Wall clock time and date at job start Wed Apr 1 2020 03:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33491 * 126.82729 * 2 1 4 4 N 1.20661 * 113.15813 * 179.97438 * 3 2 1 5 5 C 1.30011 * 112.29832 * 0.02562 * 4 3 2 6 6 C 1.37353 * 126.83036 * 180.31318 * 2 1 3 7 7 C 1.47399 * 128.56795 * 359.97438 * 6 2 1 8 8 O 1.21612 * 120.00021 * 351.19638 * 7 6 2 9 9 N 1.34780 * 120.00059 * 171.19245 * 7 6 2 10 10 C 1.48092 * 126.94652 * 0.26910 * 9 7 6 11 11 C 1.54587 * 103.44103 * 219.01035 * 10 9 7 12 12 C 1.54704 * 102.77997 * 322.70889 * 11 10 9 13 13 H 1.09005 * 118.16420 * 162.70380 * 12 11 10 14 14 C 1.53122 * 117.55552 * 318.96393 * 12 11 10 15 15 C 1.47380 * 126.94229 * 180.58822 * 9 7 6 16 16 C 1.50706 * 117.18548 * 14.54962 * 15 9 7 17 17 O 1.21278 * 120.00188 * 228.96909 * 16 15 9 18 18 N 1.34771 * 119.99511 * 48.97091 * 16 15 9 19 19 C 1.47071 * 136.06142 * 355.52600 * 18 16 15 20 20 C 1.53236 * 88.08479 * 207.20565 * 19 18 16 21 21 C 1.50696 * 114.50608 * 220.45730 * 20 19 18 22 22 H 1.08000 * 120.00288 * 93.84606 * 21 20 19 23 23 C 1.37873 * 119.99972 * 273.84248 * 21 20 19 24 24 N 1.31521 * 120.00088 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00089 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46933 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46941 * 120.00092 * 25 23 21 28 28 H 1.48503 * 109.46673 * 239.99765 * 25 23 21 29 29 C 1.47069 * 136.05532 * 175.89731 * 18 16 15 30 30 H 1.08991 * 109.47225 * 359.97325 * 1 2 3 31 31 H 1.09003 * 109.47287 * 119.97787 * 1 2 3 32 32 H 1.09005 * 109.46718 * 239.97391 * 1 2 3 33 33 H 1.08002 * 127.33461 * 179.97438 * 5 4 3 34 34 H 1.09002 * 110.66013 * 337.50378 * 10 9 7 35 35 H 1.09000 * 110.65809 * 100.61585 * 10 9 7 36 36 H 1.08998 * 110.86567 * 204.31985 * 11 10 9 37 37 H 1.08995 * 110.74898 * 81.05056 * 11 10 9 38 38 H 1.09001 * 117.45495 * 344.37485 * 14 12 11 39 39 H 1.09006 * 117.43144 * 199.61308 * 14 12 11 40 40 H 1.09003 * 113.46600 * 321.93385 * 19 18 16 41 41 H 1.09000 * 113.46804 * 92.37648 * 19 18 16 42 42 H 1.09003 * 114.02164 * 87.71329 * 20 19 18 43 43 H 0.96998 * 120.00346 * 180.02562 * 24 23 21 44 44 H 1.08995 * 113.46921 * 267.62120 * 29 18 16 45 45 H 1.08994 * 113.46638 * 38.00449 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7834 0.0005 5 6 3.6747 -0.5020 0.0004 6 6 2.3304 -1.0994 -0.0060 7 6 1.9588 -2.5257 -0.0133 8 8 0.7984 -2.8526 0.1466 9 7 2.9051 -3.4677 -0.1972 10 6 4.3551 -3.2452 -0.3998 11 6 4.7354 -4.3004 -1.4636 12 6 3.8668 -5.5168 -1.0649 13 1 3.7162 -6.3053 -1.8023 14 6 3.7356 -5.8350 0.4272 15 6 2.7048 -4.9271 -0.2440 16 6 1.2913 -5.4232 -0.4081 17 8 0.8625 -6.2871 0.3272 18 7 0.5036 -4.9069 -1.3722 19 6 0.6179 -3.8335 -2.3711 20 6 -0.9072 -3.6937 -2.3199 21 6 -1.5598 -3.4712 -3.6599 22 1 -1.9382 -4.3118 -4.2226 23 6 -1.6740 -2.1944 -4.1675 24 7 -1.2128 -1.1707 -3.4825 25 14 -2.4836 -1.9184 -5.8283 26 1 -2.9151 -3.2229 -6.3914 27 1 -3.6663 -1.0361 -5.6618 28 1 -1.5133 -1.2767 -6.7513 29 6 -0.8509 -5.1644 -1.8838 30 1 -0.3633 1.0276 0.0005 31 1 -0.3634 -0.5135 -0.8902 32 1 -0.3633 -0.5143 0.8898 33 1 4.6220 -1.0208 0.0003 34 1 4.5411 -2.2385 -0.7740 35 1 4.9039 -3.4202 0.5256 36 1 5.7956 -4.5466 -1.4044 37 1 4.4765 -3.9516 -2.4632 38 1 4.4503 -5.3685 1.1052 39 1 3.4171 -6.8411 0.7000 40 1 1.1455 -2.9532 -2.0039 41 1 0.9902 -4.1767 -3.3363 42 1 -1.2647 -3.0121 -1.5481 43 1 -1.2935 -0.2724 -3.8395 44 1 -0.8738 -5.8657 -2.7179 45 1 -1.5694 -5.4145 -1.1033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270017132.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:10 Heat of formation + Delta-G solvation = 79.458071 kcal Electronic energy + Delta-G solvation = -32414.290235 eV Core-core repulsion = 28210.367400 eV Total energy + Delta-G solvation = -4203.922836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.93689 -42.25711 -40.37966 -39.58283 -38.36994 -35.20003 -34.60845 -34.30851 -33.69302 -31.68306 -30.66467 -28.96030 -27.32700 -26.73342 -26.30296 -25.28672 -24.12608 -23.43860 -21.95976 -21.37159 -20.46896 -19.53687 -18.89410 -18.79239 -18.49526 -17.85628 -17.62117 -17.20744 -16.64529 -16.46761 -16.16188 -16.09548 -15.45449 -15.05633 -14.86695 -14.75654 -14.37999 -14.23878 -14.04502 -13.97155 -13.73813 -13.64732 -13.45987 -13.21184 -13.12557 -12.89389 -12.70332 -12.57456 -12.35657 -12.17361 -12.02877 -11.74391 -11.66906 -11.44886 -11.23604 -11.14277 -10.99395 -10.66797 -10.47956 -10.46000 -9.58233 -9.43798 -8.10858 -6.21558 0.02026 0.73142 1.19735 1.45127 1.49250 1.58791 1.68890 1.93927 1.96000 2.11740 2.47147 2.70324 3.10592 3.17492 3.26408 3.33554 3.38472 3.51139 3.64467 3.84127 3.92864 4.06559 4.25903 4.28528 4.35917 4.41857 4.50581 4.53979 4.60195 4.63090 4.66730 4.69847 4.74606 4.80436 4.82026 4.96601 5.01344 5.04163 5.11675 5.17085 5.24067 5.25339 5.64702 5.89531 6.29739 6.34583 6.84298 6.94267 7.01230 7.08891 7.18236 7.46491 8.97924 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.008736 B = 0.005725 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3204.527768 B = 4889.613724 C = 6913.913623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.070 3.930 3 O 0.079 5.921 4 N -0.371 5.371 5 C 0.035 3.965 6 C -0.283 4.283 7 C 0.602 3.398 8 O -0.539 6.539 9 N -0.579 5.579 10 C 0.072 3.928 11 C -0.094 4.094 12 C -0.129 4.129 13 H 0.126 0.874 14 C -0.104 4.104 15 C 0.023 3.977 16 C 0.574 3.426 17 O -0.601 6.601 18 N -0.615 5.615 19 C 0.130 3.870 20 C 0.041 3.959 21 C -0.533 4.533 22 H 0.061 0.939 23 C 0.030 3.970 24 N -0.901 5.901 25 Si 0.953 3.047 26 H -0.269 1.269 27 H -0.283 1.283 28 H -0.281 1.281 29 C 0.100 3.900 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.247 0.753 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.134 0.866 37 H 0.079 0.921 38 H 0.136 0.864 39 H 0.110 0.890 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.037 0.963 43 H 0.263 0.737 44 H 0.084 0.916 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.895 -0.039 4.612 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.005 3.995 3 O 0.024 5.976 4 N -0.080 5.080 5 C -0.147 4.147 6 C -0.291 4.291 7 C 0.393 3.607 8 O -0.417 6.417 9 N -0.313 5.313 10 C -0.048 4.048 11 C -0.132 4.132 12 C -0.149 4.149 13 H 0.144 0.856 14 C -0.142 4.142 15 C -0.066 4.066 16 C 0.364 3.636 17 O -0.483 6.483 18 N -0.345 5.345 19 C 0.007 3.993 20 C 0.022 3.978 21 C -0.571 4.571 22 H 0.079 0.921 23 C -0.171 4.171 24 N -0.538 5.538 25 Si 0.780 3.220 26 H -0.194 1.194 27 H -0.209 1.209 28 H -0.206 1.206 29 C -0.023 4.023 30 H 0.122 0.878 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.262 0.738 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.152 0.848 37 H 0.098 0.902 38 H 0.154 0.846 39 H 0.128 0.872 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.055 0.945 43 H 0.072 0.928 44 H 0.102 0.898 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 16.863 0.673 5.239 17.671 hybrid contribution -1.367 -0.572 -0.753 1.662 sum 15.496 0.101 4.486 16.132 Atomic orbital electron populations 1.20539 0.82234 1.05363 1.05081 1.25048 0.96634 0.85175 0.92593 1.84562 1.11583 1.33186 1.68276 1.73619 0.95975 1.18292 1.20139 1.27297 0.99260 0.88860 0.99330 1.21829 0.94222 0.93879 1.19134 1.16686 0.84108 0.83483 0.76470 1.90958 1.19273 1.81716 1.49733 1.47901 1.09563 1.02417 1.71439 1.23432 0.77900 1.02144 1.01336 1.22347 1.01624 0.90613 0.98608 1.24050 0.95252 1.00308 0.95242 0.85616 1.23473 0.96591 0.99210 0.94950 1.21441 0.89510 0.82020 1.13637 1.19092 0.85511 0.80155 0.78842 1.90586 1.75494 1.35954 1.46315 1.49542 1.17002 1.35686 1.32291 1.23105 1.01011 0.87207 0.87985 1.19997 0.91716 0.89951 0.96130 1.21182 1.39543 0.93245 1.03103 0.92122 1.25631 0.95323 0.95786 1.00409 1.70035 1.45915 0.99058 1.38813 0.85583 0.78187 0.78119 0.80158 1.19352 1.20883 1.20641 1.23262 0.82280 1.00666 0.96062 0.87772 0.88913 0.88803 0.73755 0.87309 0.86857 0.84751 0.90212 0.84571 0.87205 0.93089 0.91830 0.94500 0.92802 0.89840 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.44 9.47 71.24 0.67 -1.76 16 2 C 0.07 2.21 7.55 25.48 0.19 2.41 16 3 O 0.08 2.32 11.06 77.00 0.85 3.18 16 4 N -0.37 -10.06 12.01 -54.20 -0.65 -10.71 16 5 C 0.04 0.81 10.70 87.29 0.93 1.74 16 6 C -0.28 -8.80 6.34 -18.75 -0.12 -8.92 16 7 C 0.60 21.62 5.54 86.65 0.48 22.10 16 8 O -0.54 -24.42 12.14 -4.07 -0.05 -24.47 16 9 N -0.58 -16.53 3.12 -771.98 -2.41 -18.94 16 10 C 0.07 1.10 5.68 86.61 0.49 1.59 16 11 C -0.09 -1.26 7.00 31.72 0.22 -1.04 16 12 C -0.13 -2.62 7.08 -9.83 -0.07 -2.68 16 13 H 0.13 2.56 8.14 -2.38 -0.02 2.54 16 14 C -0.10 -2.20 9.42 30.59 0.29 -1.91 16 15 C 0.02 0.72 3.11 2.99 0.01 0.73 16 16 C 0.57 24.70 6.41 87.66 0.56 25.26 16 17 O -0.60 -29.49 17.47 -3.02 -0.05 -29.54 16 18 N -0.61 -27.66 2.77 -858.80 -2.38 -30.04 16 19 C 0.13 5.91 6.77 83.09 0.56 6.47 16 20 C 0.04 2.09 3.57 -11.29 -0.04 2.05 16 21 C -0.53 -27.83 8.84 25.60 0.23 -27.60 16 22 H 0.06 3.11 7.81 -2.91 -0.02 3.08 16 23 C 0.03 1.54 5.46 84.65 0.46 2.01 16 24 N -0.90 -47.76 13.26 21.45 0.28 -47.47 16 25 Si 0.95 41.04 29.54 68.60 2.03 43.06 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 28 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 29 C 0.10 4.64 8.19 83.18 0.68 5.32 16 30 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.09 3.85 8.14 -2.39 -0.02 3.83 16 32 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 33 H 0.25 3.16 5.39 -2.91 -0.02 3.14 16 34 H 0.11 1.38 4.31 -2.39 -0.01 1.37 16 35 H 0.11 1.03 7.30 -2.39 -0.02 1.02 16 36 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.14 1.95 7.16 -2.39 -0.02 1.93 16 39 H 0.11 2.55 8.01 -2.38 -0.02 2.53 16 40 H 0.05 2.39 5.03 -2.39 -0.01 2.37 16 41 H 0.06 2.83 8.10 -2.39 -0.02 2.81 16 42 H 0.04 2.13 7.94 -2.39 -0.02 2.11 16 43 H 0.26 13.22 8.31 -92.71 -0.77 12.45 16 44 H 0.08 3.60 8.10 -2.39 -0.02 3.58 16 45 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -74.03 368.26 4.22 -69.80 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 1.04 Total: 19.37 kcal Atomic # 6 Polarization: 20.21 SS G_CDS: 5.56 Total: 25.76 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -5.15 Total: -107.16 kcal Atomic # 8 Polarization: -51.59 SS G_CDS: 0.75 Total: -50.84 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -74.03 4.22 -69.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270017132.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.261 kcal (2) G-P(sol) polarization free energy of solvation -74.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds