194 -13.04663 -12.82781 -12.73582 -12.64006 -12.55762 -12.39688 -12.23499 -12.08823 -12.05129 -11.85010 -11.79267 -11.37990 -11.19529 -10.97494 -10.76990 -10.39214 -10.30037 -9.80737 -9.00018 -7.93492 -5.22988 -0.63230 1.48250 1.49926 1.58140 1.72690 1.81012 2.34350 2.56357 2.73022 3.02289 3.09892 3.39409 3.41222 3.60361 3.67597 3.74591 3.94560 4.05775 4.11640 4.16940 4.22917 4.34038 4.47781 4.53951 4.58465 4.66336 4.70007 4.76199 4.77753 4.88631 4.91089 4.92516 4.99176 5.11557 5.13780 5.20603 5.32171 5.34569 5.43475 5.51145 5.62456 5.79347 6.26721 6.27666 6.73830 7.34812 7.45478 8.08810 8.32565 9.29014 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009543 B = 0.003961 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2933.466818 B = 7067.934096 C = 9338.867631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.153 3.847 3 C -0.151 4.151 4 C 0.512 3.488 5 O -0.560 6.560 6 N -0.707 5.707 7 C 0.181 3.819 8 H 0.057 0.943 9 C 0.150 3.850 10 N -0.741 5.741 11 C -0.244 4.244 12 H 0.077 0.923 13 C -0.071 4.071 14 N -0.967 5.967 15 Si 0.970 3.030 16 H -0.283 1.283 17 H -0.301 1.301 18 H -0.271 1.271 19 C -0.172 4.172 20 C -0.155 4.155 21 C -0.187 4.187 22 C -0.114 4.114 23 C -0.555 4.555 24 S 2.545 3.455 25 O -1.019 7.019 26 O -0.998 6.998 27 N -1.088 6.088 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.144 0.856 33 H 0.408 0.592 34 H 0.028 0.972 35 H 0.039 0.961 36 H 0.375 0.625 37 H 0.249 0.751 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.154 0.846 44 H 0.116 0.884 45 H 0.160 0.840 46 H 0.175 0.825 47 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.630 -5.490 17.532 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.063 3.937 3 C -0.192 4.192 4 C 0.301 3.699 5 O -0.440 6.440 6 N -0.358 5.358 7 C 0.076 3.924 8 H 0.075 0.925 9 C 0.023 3.977 10 N -0.384 5.384 11 C -0.376 4.376 12 H 0.095 0.905 13 C -0.263 4.263 14 N -0.617 5.617 15 Si 0.800 3.200 16 H -0.210 1.210 17 H -0.228 1.228 18 H -0.196 1.196 19 C -0.192 4.192 20 C -0.192 4.192 21 C -0.224 4.224 22 C -0.153 4.153 23 C -0.691 4.691 24 S 2.646 3.354 25 O -1.009 7.009 26 O -0.988 6.988 27 N -0.855 5.855 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.122 0.878 32 H 0.161 0.839 33 H 0.244 0.756 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.207 0.793 37 H 0.058 0.942 38 H 0.131 0.869 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.172 0.828 44 H 0.135 0.865 45 H 0.178 0.822 46 H 0.192 0.808 47 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -13.774 -6.604 16.367 22.388 hybrid contribution 1.225 0.954 -0.824 1.757 sum -12.550 -5.650 15.543 20.760 Atomic orbital electron populations 1.22471 0.92810 1.02795 1.04414 1.20584 0.96961 0.91893 0.84308 1.22391 1.03620 0.95659 0.97500 1.21062 0.79350 0.81292 0.88195 1.90503 1.39458 1.65765 1.48324 1.45989 1.52560 1.11682 1.25580 1.20358 0.91339 0.92948 0.87804 0.92489 1.21016 0.83801 0.94549 0.98326 1.42499 1.03056 1.07995 1.84888 1.19598 0.88163 0.91489 1.38334 0.90507 1.25508 0.99822 0.97446 1.03559 1.69821 1.19559 1.14229 1.58095 0.85191 0.79106 0.78074 0.77651 1.20998 1.22837 1.19621 1.22575 0.93557 1.02183 1.00894 1.22947 1.02951 1.02238 0.91109 1.23283 0.97558 0.97783 1.03785 1.22744 0.93169 1.03038 0.96352 1.30626 1.07089 1.13445 1.17896 1.06801 0.73966 0.74252 0.80406 1.93571 1.53351 1.87004 1.66958 1.93576 1.66751 1.50690 1.87738 1.55062 1.67440 1.49406 1.13590 0.91010 0.92640 0.89465 0.87809 0.83857 0.75585 0.95391 0.94268 0.79275 0.94170 0.86863 0.88361 0.87832 0.88857 0.87910 0.82850 0.86517 0.82207 0.80773 0.72728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 8.15 71.98 0.59 -2.19 16 2 C 0.15 2.49 0.83 3.68 0.00 2.49 16 3 C -0.15 -2.44 4.70 29.85 0.14 -2.30 16 4 C 0.51 12.95 6.15 87.66 0.54 13.49 16 5 O -0.56 -17.00 8.83 -3.04 -0.03 -17.03 16 6 N -0.71 -18.91 3.06 -442.51 -1.35 -20.26 16 7 C 0.18 5.63 2.59 44.99 0.12 5.74 16 8 H 0.06 2.15 7.58 -2.39 -0.02 2.14 16 9 C 0.15 5.53 5.80 86.38 0.50 6.03 16 10 N -0.74 -35.72 5.43 -343.46 -1.87 -37.58 16 11 C -0.24 -13.14 9.99 84.03 0.84 -12.30 16 12 H 0.08 3.95 7.83 -2.91 -0.02 3.93 16 13 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 14 N -0.97 -58.62 13.06 21.65 0.28 -58.34 16 15 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 C -0.17 -4.28 5.71 -10.79 -0.06 -4.34 16 20 C -0.16 -3.07 9.73 30.60 0.30 -2.77 16 21 C -0.19 -4.36 9.82 30.60 0.30 -4.06 16 22 C -0.11 -0.89 5.56 31.54 0.18 -0.71 16 23 C -0.56 -5.72 7.66 72.87 0.56 -5.16 16 24 S 2.55 61.99 6.46 -56.49 -0.36 61.62 16 25 O -1.02 -36.34 18.14 -127.79 -2.32 -38.66 16 26 O -1.00 -30.00 18.15 -127.79 -2.32 -32.32 16 27 N -1.09 -26.66 5.65 -152.02 -0.86 -27.52 16 28 H 0.07 1.65 5.31 -2.39 -0.01 1.63 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.14 1.10 8.04 -2.39 -0.02 1.08 16 33 H 0.41 10.22 8.60 -92.71 -0.80 9.43 16 34 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.37 19.61 7.33 -92.71 -0.68 18.93 16 37 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 38 H 0.11 2.66 8.11 -2.39 -0.02 2.64 16 39 H 0.10 1.81 6.66 -2.39 -0.02 1.80 16 40 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 42 H 0.10 2.79 4.97 -2.39 -0.01 2.78 16 43 H 0.15 0.09 7.71 -2.39 -0.02 0.08 16 44 H 0.12 0.63 7.83 -2.38 -0.02 0.61 16 45 H 0.16 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.17 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.43 12.73 7.26 -93.12 -0.68 12.06 16 Total: -1.00 -83.23 380.68 -3.47 -86.70 By element: Atomic # 1 Polarization: 46.70 SS G_CDS: -1.14 Total: 45.57 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 4.46 Total: -9.60 kcal Atomic # 7 Polarization: -139.91 SS G_CDS: -3.80 Total: -143.71 kcal Atomic # 8 Polarization: -83.35 SS G_CDS: -4.66 Total: -88.01 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 61.99 SS G_CDS: -0.36 Total: 61.62 kcal Total: -83.23 -3.47 -86.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269140877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.153 kcal (2) G-P(sol) polarization free energy of solvation -83.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds