Wall clock time and date at job start Wed Apr 1 2020 03:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41260 * 126.70673 * 2 1 4 4 C 1.36829 * 103.84902 * 179.76706 * 3 2 1 5 5 C 1.47504 * 126.94207 * 180.18614 * 4 3 2 6 6 O 1.21583 * 120.00463 * 0.02562 * 5 4 3 7 7 N 1.34783 * 119.99724 * 180.02562 * 5 4 3 8 8 C 1.48115 * 127.04357 * 354.44686 * 7 5 4 9 9 C 1.53763 * 103.85595 * 218.50444 * 8 7 5 10 10 C 1.54574 * 103.31133 * 323.97708 * 9 8 7 11 11 H 1.09001 * 117.59178 * 241.58063 * 10 9 8 12 12 C 1.52936 * 118.93213 * 84.08387 * 10 9 8 13 13 C 1.47528 * 127.04670 * 174.76259 * 7 5 4 14 14 C 1.50694 * 117.37226 * 295.06423 * 13 7 5 15 15 O 1.21278 * 120.00494 * 146.09090 * 14 13 7 16 16 N 1.34781 * 119.99739 * 326.09820 * 14 13 7 17 17 C 1.47060 * 136.05681 * 4.63943 * 16 14 13 18 18 C 1.53241 * 88.08470 * 207.20759 * 17 16 14 19 19 C 1.50696 * 114.50963 * 220.45976 * 18 17 16 20 20 H 1.07999 * 120.00469 * 93.84336 * 19 18 17 21 21 C 1.37884 * 119.99690 * 273.84703 * 19 18 17 22 22 N 1.31513 * 120.00396 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99855 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.47047 * 59.99787 * 23 21 19 25 25 H 1.48496 * 109.47094 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47079 * 299.99943 * 23 21 19 27 27 C 1.47071 * 136.05784 * 185.01584 * 16 14 13 28 28 O 1.34641 * 106.10613 * 0.23029 * 4 3 2 29 29 N 1.20879 * 111.47593 * 359.97438 * 28 4 3 30 30 H 1.09003 * 109.46782 * 89.99613 * 1 2 3 31 31 H 1.08995 * 109.47329 * 210.00204 * 1 2 3 32 32 H 1.09004 * 109.46759 * 330.00136 * 1 2 3 33 33 H 1.08004 * 128.07643 * 0.03480 * 3 2 1 34 34 H 1.08999 * 110.66255 * 337.67244 * 8 7 5 35 35 H 1.08998 * 110.66354 * 100.78175 * 8 7 5 36 36 H 1.09002 * 111.68123 * 204.92592 * 9 8 7 37 37 H 1.08993 * 109.35471 * 81.93033 * 9 8 7 38 38 H 1.08998 * 117.45292 * 161.18726 * 12 10 9 39 39 H 1.08998 * 117.45539 * 16.41830 * 12 10 9 40 40 H 1.08997 * 113.46925 * 321.93672 * 17 16 14 41 41 H 1.08998 * 113.47067 * 92.38207 * 17 16 14 42 42 H 1.08999 * 114.01629 * 87.71333 * 18 17 16 43 43 H 0.96996 * 120.00304 * 180.02562 * 22 21 19 44 44 H 1.08994 * 113.46543 * 267.62389 * 27 16 14 45 45 H 1.09000 * 113.46736 * 37.99911 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6122 0.6010 0.0054 5 6 4.8870 1.3430 0.0116 6 8 4.8828 2.5588 0.0127 7 7 6.0566 0.6731 0.0160 8 6 6.2455 -0.7915 0.1298 9 6 7.4908 -0.9340 1.0204 10 6 8.3776 0.2549 0.5852 11 1 9.3536 0.0265 0.1570 12 6 8.1322 1.6288 1.2105 13 6 7.4110 1.2489 -0.0851 14 6 7.7739 1.9446 -1.3717 15 8 8.5134 2.9056 -1.3539 16 7 7.2764 1.4987 -2.5424 17 6 6.3209 0.4620 -2.9606 18 6 7.0708 0.3816 -4.2945 19 6 6.1826 0.2386 -5.5035 20 1 5.8733 1.1153 -6.0531 21 6 5.7648 -1.0116 -5.9078 22 7 6.1417 -2.0793 -5.2388 23 14 4.6631 -1.1890 -7.4060 24 1 5.3570 -0.6394 -8.5985 25 1 4.3585 -2.6251 -7.6292 26 1 3.3987 -0.4433 -7.1816 27 6 7.4552 1.8305 -3.9640 28 8 3.4539 -0.7361 0.0029 29 7 2.2848 -1.0433 -0.0026 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 2.0679 2.1747 0.0005 34 1 5.3768 -1.2563 0.5960 35 1 6.4397 -1.2315 -0.8484 36 1 8.0029 -1.8808 0.8482 37 1 7.2001 -0.8360 2.0663 38 1 8.9351 2.3627 1.1421 39 1 7.5383 1.6665 2.1237 40 1 6.3872 -0.4525 -2.3714 41 1 5.2988 0.8278 -3.0586 42 1 7.9091 -0.3151 -4.2909 43 1 5.8481 -2.9588 -5.5235 44 1 6.7384 2.5645 -4.3318 45 1 8.4839 2.0782 -4.2258 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269449736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:03 Heat of formation + Delta-G solvation = 82.167854 kcal Electronic energy + Delta-G solvation = -31628.705327 eV Core-core repulsion = 27424.899997 eV Total energy + Delta-G solvation = -4203.805330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.08908 -41.00572 -39.04502 -38.26666 -36.93583 -35.05011 -33.46338 -32.71485 -31.84399 -30.73721 -29.24272 -28.87340 -25.83443 -25.10396 -24.82839 -23.62093 -23.03162 -22.46722 -21.09724 -20.37430 -19.64783 -18.43995 -17.87995 -17.46756 -16.97026 -16.58171 -16.30420 -15.95426 -15.41482 -14.79698 -14.66633 -14.44309 -14.41341 -14.06082 -13.73753 -13.57147 -13.45336 -13.28856 -13.16827 -12.88093 -12.71250 -12.49585 -12.19973 -12.07167 -11.55363 -11.53433 -11.32448 -11.19962 -11.00534 -10.90745 -10.75748 -10.54454 -10.33343 -10.25893 -10.22223 -9.80995 -9.62961 -9.29470 -9.12252 -8.71790 -8.58939 -7.91374 -6.21755 -4.26755 0.71992 1.93225 2.22701 2.68680 2.90417 3.01956 3.23090 3.28422 3.29880 3.40490 3.69201 3.92777 4.17568 4.30193 4.34543 4.50343 4.68212 4.81691 4.88202 4.95742 5.04025 5.08763 5.08999 5.17756 5.26939 5.40530 5.45065 5.53097 5.57425 5.67191 5.71565 5.76063 5.87185 5.97873 6.05251 6.12229 6.16180 6.25644 6.40220 6.51366 6.62113 6.78033 7.21998 7.50261 7.74545 7.75909 8.03015 8.14370 8.43403 8.69374 8.76598 9.39944 10.88003 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.007435 B = 0.005473 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3765.177165 B = 5114.756320 C = 7519.483749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.010 3.990 3 C -0.151 4.151 4 C -0.072 4.072 5 C 0.624 3.376 6 O -0.501 6.501 7 N -0.573 5.573 8 C 0.089 3.911 9 C -0.104 4.104 10 C -0.133 4.133 11 H 0.130 0.870 12 C -0.112 4.112 13 C 0.059 3.941 14 C 0.575 3.425 15 O -0.554 6.554 16 N -0.632 5.632 17 C 0.103 3.897 18 C 0.036 3.964 19 C -0.518 4.518 20 H 0.063 0.937 21 C 0.070 3.930 22 N -0.885 5.885 23 Si 0.894 3.106 24 H -0.274 1.274 25 H -0.286 1.286 26 H -0.276 1.276 27 C 0.101 3.899 28 O 0.121 5.879 29 N -0.343 5.343 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.183 0.817 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.265 0.735 44 H 0.073 0.927 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.694 -0.492 14.650 15.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.148 4.148 3 C -0.173 4.173 4 C -0.138 4.138 5 C 0.410 3.590 6 O -0.375 6.375 7 N -0.306 5.306 8 C -0.032 4.032 9 C -0.142 4.142 10 C -0.152 4.152 11 H 0.148 0.852 12 C -0.151 4.151 13 C -0.030 4.030 14 C 0.362 3.638 15 O -0.433 6.433 16 N -0.364 5.364 17 C -0.020 4.020 18 C 0.017 3.983 19 C -0.556 4.556 20 H 0.081 0.919 21 C -0.133 4.133 22 N -0.521 5.521 23 Si 0.721 3.279 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.020 4.020 28 O 0.048 5.952 29 N -0.045 5.045 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.200 0.800 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.139 0.861 39 H 0.121 0.879 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.608 -0.718 14.816 15.532 hybrid contribution -0.914 0.606 -0.899 1.418 sum -5.521 -0.112 13.917 14.972 Atomic orbital electron populations 1.20202 0.85275 1.03921 1.03857 1.23622 0.99367 0.88235 1.03538 1.22827 0.89823 1.01762 1.02916 1.24009 0.96772 0.84098 1.08921 1.16107 0.79932 0.85667 0.77248 1.90905 1.85334 1.11566 1.49680 1.47991 1.03142 1.08061 1.71455 1.22934 0.98960 0.79346 1.01989 1.22203 0.94253 0.97780 0.99942 1.23821 0.98911 0.90102 1.02364 0.85169 1.23405 1.01253 0.96228 0.94170 1.21569 0.81608 1.05445 0.94361 1.18562 0.80722 0.82457 0.82070 1.90648 1.39665 1.26807 1.86175 1.49821 1.43327 1.37889 1.05367 1.23596 0.92973 0.88196 0.97216 1.20298 0.96067 0.89913 0.92001 1.20848 1.30468 0.92915 1.11331 0.91926 1.24996 0.95875 0.95783 0.96673 1.69920 1.44296 0.98292 1.39619 0.86622 0.81029 0.77117 0.83106 1.19957 1.21139 1.20133 1.23385 1.00293 1.01320 0.77031 1.85043 1.21299 1.21996 1.66869 1.73728 0.89375 1.24342 1.17064 0.89748 0.90302 0.89779 0.79983 0.88590 0.88725 0.88301 0.90323 0.86138 0.87863 0.92011 0.91610 0.91283 0.92563 0.90913 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.47 36.01 0.38 -0.24 16 2 C 0.01 0.12 7.31 -82.16 -0.60 -0.48 16 3 C -0.15 -1.97 10.91 -38.94 -0.43 -2.39 16 4 C -0.07 -1.07 7.08 -36.32 -0.26 -1.33 16 5 C 0.62 10.51 7.87 -12.48 -0.10 10.41 16 6 O -0.50 -9.91 17.32 5.29 0.09 -9.82 16 7 N -0.57 -8.81 2.08 -158.23 -0.33 -9.14 16 8 C 0.09 1.11 6.22 -2.76 -0.02 1.09 16 9 C -0.10 -1.01 6.83 -25.51 -0.17 -1.18 16 10 C -0.13 -1.60 6.91 -89.30 -0.62 -2.22 16 11 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 12 C -0.11 -1.46 9.84 -26.73 -0.26 -1.72 16 13 C 0.06 0.96 2.37 -131.85 -0.31 0.65 16 14 C 0.57 11.87 7.95 -10.99 -0.09 11.78 16 15 O -0.55 -12.82 17.31 5.56 0.10 -12.72 16 16 N -0.63 -13.40 3.69 -185.41 -0.68 -14.08 16 17 C 0.10 2.21 7.08 -8.65 -0.06 2.15 16 18 C 0.04 0.85 3.76 -91.39 -0.34 0.51 16 19 C -0.52 -13.20 8.84 -34.44 -0.30 -13.51 16 20 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 21 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 22 N -0.88 -23.61 13.26 55.43 0.74 -22.88 16 23 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 27 C 0.10 2.19 8.19 -8.51 -0.07 2.12 16 28 O 0.12 1.76 8.56 15.56 0.13 1.89 16 29 N -0.34 -4.96 12.04 33.52 0.40 -4.56 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.18 2.01 8.06 -52.48 -0.42 1.59 16 34 H 0.10 1.07 5.86 -51.93 -0.30 0.77 16 35 H 0.09 1.33 5.81 -51.93 -0.30 1.03 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.12 1.59 7.88 -51.93 -0.41 1.18 16 39 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.28 5.30 -51.93 -0.27 1.00 16 41 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 42 H 0.07 1.73 8.11 -51.93 -0.42 1.31 16 43 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 44 H 0.07 1.55 8.10 -51.93 -0.42 1.13 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 380.69 15.07 5.74 5.74 Total: -1.00 -32.15 380.69 -8.09 -40.24 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.90 Total: 2.85 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -3.35 Total: 7.36 kcal Atomic # 7 Polarization: -50.78 SS G_CDS: 0.12 Total: -50.65 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: 0.32 Total: -20.65 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.15 -8.09 -40.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269449736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.413 kcal (2) G-P(sol) polarization free energy of solvation -32.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds