Wall clock time and date at job start Wed Apr 1 2020 03:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33491 * 126.82729 * 2 1 4 4 N 1.20661 * 113.15813 * 179.97438 * 3 2 1 5 5 C 1.30011 * 112.29832 * 0.02562 * 4 3 2 6 6 C 1.37353 * 126.83036 * 180.31318 * 2 1 3 7 7 C 1.47399 * 128.56795 * 359.97438 * 6 2 1 8 8 O 1.21612 * 120.00021 * 351.19638 * 7 6 2 9 9 N 1.34780 * 120.00059 * 171.19245 * 7 6 2 10 10 C 1.48092 * 126.94652 * 0.26910 * 9 7 6 11 11 C 1.54587 * 103.44103 * 219.01035 * 10 9 7 12 12 C 1.54704 * 102.77997 * 322.70889 * 11 10 9 13 13 H 1.09005 * 118.16420 * 162.70380 * 12 11 10 14 14 C 1.53122 * 117.55552 * 318.96393 * 12 11 10 15 15 C 1.47380 * 126.94229 * 180.58822 * 9 7 6 16 16 C 1.50706 * 117.18548 * 14.54962 * 15 9 7 17 17 O 1.21278 * 120.00188 * 228.96909 * 16 15 9 18 18 N 1.34771 * 119.99511 * 48.97091 * 16 15 9 19 19 C 1.47071 * 136.06142 * 355.52600 * 18 16 15 20 20 C 1.53236 * 88.08479 * 207.20565 * 19 18 16 21 21 C 1.50696 * 114.50608 * 220.45730 * 20 19 18 22 22 H 1.08000 * 120.00288 * 93.84606 * 21 20 19 23 23 C 1.37873 * 119.99972 * 273.84248 * 21 20 19 24 24 N 1.31521 * 120.00088 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00089 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46933 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46941 * 120.00092 * 25 23 21 28 28 H 1.48503 * 109.46673 * 239.99765 * 25 23 21 29 29 C 1.47069 * 136.05532 * 175.89731 * 18 16 15 30 30 H 1.08991 * 109.47225 * 359.97325 * 1 2 3 31 31 H 1.09003 * 109.47287 * 119.97787 * 1 2 3 32 32 H 1.09005 * 109.46718 * 239.97391 * 1 2 3 33 33 H 1.08002 * 127.33461 * 179.97438 * 5 4 3 34 34 H 1.09002 * 110.66013 * 337.50378 * 10 9 7 35 35 H 1.09000 * 110.65809 * 100.61585 * 10 9 7 36 36 H 1.08998 * 110.86567 * 204.31985 * 11 10 9 37 37 H 1.08995 * 110.74898 * 81.05056 * 11 10 9 38 38 H 1.09001 * 117.45495 * 344.37485 * 14 12 11 39 39 H 1.09006 * 117.43144 * 199.61308 * 14 12 11 40 40 H 1.09003 * 113.46600 * 321.93385 * 19 18 16 41 41 H 1.09000 * 113.46804 * 92.37648 * 19 18 16 42 42 H 1.09003 * 114.02164 * 87.71329 * 20 19 18 43 43 H 0.96998 * 120.00346 * 180.02562 * 24 23 21 44 44 H 1.08995 * 113.46921 * 267.62120 * 29 18 16 45 45 H 1.08994 * 113.46638 * 38.00449 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7834 0.0005 5 6 3.6747 -0.5020 0.0004 6 6 2.3304 -1.0994 -0.0060 7 6 1.9588 -2.5257 -0.0133 8 8 0.7984 -2.8526 0.1466 9 7 2.9051 -3.4677 -0.1972 10 6 4.3551 -3.2452 -0.3998 11 6 4.7354 -4.3004 -1.4636 12 6 3.8668 -5.5168 -1.0649 13 1 3.7162 -6.3053 -1.8023 14 6 3.7356 -5.8350 0.4272 15 6 2.7048 -4.9271 -0.2440 16 6 1.2913 -5.4232 -0.4081 17 8 0.8625 -6.2871 0.3272 18 7 0.5036 -4.9069 -1.3722 19 6 0.6179 -3.8335 -2.3711 20 6 -0.9072 -3.6937 -2.3199 21 6 -1.5598 -3.4712 -3.6599 22 1 -1.9382 -4.3118 -4.2226 23 6 -1.6740 -2.1944 -4.1675 24 7 -1.2128 -1.1707 -3.4825 25 14 -2.4836 -1.9184 -5.8283 26 1 -2.9151 -3.2229 -6.3914 27 1 -3.6663 -1.0361 -5.6618 28 1 -1.5133 -1.2767 -6.7513 29 6 -0.8509 -5.1644 -1.8838 30 1 -0.3633 1.0276 0.0005 31 1 -0.3634 -0.5135 -0.8902 32 1 -0.3633 -0.5143 0.8898 33 1 4.6220 -1.0208 0.0003 34 1 4.5411 -2.2385 -0.7740 35 1 4.9039 -3.4202 0.5256 36 1 5.7956 -4.5466 -1.4044 37 1 4.4765 -3.9516 -2.4632 38 1 4.4503 -5.3685 1.1052 39 1 3.4171 -6.8411 0.7000 40 1 1.1455 -2.9532 -2.0039 41 1 0.9902 -4.1767 -3.3363 42 1 -1.2647 -3.0121 -1.5481 43 1 -1.2935 -0.2724 -3.8395 44 1 -0.8738 -5.8657 -2.7179 45 1 -1.5694 -5.4145 -1.1033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270017132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:12 Heat of formation + Delta-G solvation = 99.019509 kcal Electronic energy + Delta-G solvation = -32413.441988 eV Core-core repulsion = 28210.367400 eV Total energy + Delta-G solvation = -4203.074588 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.81260 -41.04225 -38.75817 -38.25162 -36.70713 -34.03000 -33.15726 -32.65684 -32.56569 -30.57184 -29.04788 -27.73971 -25.57361 -25.20849 -24.87297 -24.23475 -22.92063 -22.06944 -20.85064 -19.83859 -19.28259 -18.23558 -17.64912 -17.26127 -16.76933 -16.50162 -16.41011 -15.94887 -15.14588 -14.95277 -14.80227 -14.44150 -14.15556 -13.89716 -13.56633 -13.36742 -13.13425 -12.92890 -12.78693 -12.59016 -12.42683 -12.30775 -12.07536 -11.94188 -11.39945 -11.25346 -11.21258 -11.13730 -10.93705 -10.85707 -10.70325 -10.49489 -10.35418 -10.23300 -9.78754 -9.52882 -9.22085 -9.11856 -8.92463 -8.54672 -8.45460 -7.69612 -6.16365 -4.19575 1.26175 1.81063 2.46122 2.96953 3.13619 3.22587 3.31908 3.35260 3.41174 3.51176 3.83453 4.10019 4.32786 4.34588 4.39049 4.43151 4.72812 4.79522 4.82300 4.87870 5.02070 5.14447 5.20319 5.36594 5.47090 5.48918 5.56041 5.70319 5.73459 5.88448 5.88967 5.94786 5.97951 6.11888 6.23111 6.31543 6.33853 6.54286 6.57795 6.64859 6.78362 6.94655 7.49624 7.65951 7.87497 8.19834 8.26261 8.31986 8.61395 8.83926 8.86043 9.46169 10.93309 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008736 B = 0.005725 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.527768 B = 4889.613724 C = 6913.913623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.078 3.922 3 O 0.086 5.914 4 N -0.360 5.360 5 C 0.007 3.993 6 C -0.267 4.267 7 C 0.612 3.388 8 O -0.485 6.485 9 N -0.582 5.582 10 C 0.080 3.920 11 C -0.104 4.104 12 C -0.157 4.157 13 H 0.125 0.875 14 C -0.127 4.127 15 C 0.073 3.927 16 C 0.584 3.416 17 O -0.562 6.562 18 N -0.613 5.613 19 C 0.106 3.894 20 C 0.043 3.957 21 C -0.514 4.514 22 H 0.061 0.939 23 C 0.071 3.929 24 N -0.883 5.883 25 Si 0.892 3.108 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.285 1.285 29 C 0.100 3.900 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.097 0.903 33 H 0.204 0.796 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.261 0.739 44 H 0.070 0.930 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.177 -0.076 5.270 14.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.014 3.986 3 O 0.028 5.972 4 N -0.067 5.067 5 C -0.175 4.175 6 C -0.275 4.275 7 C 0.402 3.598 8 O -0.358 6.358 9 N -0.317 5.317 10 C -0.042 4.042 11 C -0.142 4.142 12 C -0.177 4.177 13 H 0.143 0.857 14 C -0.166 4.166 15 C -0.016 4.016 16 C 0.371 3.629 17 O -0.442 6.442 18 N -0.344 5.344 19 C -0.016 4.016 20 C 0.024 3.976 21 C -0.553 4.553 22 H 0.079 0.921 23 C -0.132 4.132 24 N -0.520 5.520 25 Si 0.720 3.280 26 H -0.197 1.197 27 H -0.209 1.209 28 H -0.211 1.211 29 C -0.022 4.022 30 H 0.098 0.902 31 H 0.151 0.849 32 H 0.115 0.885 33 H 0.221 0.779 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.137 0.863 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.098 0.635 5.905 14.382 hybrid contribution -0.219 -0.496 -1.007 1.144 sum 12.879 0.138 4.898 13.780 Atomic orbital electron populations 1.20767 0.81740 1.04506 1.07202 1.25022 0.96527 0.84581 0.92429 1.84562 1.11336 1.33523 1.67801 1.73624 0.96374 1.17478 1.19189 1.26746 0.99085 0.89738 1.01924 1.21767 0.92529 0.94729 1.18484 1.16349 0.84231 0.82438 0.76818 1.90984 1.16989 1.80851 1.46994 1.47837 1.07744 1.03358 1.72790 1.22977 0.81027 1.01015 0.99212 1.22249 0.99713 0.92763 0.99445 1.23793 0.98483 1.00141 0.95288 0.85706 1.23344 0.98694 1.00584 0.93954 1.21417 0.91551 0.80768 1.07900 1.18151 0.83549 0.80909 0.80295 1.90631 1.73982 1.34145 1.45458 1.49540 1.17252 1.35698 1.31892 1.23487 1.02816 0.87312 0.88005 1.20235 0.90184 0.89666 0.97495 1.20991 1.38774 0.92885 1.02613 0.92065 1.24952 0.94844 0.96030 0.97372 1.69911 1.45606 0.98824 1.37705 0.86545 0.79203 0.78323 0.83970 1.19714 1.20905 1.21089 1.23344 0.81402 1.01504 0.95934 0.90209 0.84929 0.88480 0.77949 0.88581 0.90376 0.89289 0.89532 0.87979 0.86346 0.92504 0.92027 0.90825 0.92947 0.91198 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 9.47 36.01 0.34 -0.95 16 2 C 0.08 1.22 7.55 -34.63 -0.26 0.96 16 3 O 0.09 1.29 11.06 18.66 0.21 1.50 16 4 N -0.36 -5.23 12.01 31.81 0.38 -4.85 16 5 C 0.01 0.10 10.70 -14.73 -0.16 -0.06 16 6 C -0.27 -4.22 6.34 -102.89 -0.65 -4.87 16 7 C 0.61 10.91 5.54 -12.53 -0.07 10.84 16 8 O -0.49 -10.38 12.14 5.27 0.06 -10.32 16 9 N -0.58 -8.83 3.12 -157.98 -0.49 -9.32 16 10 C 0.08 0.81 5.68 -2.33 -0.01 0.79 16 11 C -0.10 -0.96 7.00 -25.00 -0.17 -1.14 16 12 C -0.16 -1.87 7.08 -89.14 -0.63 -2.50 16 13 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 14 C -0.13 -1.56 9.42 -26.73 -0.25 -1.81 16 15 C 0.07 1.18 3.11 -132.03 -0.41 0.77 16 16 C 0.58 12.27 6.41 -10.98 -0.07 12.20 16 17 O -0.56 -13.33 17.47 5.56 0.10 -13.23 16 18 N -0.61 -13.27 2.77 -185.38 -0.51 -13.78 16 19 C 0.11 2.34 6.77 -8.64 -0.06 2.28 16 20 C 0.04 1.04 3.57 -91.39 -0.33 0.71 16 21 C -0.51 -13.04 8.84 -34.44 -0.30 -13.34 16 22 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 23 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 24 N -0.88 -22.71 13.26 55.43 0.74 -21.97 16 25 Si 0.89 19.85 29.54 -169.99 -5.02 14.83 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 C 0.10 2.21 8.19 -8.50 -0.07 2.14 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.13 2.52 8.14 -51.93 -0.42 2.10 16 32 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.20 1.83 5.39 -52.49 -0.28 1.55 16 34 H 0.10 0.86 4.31 -51.93 -0.22 0.64 16 35 H 0.08 0.62 7.30 -51.93 -0.38 0.24 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.10 1.01 7.16 -51.93 -0.37 0.64 16 39 H 0.12 1.50 8.01 -51.93 -0.42 1.09 16 40 H 0.06 1.28 5.03 -51.93 -0.26 1.02 16 41 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 42 H 0.07 1.96 7.94 -51.93 -0.41 1.55 16 43 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 44 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 368.26 15.07 5.55 5.55 Total: -1.00 -31.48 368.26 -7.89 -39.37 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.69 Total: 4.50 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -3.21 Total: 7.73 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.11 Total: -49.93 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.37 Total: -22.05 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.48 -7.89 -39.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270017132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.389 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds