Wall clock time and date at job start Wed Apr 1 2020 04:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29938 * 125.38005 * 2 1 4 4 C 1.36066 * 108.47722 * 179.97438 * 3 2 1 5 5 C 1.47422 * 126.44590 * 180.02562 * 4 3 2 6 6 O 1.21613 * 119.99627 * 180.02562 * 5 4 3 7 7 N 1.34778 * 119.99942 * 0.03183 * 5 4 3 8 8 C 1.47725 * 134.38951 * 180.02562 * 7 5 4 9 9 C 1.53289 * 85.85381 * 155.92030 * 8 7 5 10 10 C 1.52334 * 128.81642 * 243.37727 * 9 8 7 11 11 C 1.52330 * 128.82129 * 163.01356 * 9 8 7 12 12 H 1.08994 * 117.51709 * 225.38249 * 11 9 8 13 13 C 1.50702 * 117.51365 * 10.45400 * 11 9 8 14 14 O 1.21283 * 119.99892 * 0.02562 * 13 11 9 15 15 N 1.34772 * 120.00146 * 180.02562 * 13 11 9 16 16 C 1.47581 * 134.49721 * 180.02562 * 15 13 11 17 17 C 1.53940 * 86.12007 * 155.35572 * 16 15 13 18 18 C 1.50703 * 113.74172 * 137.95170 * 17 16 15 19 19 H 1.07994 * 119.99603 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99838 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00380 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99848 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 239.99776 * 22 20 18 25 25 H 1.48500 * 109.47454 * 119.99769 * 22 20 18 26 26 C 1.47588 * 134.49111 * 359.97438 * 15 13 11 27 27 C 1.47721 * 134.39566 * 0.02562 * 7 5 4 28 28 C 1.36094 * 107.10147 * 0.26590 * 4 3 2 29 29 O 1.34047 * 125.37821 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47160 * 89.99614 * 1 2 3 31 31 H 1.08999 * 109.47058 * 209.99010 * 1 2 3 32 32 H 1.08997 * 109.47158 * 329.99946 * 1 2 3 33 33 H 1.09001 * 113.81307 * 41.68633 * 8 7 5 34 34 H 1.08995 * 113.81124 * 270.15102 * 8 7 5 35 35 H 1.08995 * 117.51390 * 134.66266 * 10 9 8 36 36 H 1.08991 * 117.51240 * 349.53851 * 10 9 8 37 37 H 1.09005 * 113.76454 * 41.05367 * 16 15 13 38 38 H 1.09002 * 113.87038 * 269.67365 * 16 15 13 39 39 H 1.08998 * 113.74376 * 269.15523 * 17 16 15 40 40 H 0.97001 * 119.99667 * 0.02562 * 21 20 18 41 41 H 1.09000 * 113.76662 * 90.33888 * 26 15 13 42 42 H 1.09003 * 113.76968 * 318.94602 * 26 15 13 43 43 H 1.08993 * 113.81032 * 89.84553 * 27 7 5 44 44 H 1.09004 * 113.80720 * 318.31134 * 27 7 5 45 45 H 1.08001 * 126.52022 * 179.73633 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7440 1.5438 0.0013 6 8 5.8605 1.0618 0.0013 7 7 4.5878 2.8825 0.0021 8 6 5.5167 4.0312 0.0025 9 6 4.3614 4.8231 -0.6205 10 6 4.2844 5.4792 -1.9931 11 6 4.1853 6.3325 -0.7252 12 1 3.2092 6.7446 -0.4696 13 6 5.3684 7.1975 -0.3738 14 8 6.4109 6.6859 -0.0240 15 7 5.2679 8.5393 -0.4484 16 6 6.1904 9.6617 -0.1890 17 6 5.3168 10.4687 -1.1664 18 6 5.0424 11.8792 -0.7121 19 1 5.4494 12.2340 0.2232 20 6 4.2717 12.7165 -1.4905 21 7 3.7765 12.2845 -2.6297 22 14 3.9322 14.4651 -0.9278 23 1 4.5985 14.7031 0.3779 24 1 2.4678 14.6617 -0.7789 25 1 4.4600 15.4205 -1.9347 26 6 4.1912 9.4767 -0.8230 27 6 3.4197 3.7868 0.0029 28 6 3.5659 -0.6971 -0.0051 29 8 2.2831 -1.0929 0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8901 0.5137 32 1 -0.3633 0.8899 0.5138 33 1 6.3723 3.9056 -0.6610 34 1 5.7957 4.3712 0.9998 35 1 3.3731 5.3300 -2.5721 36 1 5.2051 5.5436 -2.5728 37 1 7.2051 9.4880 -0.5474 38 1 6.1588 10.0308 0.8361 39 1 5.6512 10.4134 -2.2023 40 1 3.9531 11.3767 -2.9221 41 1 3.5700 9.7902 0.0160 42 1 3.6101 9.1554 -1.6875 43 1 3.0704 4.0534 1.0003 44 1 2.6157 3.4676 -0.6603 45 1 4.4361 -1.3368 -0.0103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269444979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:00 Heat of formation + Delta-G solvation = 55.330664 kcal Electronic energy + Delta-G solvation = -28981.425917 eV Core-core repulsion = 24776.456839 eV Total energy + Delta-G solvation = -4204.969078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.82169 -40.74723 -39.44479 -38.32645 -36.96490 -35.30850 -34.47100 -32.90094 -32.65052 -29.34370 -28.61443 -27.89676 -26.47939 -25.48270 -25.02162 -23.84692 -23.18876 -21.89589 -20.76755 -20.10151 -19.00197 -18.17536 -17.85472 -17.33568 -17.29565 -16.82650 -16.57518 -15.95774 -15.92491 -15.28925 -14.94182 -14.57592 -14.35130 -14.14649 -13.97759 -13.86075 -13.63975 -13.59008 -13.18498 -13.11909 -13.01371 -12.53127 -12.17771 -11.91305 -11.71112 -11.64759 -11.52833 -11.27601 -11.04351 -10.91057 -10.81970 -10.71067 -10.48124 -10.21778 -9.99189 -9.70778 -9.45792 -9.42243 -8.84123 -8.65247 -8.56261 -8.00692 -6.54451 -4.27911 0.73358 1.62413 2.14583 2.48083 2.82595 3.04841 3.30479 3.37401 3.38993 3.41019 3.52961 3.74893 4.08983 4.16663 4.37929 4.40865 4.44645 4.74205 4.79927 4.85168 5.01226 5.03619 5.15076 5.15279 5.19729 5.23531 5.34734 5.37248 5.49562 5.52858 5.60926 5.73590 5.79392 5.83219 5.87405 5.91387 6.00954 6.13324 6.22369 6.37621 6.42190 6.59363 7.07086 7.25380 7.45245 7.87906 7.95239 8.25613 8.34291 8.59881 8.69238 9.45053 10.85115 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022165 B = 0.001908 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.956885 B =14672.450068 C =15581.953557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.195 3.805 3 N -0.459 5.459 4 C -0.063 4.063 5 C 0.623 3.377 6 O -0.540 6.540 7 N -0.627 5.627 8 C 0.168 3.832 9 C -0.155 4.155 10 C -0.111 4.111 11 C -0.152 4.152 12 H 0.127 0.873 13 C 0.553 3.447 14 O -0.560 6.560 15 N -0.634 5.634 16 C 0.113 3.887 17 C 0.013 3.987 18 C -0.596 4.596 19 H 0.057 0.943 20 C 0.024 3.976 21 N -0.904 5.904 22 Si 1.074 2.926 23 H -0.288 1.288 24 H -0.286 1.286 25 H -0.286 1.286 26 C 0.096 3.904 27 C 0.158 3.842 28 C 0.010 3.990 29 O -0.198 6.198 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.271 0.729 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.855 -23.285 3.883 25.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.014 4.014 3 N -0.189 5.189 4 C -0.183 4.183 5 C 0.412 3.588 6 O -0.417 6.417 7 N -0.361 5.361 8 C 0.047 3.953 9 C -0.157 4.157 10 C -0.149 4.149 11 C -0.174 4.174 12 H 0.144 0.856 13 C 0.342 3.658 14 O -0.441 6.441 15 N -0.367 5.367 16 C -0.009 4.009 17 C -0.007 4.007 18 C -0.634 4.634 19 H 0.076 0.924 20 C -0.181 4.181 21 N -0.539 5.539 22 Si 0.902 3.098 23 H -0.214 1.214 24 H -0.213 1.213 25 H -0.212 1.212 26 C -0.027 4.027 27 C 0.036 3.964 28 C -0.064 4.064 29 O -0.084 6.084 30 H 0.114 0.886 31 H 0.109 0.891 32 H 0.122 0.878 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -8.683 -22.216 3.663 24.132 hybrid contribution 0.933 -2.066 0.525 2.327 sum -7.750 -24.282 4.188 25.831 Atomic orbital electron populations 1.20329 0.80764 1.05456 1.05042 1.26411 0.96731 0.78299 0.99972 1.70824 1.00693 1.29748 1.17671 1.21717 0.92038 0.92833 1.11720 1.16252 0.86119 0.79947 0.76526 1.90838 1.24526 1.74305 1.52069 1.49641 1.11919 1.03204 1.71305 1.22559 0.92801 0.78517 1.01383 1.22566 0.99141 0.92085 1.01878 1.22804 1.04311 0.98750 0.89007 1.22126 0.99764 0.90972 1.04554 0.85561 1.19203 0.87909 0.81206 0.77489 1.90636 1.30642 1.73098 1.49690 1.50328 1.18422 1.02922 1.65064 1.23357 0.94537 0.82417 1.00597 1.20642 0.90534 0.94066 0.95413 1.21872 1.36427 0.96205 1.08875 0.92445 1.25884 0.93262 1.05061 0.93923 1.70761 1.42443 1.20057 1.20630 0.83460 0.76515 0.74449 0.75363 1.21371 1.21254 1.21234 1.23867 0.93207 0.86897 0.98680 1.22663 0.89620 0.83359 1.00806 1.25267 0.84823 0.95593 1.00678 1.84391 1.16704 1.37970 1.69316 0.88606 0.89110 0.87779 0.89471 0.88416 0.87210 0.87714 0.91984 0.90568 0.92763 0.91861 0.90261 0.92033 0.89051 0.88701 0.75289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 36.01 0.38 0.18 16 2 C 0.19 1.56 8.30 -13.08 -0.11 1.45 16 3 N -0.46 -4.86 9.74 -7.65 -0.07 -4.94 16 4 C -0.06 -0.75 6.94 -83.02 -0.58 -1.32 16 5 C 0.62 8.94 8.04 -12.52 -0.10 8.84 16 6 O -0.54 -9.13 17.62 5.27 0.09 -9.03 16 7 N -0.63 -8.48 3.61 -183.05 -0.66 -9.14 16 8 C 0.17 2.40 7.27 -3.22 -0.02 2.38 16 9 C -0.16 -1.97 3.03 -155.02 -0.47 -2.44 16 10 C -0.11 -1.36 10.24 -26.99 -0.28 -1.63 16 11 C -0.15 -2.13 5.94 -92.03 -0.55 -2.67 16 12 H 0.13 1.57 8.14 -51.93 -0.42 1.14 16 13 C 0.55 10.13 7.84 -10.99 -0.09 10.05 16 14 O -0.56 -11.62 15.86 5.55 0.09 -11.54 16 15 N -0.63 -12.31 3.61 -178.43 -0.64 -12.95 16 16 C 0.11 2.30 8.39 -2.98 -0.02 2.28 16 17 C 0.01 0.29 3.09 -90.86 -0.28 0.01 16 18 C -0.60 -15.04 8.77 -34.44 -0.30 -15.34 16 19 H 0.06 1.45 7.81 -52.49 -0.41 1.04 16 20 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 21 N -0.90 -24.90 13.65 55.43 0.76 -24.14 16 22 Si 1.07 23.24 29.90 -169.99 -5.08 18.16 16 23 H -0.29 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.10 1.90 8.12 -2.99 -0.02 1.88 16 27 C 0.16 1.76 7.90 -3.23 -0.03 1.73 16 28 C 0.01 0.09 11.95 29.96 0.36 0.45 16 29 O -0.20 -1.66 10.73 6.53 0.07 -1.59 16 30 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.10 1.44 8.01 -51.93 -0.42 1.03 16 35 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.08 1.52 8.09 -51.93 -0.42 1.10 16 39 H 0.05 1.32 7.61 -51.93 -0.40 0.92 16 40 H 0.27 7.33 7.04 -40.82 -0.29 7.04 16 41 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.09 0.98 7.50 -51.93 -0.39 0.59 16 45 H 0.23 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 391.47 15.07 5.90 5.90 Total: -1.00 -32.98 391.47 -7.95 -40.93 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.18 Total: 1.98 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -2.21 Total: 6.36 kcal Atomic # 7 Polarization: -50.55 SS G_CDS: -0.62 Total: -51.17 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.25 Total: -22.16 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.08 Total: 18.16 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.98 -7.95 -40.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269444979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.261 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds