Wall clock time and date at job start Wed Apr 1 2020 04:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29938 * 125.38005 * 2 1 4 4 C 1.36066 * 108.47722 * 179.97438 * 3 2 1 5 5 C 1.47422 * 126.44590 * 180.02562 * 4 3 2 6 6 O 1.21613 * 119.99627 * 180.02562 * 5 4 3 7 7 N 1.34778 * 119.99942 * 0.03183 * 5 4 3 8 8 C 1.47725 * 134.38951 * 180.02562 * 7 5 4 9 9 C 1.53289 * 85.85381 * 155.92030 * 8 7 5 10 10 C 1.52334 * 128.81642 * 243.37727 * 9 8 7 11 11 C 1.52330 * 128.82129 * 163.01356 * 9 8 7 12 12 H 1.08994 * 117.51709 * 225.38249 * 11 9 8 13 13 C 1.50702 * 117.51365 * 10.45400 * 11 9 8 14 14 O 1.21283 * 119.99892 * 0.02562 * 13 11 9 15 15 N 1.34772 * 120.00146 * 180.02562 * 13 11 9 16 16 C 1.47581 * 134.49721 * 180.02562 * 15 13 11 17 17 C 1.53940 * 86.12007 * 155.35572 * 16 15 13 18 18 C 1.50703 * 113.74172 * 137.95170 * 17 16 15 19 19 H 1.07994 * 119.99603 * 0.02562 * 18 17 16 20 20 C 1.37875 * 119.99838 * 180.02562 * 18 17 16 21 21 N 1.31513 * 120.00380 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99848 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 239.99776 * 22 20 18 25 25 H 1.48500 * 109.47454 * 119.99769 * 22 20 18 26 26 C 1.47588 * 134.49111 * 359.97438 * 15 13 11 27 27 C 1.47721 * 134.39566 * 0.02562 * 7 5 4 28 28 C 1.36094 * 107.10147 * 0.26590 * 4 3 2 29 29 O 1.34047 * 125.37821 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47160 * 89.99614 * 1 2 3 31 31 H 1.08999 * 109.47058 * 209.99010 * 1 2 3 32 32 H 1.08997 * 109.47158 * 329.99946 * 1 2 3 33 33 H 1.09001 * 113.81307 * 41.68633 * 8 7 5 34 34 H 1.08995 * 113.81124 * 270.15102 * 8 7 5 35 35 H 1.08995 * 117.51390 * 134.66266 * 10 9 8 36 36 H 1.08991 * 117.51240 * 349.53851 * 10 9 8 37 37 H 1.09005 * 113.76454 * 41.05367 * 16 15 13 38 38 H 1.09002 * 113.87038 * 269.67365 * 16 15 13 39 39 H 1.08998 * 113.74376 * 269.15523 * 17 16 15 40 40 H 0.97001 * 119.99667 * 0.02562 * 21 20 18 41 41 H 1.09000 * 113.76662 * 90.33888 * 26 15 13 42 42 H 1.09003 * 113.76968 * 318.94602 * 26 15 13 43 43 H 1.08993 * 113.81032 * 89.84553 * 27 7 5 44 44 H 1.09004 * 113.80720 * 318.31134 * 27 7 5 45 45 H 1.08001 * 126.52022 * 179.73633 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6638 0.0006 5 6 4.7440 1.5438 0.0013 6 8 5.8605 1.0618 0.0013 7 7 4.5878 2.8825 0.0021 8 6 5.5167 4.0312 0.0025 9 6 4.3614 4.8231 -0.6205 10 6 4.2844 5.4792 -1.9931 11 6 4.1853 6.3325 -0.7252 12 1 3.2092 6.7446 -0.4696 13 6 5.3684 7.1975 -0.3738 14 8 6.4109 6.6859 -0.0240 15 7 5.2679 8.5393 -0.4484 16 6 6.1904 9.6617 -0.1890 17 6 5.3168 10.4687 -1.1664 18 6 5.0424 11.8792 -0.7121 19 1 5.4494 12.2340 0.2232 20 6 4.2717 12.7165 -1.4905 21 7 3.7765 12.2845 -2.6297 22 14 3.9322 14.4651 -0.9278 23 1 4.5985 14.7031 0.3779 24 1 2.4678 14.6617 -0.7789 25 1 4.4600 15.4205 -1.9347 26 6 4.1912 9.4767 -0.8230 27 6 3.4197 3.7868 0.0029 28 6 3.5659 -0.6971 -0.0051 29 8 2.2831 -1.0929 0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8901 0.5137 32 1 -0.3633 0.8899 0.5138 33 1 6.3723 3.9056 -0.6610 34 1 5.7957 4.3712 0.9998 35 1 3.3731 5.3300 -2.5721 36 1 5.2051 5.5436 -2.5728 37 1 7.2051 9.4880 -0.5474 38 1 6.1588 10.0308 0.8361 39 1 5.6512 10.4134 -2.2023 40 1 3.9531 11.3767 -2.9221 41 1 3.5700 9.7902 0.0160 42 1 3.6101 9.1554 -1.6875 43 1 3.0704 4.0534 1.0003 44 1 2.6157 3.4676 -0.6603 45 1 4.4361 -1.3368 -0.0103 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269444979.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:04:59 Heat of formation + Delta-G solvation = 32.785513 kcal Electronic energy + Delta-G solvation = -28982.403548 eV Core-core repulsion = 24776.456839 eV Total energy + Delta-G solvation = -4205.946709 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.49597 -41.89766 -40.88027 -39.58422 -38.45798 -36.05832 -35.57548 -34.82987 -33.18290 -30.93050 -29.57650 -28.58811 -27.50783 -27.09148 -26.82317 -24.67419 -24.58517 -22.54938 -22.27748 -21.15664 -20.14032 -19.45567 -19.08364 -18.79446 -18.07645 -18.01275 -17.66457 -17.11548 -17.02390 -16.71660 -16.41338 -15.62662 -15.57678 -15.25608 -15.02646 -15.02168 -14.87461 -14.48058 -14.15905 -14.01796 -13.88699 -13.59392 -13.45798 -13.27524 -13.26793 -13.12017 -12.79187 -12.45504 -12.38336 -12.12241 -12.02343 -11.87441 -11.80035 -11.54240 -11.44883 -11.09766 -11.00992 -10.54451 -10.43003 -10.18766 -9.84868 -9.63221 -8.59072 -6.32363 -0.01952 0.89740 1.30670 1.49870 1.62440 1.67108 1.68723 1.85581 1.86477 2.08033 2.61714 2.62972 2.76898 2.96276 3.19530 3.29983 3.44985 3.59417 3.74013 3.76729 4.10767 4.13178 4.28457 4.28751 4.38301 4.39283 4.42471 4.46078 4.48402 4.53754 4.57409 4.62068 4.68898 4.70949 4.73122 4.73493 4.78635 4.80782 4.84915 4.91692 5.02628 5.25079 5.42022 6.02932 6.22321 6.36658 6.43911 6.61522 6.82021 6.83517 7.10786 7.46765 8.81756 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022165 B = 0.001908 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.956885 B =14672.450068 C =15581.953557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.203 3.797 3 N -0.482 5.482 4 C -0.096 4.096 5 C 0.617 3.383 6 O -0.578 6.578 7 N -0.630 5.630 8 C 0.160 3.840 9 C -0.148 4.148 10 C -0.099 4.099 11 C -0.157 4.157 12 H 0.151 0.849 13 C 0.548 3.452 14 O -0.589 6.589 15 N -0.636 5.636 16 C 0.115 3.885 17 C -0.001 4.001 18 C -0.602 4.602 19 H 0.053 0.947 20 C -0.021 4.021 21 N -0.930 5.930 22 Si 1.117 2.883 23 H -0.274 1.274 24 H -0.279 1.279 25 H -0.285 1.285 26 C 0.115 3.885 27 C 0.172 3.828 28 C 0.027 3.973 29 O -0.196 6.196 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.143 0.857 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.032 0.968 40 H 0.262 0.738 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.610 -24.341 4.225 27.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.006 4.006 3 N -0.212 5.212 4 C -0.214 4.214 5 C 0.408 3.592 6 O -0.459 6.459 7 N -0.363 5.363 8 C 0.038 3.962 9 C -0.150 4.150 10 C -0.136 4.136 11 C -0.178 4.178 12 H 0.168 0.832 13 C 0.339 3.661 14 O -0.471 6.471 15 N -0.369 5.369 16 C -0.007 4.007 17 C -0.020 4.020 18 C -0.641 4.641 19 H 0.072 0.928 20 C -0.221 4.221 21 N -0.566 5.566 22 Si 0.940 3.060 23 H -0.199 1.199 24 H -0.205 1.205 25 H -0.212 1.212 26 C -0.008 4.008 27 C 0.051 3.949 28 C -0.048 4.048 29 O -0.082 6.082 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.161 0.839 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.050 0.950 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.123 0.877 44 H 0.129 0.871 45 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -11.458 -23.270 4.012 26.247 hybrid contribution 1.852 -1.821 0.431 2.633 sum -9.606 -25.091 4.443 27.232 Atomic orbital electron populations 1.20633 0.77478 1.06883 1.06523 1.27371 0.98145 0.77505 0.97577 1.70769 1.00224 1.30916 1.19323 1.21472 0.91886 0.93383 1.14682 1.16664 0.86565 0.80269 0.75711 1.90799 1.26174 1.75009 1.53964 1.49733 1.12538 1.03136 1.70891 1.22473 0.93172 0.79889 1.00668 1.22561 0.98730 0.91306 1.02357 1.22965 1.05318 0.96777 0.88583 1.22093 0.98611 0.90765 1.06374 0.83189 1.19952 0.88843 0.80850 0.76447 1.90629 1.32297 1.73376 1.50822 1.50295 1.17797 1.03345 1.65474 1.23227 0.94440 0.82851 1.00225 1.20596 0.92812 0.94020 0.94577 1.22142 1.35811 0.97534 1.08568 0.92823 1.27096 0.93081 1.08294 0.93587 1.70863 1.44110 1.19851 1.21799 0.82900 0.76881 0.70686 0.75567 1.19853 1.20452 1.21167 1.23569 0.92346 0.85740 0.99100 1.22736 0.88882 0.81581 1.01681 1.25668 0.85698 0.95012 0.98396 1.84440 1.16400 1.38142 1.69198 0.86910 0.87022 0.86953 0.91374 0.89476 0.83870 0.88939 0.92195 0.90086 0.95036 0.92762 0.89861 0.90872 0.87738 0.87124 0.73200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.19 10.51 71.24 0.75 0.56 16 2 C 0.20 2.74 8.30 88.39 0.73 3.48 16 3 N -0.48 -9.32 9.74 -293.03 -2.85 -12.17 16 4 C -0.10 -2.18 6.94 40.41 0.28 -1.90 16 5 C 0.62 17.88 8.04 86.66 0.70 18.58 16 6 O -0.58 -20.24 17.62 -4.07 -0.07 -20.31 16 7 N -0.63 -16.95 3.61 -851.30 -3.07 -20.02 16 8 C 0.16 4.66 7.27 86.24 0.63 5.29 16 9 C -0.15 -3.57 3.03 -52.39 -0.16 -3.73 16 10 C -0.10 -2.23 10.24 30.43 0.31 -1.92 16 11 C -0.16 -4.11 5.94 -11.71 -0.07 -4.17 16 12 H 0.15 3.25 8.14 -2.39 -0.02 3.23 16 13 C 0.55 19.84 7.84 87.66 0.69 20.52 16 14 O -0.59 -24.79 15.86 -3.04 -0.05 -24.84 16 15 N -0.64 -24.41 3.61 -836.83 -3.02 -27.43 16 16 C 0.11 4.73 8.39 86.48 0.73 5.45 16 17 C 0.00 -0.04 3.09 -10.89 -0.03 -0.07 16 18 C -0.60 -30.43 8.77 25.60 0.22 -30.21 16 19 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 20 C -0.02 -1.07 5.46 84.65 0.46 -0.60 16 21 N -0.93 -51.34 13.65 21.45 0.29 -51.05 16 22 Si 1.12 46.15 29.90 68.60 2.05 48.21 16 23 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 24 H -0.28 -11.13 7.11 99.48 0.71 -10.43 16 25 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16 26 C 0.11 4.45 8.12 86.47 0.70 5.16 16 27 C 0.17 3.52 7.90 86.24 0.68 4.20 16 28 C 0.03 0.45 11.95 67.32 0.80 1.25 16 29 O -0.20 -2.84 10.73 0.44 0.00 -2.84 16 30 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 31 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.09 2.69 8.01 -2.39 -0.02 2.68 16 35 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 38 H 0.08 3.24 8.09 -2.39 -0.02 3.22 16 39 H 0.03 1.57 7.61 -2.39 -0.02 1.56 16 40 H 0.26 14.40 7.04 -92.71 -0.65 13.74 16 41 H 0.08 3.18 8.09 -2.39 -0.02 3.16 16 42 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 43 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.11 1.96 7.50 -2.38 -0.02 1.94 16 45 H 0.25 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -72.77 391.47 1.84 -70.93 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 1.13 Total: 17.62 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 7.42 Total: 21.90 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -8.65 Total: -110.67 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -0.12 Total: -47.99 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.05 Total: 48.21 kcal Total: -72.77 1.84 -70.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269444979.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.719 kcal (2) G-P(sol) polarization free energy of solvation -72.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds