Wall clock time and date at job start Wed Apr 1 2020 03:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33492 * 126.83294 * 2 1 4 4 N 1.20657 * 113.15751 * 180.30861 * 3 2 1 5 5 C 1.30014 * 112.30077 * 359.71035 * 4 3 2 6 6 C 1.37368 * 126.82619 * 179.82204 * 2 1 3 7 7 C 1.47394 * 128.56632 * 0.02562 * 6 2 1 8 8 O 1.21612 * 120.00038 * 355.82478 * 7 6 2 9 9 N 1.34775 * 120.00109 * 175.82917 * 7 6 2 10 10 C 1.47613 * 126.78262 * 180.77551 * 9 7 6 11 11 C 1.54941 * 103.48978 * 219.28214 * 10 9 7 12 12 C 1.54580 * 102.85751 * 322.95234 * 11 10 9 13 13 H 1.09002 * 118.12771 * 242.39101 * 12 11 10 14 14 C 1.52940 * 118.19954 * 85.42376 * 12 11 10 15 15 C 1.47525 * 127.04271 * 1.63955 * 9 7 6 16 16 C 1.50700 * 117.36980 * 295.06403 * 15 9 7 17 17 O 1.21287 * 119.99956 * 140.48194 * 16 15 9 18 18 N 1.34774 * 120.00119 * 320.47663 * 16 15 9 19 19 C 1.47584 * 134.49393 * 176.20748 * 18 16 15 20 20 C 1.53937 * 86.11730 * 155.36127 * 19 18 16 21 21 C 1.50698 * 113.74508 * 137.95145 * 20 19 18 22 22 H 1.08003 * 119.99779 * 0.02562 * 21 20 19 23 23 C 1.37874 * 120.00338 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99918 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99933 * 0.02562 * 23 21 20 26 26 H 1.48504 * 109.46790 * 89.99931 * 25 23 21 27 27 H 1.48496 * 109.47192 * 329.99936 * 25 23 21 28 28 H 1.48503 * 109.46925 * 209.99809 * 25 23 21 29 29 C 1.47576 * 134.49378 * 356.20547 * 18 16 15 30 30 H 1.08998 * 109.47493 * 270.17148 * 1 2 3 31 31 H 1.08997 * 109.47047 * 30.17835 * 1 2 3 32 32 H 1.09010 * 109.46904 * 150.16976 * 1 2 3 33 33 H 1.08002 * 127.33245 * 180.02562 * 5 4 3 34 34 H 1.09004 * 110.22457 * 100.92098 * 10 9 7 35 35 H 1.08997 * 110.87993 * 337.95922 * 10 9 7 36 36 H 1.08997 * 110.73709 * 204.61356 * 11 10 9 37 37 H 1.08997 * 110.88762 * 81.36194 * 11 10 9 38 38 H 1.09003 * 117.45399 * 160.76991 * 14 12 11 39 39 H 1.08996 * 117.45280 * 15.99608 * 14 12 11 40 40 H 1.09003 * 113.77011 * 41.05493 * 19 18 16 41 41 H 1.09001 * 113.76537 * 269.66170 * 19 18 16 42 42 H 1.09003 * 113.73994 * 269.15416 * 20 19 18 43 43 H 0.97006 * 119.99923 * 180.02562 * 24 23 21 44 44 H 1.09006 * 113.76728 * 90.33282 * 29 18 16 45 45 H 1.09004 * 113.76821 * 318.94334 * 29 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3072 1.0685 0.0000 4 7 3.4796 0.7832 -0.0060 5 6 3.6746 -0.5022 -0.0049 6 6 2.3304 -1.0996 0.0034 7 6 1.9586 -2.5259 0.0073 8 8 0.7888 -2.8492 0.0845 9 7 2.9152 -3.4718 -0.0745 10 6 2.7127 -4.9338 -0.0991 11 6 3.8739 -5.4742 0.7728 12 6 5.0434 -4.5301 0.4116 13 1 5.9268 -4.9628 -0.0580 14 6 5.1648 -3.2072 1.1694 15 6 4.3734 -3.2578 -0.1398 16 6 4.9164 -2.5533 -1.3562 17 8 5.8132 -1.7450 -1.2390 18 7 4.4058 -2.8213 -2.5743 19 6 4.6340 -2.2885 -3.9316 20 6 4.1214 -3.6487 -4.4384 21 6 3.1924 -3.5450 -5.6204 22 1 2.9464 -2.5767 -6.0305 23 6 2.6572 -4.6863 -6.1789 24 7 1.8469 -4.5958 -7.2108 25 14 3.0832 -6.3613 -5.4700 26 1 2.1009 -6.7162 -4.4143 27 1 4.4466 -6.3182 -4.8832 28 1 3.0405 -7.3808 -6.5489 29 6 3.3940 -3.7655 -3.0867 30 1 -0.3634 0.0031 1.0276 31 1 -0.3633 0.8884 -0.5166 32 1 -0.3633 -0.8916 -0.5112 33 1 4.6219 -1.0210 -0.0088 34 1 2.7918 -5.3081 -1.1198 35 1 1.7492 -5.1999 0.3356 36 1 4.1116 -6.5034 0.5041 37 1 3.6311 -5.3997 1.8328 38 1 6.1323 -2.7054 1.1527 39 1 4.5987 -3.1046 2.0951 40 1 5.6834 -2.1017 -4.1596 41 1 3.9858 -1.4510 -4.1894 42 1 4.9087 -4.3891 -4.5803 43 1 1.4701 -5.3988 -7.6035 44 1 2.3814 -3.3619 -3.0963 45 1 3.4533 -4.7581 -2.6401 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270017135.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:15 Heat of formation + Delta-G solvation = 87.989962 kcal Electronic energy + Delta-G solvation = -32315.072627 eV Core-core repulsion = 28111.519762 eV Total energy + Delta-G solvation = -4203.552865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.84767 -41.28274 -39.28743 -38.35018 -37.29039 -33.81270 -33.37208 -32.98030 -32.69907 -31.05761 -29.74357 -27.97310 -26.18763 -25.39593 -25.25864 -23.44236 -23.28068 -22.33399 -20.76243 -20.47374 -19.46413 -18.59818 -17.73720 -17.67443 -17.21691 -16.87757 -16.51384 -15.91392 -15.72099 -15.38259 -14.86886 -14.65582 -14.32062 -13.95048 -13.83982 -13.62500 -13.29598 -13.23375 -13.08899 -12.96498 -12.77773 -12.58903 -12.42834 -12.20003 -11.97305 -11.75765 -11.37693 -11.28620 -11.10798 -11.01366 -10.89777 -10.61905 -10.29393 -10.17531 -10.12036 -9.91302 -9.64547 -9.45981 -9.31295 -8.82147 -8.75736 -8.25219 -6.27541 -4.31092 1.02826 1.88974 2.19177 2.63737 2.97128 3.02750 3.09183 3.12601 3.20205 3.22930 3.39249 3.97224 4.21940 4.23216 4.32034 4.38996 4.49830 4.58634 4.70234 4.81997 4.94372 4.97211 4.99584 5.22810 5.29414 5.31627 5.43777 5.45817 5.52183 5.55181 5.62497 5.68399 5.79853 5.83185 5.89232 5.94672 5.96714 6.03763 6.07859 6.17050 6.24146 6.35908 7.04890 7.22986 7.44753 7.94113 8.02440 8.23318 8.25800 8.32891 8.75424 9.31969 10.84506 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.010574 B = 0.004836 C = 0.004364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.362632 B = 5787.959829 C = 6415.095042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.049 3.951 3 O 0.087 5.913 4 N -0.355 5.355 5 C 0.013 3.987 6 C -0.271 4.271 7 C 0.627 3.373 8 O -0.528 6.528 9 N -0.574 5.574 10 C 0.101 3.899 11 C -0.107 4.107 12 C -0.129 4.129 13 H 0.131 0.869 14 C -0.121 4.121 15 C 0.032 3.968 16 C 0.562 3.438 17 O -0.550 6.550 18 N -0.620 5.620 19 C 0.118 3.882 20 C -0.010 4.010 21 C -0.515 4.515 22 H 0.080 0.920 23 C 0.079 3.921 24 N -0.889 5.889 25 Si 0.870 3.130 26 H -0.273 1.273 27 H -0.262 1.262 28 H -0.284 1.284 29 C 0.091 3.909 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.223 0.777 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.267 0.733 44 H 0.085 0.915 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.553 0.061 18.009 18.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.016 4.016 3 O 0.029 5.971 4 N -0.062 5.062 5 C -0.169 4.169 6 C -0.278 4.278 7 C 0.418 3.582 8 O -0.405 6.405 9 N -0.308 5.308 10 C -0.020 4.020 11 C -0.145 4.145 12 C -0.148 4.148 13 H 0.149 0.851 14 C -0.160 4.160 15 C -0.058 4.058 16 C 0.349 3.651 17 O -0.431 6.431 18 N -0.351 5.351 19 C -0.003 4.003 20 C -0.030 4.030 21 C -0.553 4.553 22 H 0.098 0.902 23 C -0.125 4.125 24 N -0.526 5.526 25 Si 0.697 3.303 26 H -0.198 1.198 27 H -0.187 1.187 28 H -0.210 1.210 29 C -0.031 4.031 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.126 0.874 33 H 0.238 0.762 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.101 0.899 38 H 0.141 0.859 39 H 0.125 0.875 40 H 0.089 0.911 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.103 0.897 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.000 1.400 18.086 18.250 hybrid contribution -0.084 -1.694 0.177 1.706 sum 1.916 -0.294 18.263 18.366 Atomic orbital electron populations 1.20580 0.82696 1.05643 1.04626 1.24846 0.96268 0.85381 0.95121 1.84576 1.11645 1.33244 1.67586 1.73650 0.95330 1.17875 1.19341 1.27835 1.00505 0.89555 0.98979 1.21927 0.93223 0.94782 1.17890 1.16344 0.83850 0.82661 0.75369 1.90793 1.16910 1.82031 1.50806 1.47696 1.03320 1.06691 1.73099 1.22803 0.99975 0.78048 1.01209 1.22455 0.92334 0.99049 1.00630 1.23821 0.99977 0.88475 1.02510 0.85083 1.23565 1.01481 0.97456 0.93457 1.21803 0.81380 1.06938 0.95704 1.18882 0.82609 0.81457 0.82144 1.90655 1.31568 1.35900 1.84940 1.50266 1.39933 1.39055 1.05860 1.23385 1.00813 0.99525 0.76586 1.21076 0.96082 0.93148 0.92650 1.20792 1.26848 0.95439 1.12195 0.90197 1.24994 0.94270 0.99048 0.94215 1.69886 1.30853 1.29558 1.22269 0.86931 0.79627 0.84302 0.79421 1.19831 1.18706 1.21010 1.24138 0.93159 0.91048 0.94802 0.88757 0.89478 0.87407 0.76171 0.89782 0.88537 0.88740 0.89917 0.85897 0.87481 0.91144 0.89949 0.91661 0.92273 0.89721 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 9.97 36.00 0.36 -0.46 16 2 C 0.05 0.69 7.55 -34.63 -0.26 0.43 16 3 O 0.09 1.32 11.06 18.65 0.21 1.53 16 4 N -0.36 -6.04 12.01 31.81 0.38 -5.66 16 5 C 0.01 0.23 10.05 -14.73 -0.15 0.08 16 6 C -0.27 -4.32 6.32 -102.89 -0.65 -4.98 16 7 C 0.63 10.09 7.87 -12.53 -0.10 9.99 16 8 O -0.53 -9.16 15.47 5.27 0.08 -9.08 16 9 N -0.57 -8.14 2.42 -157.94 -0.38 -8.52 16 10 C 0.10 1.19 6.84 -2.41 -0.02 1.17 16 11 C -0.11 -0.92 6.86 -24.88 -0.17 -1.09 16 12 C -0.13 -1.32 6.92 -89.29 -0.62 -1.93 16 13 H 0.13 1.24 8.14 -51.93 -0.42 0.82 16 14 C -0.12 -1.28 9.08 -26.73 -0.24 -1.52 16 15 C 0.03 0.44 1.05 -131.85 -0.14 0.30 16 16 C 0.56 9.69 5.82 -10.99 -0.06 9.63 16 17 O -0.55 -10.53 15.17 5.55 0.08 -10.45 16 18 N -0.62 -11.48 3.61 -178.44 -0.64 -12.12 16 19 C 0.12 2.30 8.39 -2.98 -0.02 2.27 16 20 C -0.01 -0.21 2.90 -90.86 -0.26 -0.48 16 21 C -0.52 -13.13 9.32 -34.44 -0.32 -13.45 16 22 H 0.08 2.23 8.06 -52.48 -0.42 1.81 16 23 C 0.08 2.07 5.47 -17.82 -0.10 1.98 16 24 N -0.89 -25.34 13.96 55.43 0.77 -24.56 16 25 Si 0.87 19.33 27.18 -169.99 -4.62 14.71 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 H -0.26 -5.49 6.25 56.52 0.35 -5.14 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 29 C 0.09 1.73 6.39 -2.98 -0.02 1.72 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.11 1.28 6.87 -51.92 -0.36 0.92 16 33 H 0.22 3.75 2.72 -52.49 -0.14 3.61 16 34 H 0.08 1.07 5.59 -51.93 -0.29 0.78 16 35 H 0.10 1.10 7.82 -51.93 -0.41 0.69 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.12 1.27 7.91 -51.93 -0.41 0.86 16 39 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.08 1.64 8.09 -51.93 -0.42 1.22 16 42 H 0.07 1.39 6.57 -51.93 -0.34 1.05 16 43 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.08 1.74 8.09 -51.93 -0.42 1.32 16 45 H 0.06 1.05 5.82 -51.93 -0.30 0.75 16 LS Contribution 364.97 15.07 5.50 5.50 Total: -1.00 -31.38 364.97 -7.05 -38.43 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.66 Total: 6.57 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.78 Total: 3.66 kcal Atomic # 7 Polarization: -51.00 SS G_CDS: 0.13 Total: -50.87 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: 0.37 Total: -18.00 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.62 Total: 14.71 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.38 -7.05 -38.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270017135.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.415 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds