Wall clock time and date at job start Wed Apr 1 2020 03:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41271 * 126.70258 * 2 1 4 4 C 1.36826 * 103.84348 * 180.13298 * 3 2 1 5 5 C 1.47513 * 126.94127 * 179.91163 * 4 3 2 6 6 O 1.21584 * 120.00051 * 359.70468 * 5 4 3 7 7 N 1.34779 * 119.99709 * 179.70981 * 5 4 3 8 8 C 1.47722 * 134.38974 * 180.02562 * 7 5 4 9 9 C 1.53292 * 85.85773 * 155.92142 * 8 7 5 10 10 C 1.52324 * 128.81568 * 243.37865 * 9 8 7 11 11 C 1.52317 * 128.82150 * 163.01068 * 9 8 7 12 12 H 1.08997 * 117.52077 * 225.37918 * 11 9 8 13 13 C 1.50699 * 117.51816 * 10.45838 * 11 9 8 14 14 O 1.21280 * 120.00081 * 359.97438 * 13 11 9 15 15 N 1.34781 * 120.00312 * 179.97438 * 13 11 9 16 16 C 1.47580 * 134.49134 * 179.97438 * 15 13 11 17 17 C 1.53952 * 86.11500 * 155.36347 * 16 15 13 18 18 C 1.50695 * 113.74060 * 137.95290 * 17 16 15 19 19 H 1.07995 * 120.00496 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99572 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99951 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 59.99744 * 22 20 18 24 24 H 1.48503 * 109.47261 * 299.99924 * 22 20 18 25 25 H 1.48500 * 109.47454 * 179.97438 * 22 20 18 26 26 C 1.47578 * 134.49101 * 0.02562 * 15 13 11 27 27 C 1.47721 * 134.39638 * 0.02562 * 7 5 4 28 28 O 1.34647 * 106.11272 * 359.64481 * 4 3 2 29 29 N 1.20881 * 111.46870 * 0.24589 * 28 4 3 30 30 H 1.08997 * 109.46495 * 270.24876 * 1 2 3 31 31 H 1.08994 * 109.46930 * 30.24788 * 1 2 3 32 32 H 1.08997 * 109.47150 * 150.25391 * 1 2 3 33 33 H 1.07992 * 128.07633 * 0.02562 * 3 2 1 34 34 H 1.09002 * 113.81654 * 41.68561 * 8 7 5 35 35 H 1.09006 * 113.80890 * 270.15448 * 8 7 5 36 36 H 1.09004 * 117.51618 * 134.66478 * 10 9 8 37 37 H 1.09007 * 117.51668 * 349.53592 * 10 9 8 38 38 H 1.08998 * 113.77108 * 41.06531 * 16 15 13 39 39 H 1.08991 * 113.87349 * 269.67144 * 16 15 13 40 40 H 1.08997 * 113.74240 * 269.15892 * 17 16 15 41 41 H 0.97006 * 119.99995 * 359.97438 * 21 20 18 42 42 H 1.08997 * 113.77175 * 90.33932 * 26 15 13 43 43 H 1.09004 * 113.76848 * 318.93948 * 26 15 13 44 44 H 1.09000 * 113.81035 * 89.84275 * 27 7 5 45 45 H 1.09000 * 113.81093 * 318.31477 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6011 -0.0031 5 6 4.8871 1.3431 -0.0062 6 8 4.8828 2.5589 -0.0117 7 7 6.0566 0.6733 -0.0032 8 6 7.4779 1.0757 -0.0044 9 6 7.7515 -0.2951 0.6250 10 6 8.3235 -0.6176 1.9994 11 6 9.0700 -1.0498 0.7339 12 1 9.0653 -2.1106 0.4832 13 6 10.3306 -0.3037 0.3801 14 8 10.2704 0.8541 0.0242 15 7 11.5251 -0.9231 0.4592 16 6 12.9198 -0.5173 0.1984 17 6 13.3179 -1.6322 1.1827 18 6 14.5073 -2.4414 0.7340 19 1 14.9943 -2.2121 -0.2022 20 6 14.9738 -3.4746 1.5189 21 7 14.3805 -3.7542 2.6587 22 14 16.4486 -4.4772 0.9631 23 1 17.6250 -3.5840 0.8095 24 1 16.1452 -5.1244 -0.3386 25 1 16.7487 -5.5201 1.9769 26 6 11.9634 -2.2798 0.8405 27 6 6.4288 -0.7563 0.0027 28 8 3.4540 -0.7360 0.0034 29 7 2.2849 -1.0432 0.0049 30 1 -0.3632 0.0045 1.0277 31 1 -0.3633 0.8877 -0.5177 32 1 -0.3633 -0.8922 -0.5099 33 1 2.0678 2.1747 0.0004 34 1 7.6984 1.9148 0.6555 35 1 7.9009 1.1941 -1.0020 36 1 7.8277 -1.3944 2.5816 37 1 8.7444 0.2063 2.5758 38 1 13.1587 0.4860 0.5512 39 1 13.2476 -0.6975 -0.8253 40 1 13.3976 -1.2969 2.2167 41 1 13.6148 -3.2333 2.9475 42 1 12.0089 -2.9779 0.0048 43 1 11.4383 -2.6840 1.7060 44 1 6.5373 -1.1868 -0.9928 45 1 5.8187 -1.3671 0.6681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269449866.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:45 Heat of formation + Delta-G solvation = 95.175880 kcal Electronic energy + Delta-G solvation = -28943.003503 eV Core-core repulsion = 24739.762243 eV Total energy + Delta-G solvation = -4203.241260 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.40123 -40.92756 -39.55850 -38.50801 -37.06099 -35.35199 -34.62701 -32.92388 -32.49462 -29.40351 -29.16727 -28.33696 -26.66709 -25.52005 -25.05293 -23.82931 -23.25235 -23.07517 -20.75953 -19.94192 -19.15361 -18.31016 -18.18255 -17.97444 -17.34162 -16.78235 -16.54231 -16.14993 -16.08947 -15.35296 -15.00367 -14.42663 -14.28020 -14.12108 -13.89710 -13.84534 -13.80594 -13.59876 -13.44415 -13.25003 -13.11770 -12.62737 -12.26713 -11.96290 -11.84247 -11.74581 -11.55669 -11.11422 -11.04520 -10.99349 -10.73883 -10.65284 -10.54577 -10.21062 -10.16096 -10.13554 -9.72942 -9.50887 -9.07994 -8.68057 -8.58327 -8.04730 -6.55823 -4.29586 0.41263 1.60980 2.05459 2.57280 2.60491 2.80535 3.23740 3.35583 3.37195 3.55385 3.62141 3.62457 3.84259 3.98975 4.26862 4.40053 4.40137 4.59207 4.65009 4.83433 4.95900 4.97782 4.98309 5.09106 5.13310 5.14400 5.18286 5.24722 5.39173 5.43903 5.53593 5.57225 5.62714 5.72741 5.79609 5.83771 5.97582 6.09519 6.19466 6.34448 6.39047 6.55535 7.17260 7.22864 7.46019 7.73169 7.93095 8.22677 8.29924 8.54927 8.66629 9.43262 10.83522 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.027004 B = 0.001823 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.618783 B =15355.035245 C =16048.835776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.010 3.990 3 C -0.154 4.154 4 C -0.073 4.073 5 C 0.626 3.374 6 O -0.513 6.513 7 N -0.632 5.632 8 C 0.170 3.830 9 C -0.154 4.154 10 C -0.111 4.111 11 C -0.150 4.150 12 H 0.128 0.872 13 C 0.552 3.448 14 O -0.561 6.561 15 N -0.634 5.634 16 C 0.112 3.888 17 C 0.013 3.987 18 C -0.597 4.597 19 H 0.056 0.944 20 C 0.025 3.975 21 N -0.902 5.902 22 Si 1.069 2.931 23 H -0.286 1.286 24 H -0.287 1.287 25 H -0.282 1.282 26 C 0.096 3.904 27 C 0.143 3.857 28 O 0.118 5.882 29 N -0.347 5.347 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.184 0.816 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.055 0.945 41 H 0.270 0.730 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.100 0.900 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.353 4.241 -3.872 24.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.147 4.147 3 C -0.176 4.176 4 C -0.139 4.139 5 C 0.412 3.588 6 O -0.390 6.390 7 N -0.366 5.366 8 C 0.050 3.950 9 C -0.155 4.155 10 C -0.148 4.148 11 C -0.172 4.172 12 H 0.146 0.854 13 C 0.341 3.659 14 O -0.441 6.441 15 N -0.367 5.367 16 C -0.009 4.009 17 C -0.006 4.006 18 C -0.635 4.635 19 H 0.075 0.925 20 C -0.180 4.180 21 N -0.537 5.537 22 Si 0.896 3.104 23 H -0.213 1.213 24 H -0.213 1.213 25 H -0.207 1.207 26 C -0.027 4.027 27 C 0.021 3.979 28 O 0.045 5.955 29 N -0.048 5.048 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.201 0.799 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.125 0.875 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.118 0.882 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.003 3.138 -3.634 23.499 hybrid contribution -1.135 1.871 -0.567 2.261 sum -24.138 5.009 -4.201 25.008 Atomic orbital electron populations 1.20217 0.85151 1.04201 1.03792 1.23678 0.99454 0.88254 1.03360 1.22873 0.89854 1.01810 1.03084 1.24202 0.97068 0.83991 1.08681 1.16006 0.79803 0.85481 0.77460 1.90892 1.85401 1.11568 1.51093 1.49824 1.05708 1.09951 1.71164 1.22622 0.74867 0.95792 1.01727 1.22455 0.93264 0.97678 1.02152 1.22845 0.99820 1.03208 0.88926 1.22141 0.90201 1.00427 1.04452 0.85405 1.19182 0.82846 0.86249 0.77575 1.90637 1.86489 1.17349 1.49623 1.50338 1.05326 1.16230 1.64788 1.23365 0.77118 0.99791 1.00636 1.20648 0.92640 0.91943 0.95377 1.21812 1.14775 1.18224 1.08704 0.92532 1.25879 1.01725 0.96577 0.93857 1.70826 1.21743 1.40416 1.20670 0.83534 0.75016 0.76168 0.75660 1.21277 1.21291 1.20723 1.23894 0.96419 0.83736 0.98640 1.22857 0.91154 0.82541 1.01387 1.85008 1.21381 1.22154 1.66914 1.73749 0.89306 1.24354 1.17421 0.89794 0.89631 0.90188 0.79884 0.89084 0.87982 0.87034 0.87525 0.91946 0.90531 0.92728 0.91943 0.90225 0.92000 0.88172 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.47 36.01 0.38 0.00 16 2 C 0.01 0.09 7.31 -82.16 -0.60 -0.51 16 3 C -0.15 -1.40 10.92 -38.94 -0.43 -1.82 16 4 C -0.07 -0.79 7.22 -36.31 -0.26 -1.05 16 5 C 0.63 7.90 8.05 -12.48 -0.10 7.80 16 6 O -0.51 -7.96 17.64 5.29 0.09 -7.87 16 7 N -0.63 -7.29 3.61 -182.99 -0.66 -7.95 16 8 C 0.17 2.13 7.27 -3.22 -0.02 2.11 16 9 C -0.15 -1.71 3.03 -155.03 -0.47 -2.18 16 10 C -0.11 -1.21 10.24 -27.00 -0.28 -1.49 16 11 C -0.15 -1.93 5.94 -92.04 -0.55 -2.48 16 12 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 13 C 0.55 9.62 7.84 -10.98 -0.09 9.53 16 14 O -0.56 -11.07 15.86 5.56 0.09 -10.98 16 15 N -0.63 -11.88 3.61 -178.40 -0.64 -12.53 16 16 C 0.11 2.24 8.39 -2.97 -0.02 2.22 16 17 C 0.01 0.29 3.10 -90.83 -0.28 0.01 16 18 C -0.60 -14.88 8.77 -34.44 -0.30 -15.18 16 19 H 0.06 1.40 7.81 -52.49 -0.41 0.99 16 20 C 0.03 0.65 5.46 -17.82 -0.10 0.56 16 21 N -0.90 -24.58 13.65 55.43 0.76 -23.82 16 22 Si 1.07 22.90 29.90 -169.99 -5.08 17.81 16 23 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 C 0.10 1.84 8.12 -2.96 -0.02 1.82 16 27 C 0.14 1.30 7.99 -3.23 -0.03 1.27 16 28 O 0.12 1.25 9.87 15.54 0.15 1.40 16 29 N -0.35 -3.70 12.04 33.52 0.40 -3.29 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.18 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.10 1.33 8.01 -51.93 -0.42 0.91 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.08 1.49 8.09 -51.93 -0.42 1.07 16 40 H 0.05 1.30 7.61 -51.93 -0.40 0.91 16 41 H 0.27 7.22 7.04 -40.82 -0.29 6.94 16 42 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 0.72 7.61 -51.93 -0.40 0.32 16 LS Contribution 391.37 15.07 5.90 5.90 Total: -1.00 -31.19 391.37 -8.35 -39.54 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -6.19 Total: 1.19 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -3.17 Total: 0.60 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.14 Total: -47.59 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.33 Total: -17.44 kcal Atomic # 14 Polarization: 22.90 SS G_CDS: -5.08 Total: 17.81 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.19 -8.35 -39.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269449866.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.717 kcal (2) G-P(sol) polarization free energy of solvation -31.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds