Wall clock time and date at job start Wed Apr 1 2020 03:24:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 O 1.33495 * 126.83067 * 2 1
4 4 N 1.20656 * 113.15930 * 180.02562 * 3 2 1
5 5 C 1.30015 * 112.29857 * 359.97438 * 4 3 2
6 6 C 1.37363 * 126.82534 * 179.68466 * 2 1 3
7 7 C 1.47394 * 128.56670 * 359.96466 * 6 2 1
8 8 O 1.21600 * 120.00335 * 359.97438 * 7 6 2
9 9 N 1.34777 * 119.99672 * 179.97438 * 7 6 2
10 10 C 1.47252 * 135.90381 * 359.62789 * 9 7 6
11 11 C 1.52863 * 87.60036 * 153.81379 * 10 9 7
12 12 C 1.52096 * 129.98534 * 246.49445 * 11 10 9
13 13 C 1.52100 * 129.75776 * 164.46848 * 11 10 9
14 14 H 1.08999 * 117.52319 * 11.88713 * 13 11 10
15 15 C 1.50701 * 117.51977 * 226.72981 * 13 11 10
16 16 O 1.21284 * 120.00277 * 0.02562 * 15 13 11
17 17 N 1.34780 * 119.99727 * 179.97438 * 15 13 11
18 18 C 1.47060 * 136.05626 * 359.62581 * 17 15 13
19 19 C 1.53244 * 88.08309 * 207.20678 * 18 17 15
20 20 C 1.50704 * 114.32586 * 220.47453 * 19 18 17
21 21 H 1.07991 * 119.99948 * 93.75954 * 20 19 18
22 22 C 1.37876 * 119.99497 * 273.75688 * 20 19 18
23 23 N 1.31521 * 120.00370 * 0.02562 * 22 20 19
24 24 Si 1.86803 * 119.99801 * 179.97438 * 22 20 19
25 25 H 1.48498 * 109.46959 * 0.02562 * 24 22 20
26 26 H 1.48502 * 109.46904 * 119.99839 * 24 22 20
27 27 H 1.48499 * 109.47430 * 239.99906 * 24 22 20
28 28 C 1.47063 * 136.05573 * 180.02562 * 17 15 13
29 29 C 1.47253 * 135.89701 * 180.02562 * 9 7 6
30 30 H 1.09002 * 109.47152 * 0.02562 * 1 2 3
31 31 H 1.09001 * 109.46980 * 240.02626 * 1 2 3
32 32 H 1.09004 * 109.47113 * 120.02607 * 1 2 3
33 33 H 1.08001 * 127.33393 * 180.02562 * 5 4 3
34 34 H 1.09002 * 113.51686 * 268.47962 * 10 9 7
35 35 H 1.09004 * 113.51429 * 39.06368 * 10 9 7
36 36 H 1.09001 * 117.52203 * 348.44732 * 12 11 10
37 37 H 1.09000 * 117.52321 * 133.55330 * 12 11 10
38 38 H 1.08995 * 113.47064 * 321.93780 * 18 17 15
39 39 H 1.08995 * 113.46681 * 92.37939 * 18 17 15
40 40 H 1.08995 * 114.01373 * 87.71796 * 19 18 17
41 41 H 0.97001 * 119.99755 * 180.02562 * 23 22 20
42 42 H 1.09001 * 113.46734 * 267.62085 * 28 17 15
43 43 H 1.08998 * 113.47242 * 38.05996 * 28 17 15
44 44 H 1.09000 * 113.51470 * 320.93430 * 29 9 7
45 45 H 1.08993 * 113.51769 * 91.52529 * 29 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.3073 1.0685 0.0000
4 7 3.4796 0.7833 -0.0005
5 6 3.6747 -0.5021 -0.0004
6 6 2.3304 -1.0995 0.0061
7 6 1.9586 -2.5258 0.0146
8 8 0.7863 -2.8486 0.0176
9 7 2.9182 -3.4722 0.0192
10 6 4.3906 -3.4853 0.0112
11 6 4.3182 -4.8482 0.6998
12 6 4.7456 -5.2595 2.1003
13 6 5.3946 -5.9086 0.8737
14 1 6.4212 -5.6275 0.6389
15 6 5.0230 -7.3356 0.5624
16 8 3.9005 -7.6022 0.1883
17 7 5.9384 -8.3154 0.6988
18 6 7.3501 -8.3968 1.1026
19 6 7.4731 -9.6524 0.2328
20 6 8.3004 -10.7532 0.8452
21 1 7.8214 -11.5350 1.4158
22 6 9.6688 -10.7621 0.6769
23 7 10.2522 -9.8097 -0.0177
24 14 10.6945 -12.1261 1.4366
25 1 9.8054 -13.0676 2.1634
26 1 11.4181 -12.8566 0.3651
27 1 11.6751 -11.5388 2.3845
28 6 5.9670 -9.7726 0.5025
29 6 2.9514 -4.9443 0.0272
30 1 -0.3633 1.0277 -0.0005
31 1 -0.3633 -0.5134 0.8902
32 1 -0.3633 -0.5143 -0.8898
33 1 4.6219 -1.0209 -0.0003
34 1 4.8198 -3.5261 -0.9899
35 1 4.8358 -2.7067 0.6306
36 1 5.3455 -4.5516 2.6722
37 1 4.0497 -5.8641 2.6821
38 1 7.9528 -7.5620 0.7448
39 1 7.4868 -8.5905 2.1665
40 1 7.7258 -9.4483 -0.8076
41 1 11.2149 -9.8162 -0.1363
42 1 5.7312 -10.3368 1.4048
43 1 5.3961 -10.1051 -0.3644
44 1 2.1858 -5.3932 0.6600
45 1 2.9872 -5.3840 -0.9695
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001270017430.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:24:01
Heat of formation + Delta-G solvation = 105.420109 kcal
Electronic energy + Delta-G solvation = -29015.122667 eV
Core-core repulsion = 24812.325630 eV
Total energy + Delta-G solvation = -4202.797037 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-45.29399 -40.97269 -39.51000 -38.45154 -37.04762 -34.70077 -34.13950 -33.63471
-32.75189 -29.63502 -29.04464 -27.73561 -26.49164 -25.66433 -25.05894 -24.67125
-23.32165 -22.08231 -20.66621 -19.94261 -18.97456 -18.21242 -18.13462 -17.84240
-17.02473 -16.83549 -16.63716 -16.10381 -16.00458 -15.14541 -14.97075 -14.70370
-14.51946 -14.28619 -14.12011 -13.75909 -13.53180 -13.33714 -13.17893 -13.14461
-12.96261 -12.46482 -12.33517 -12.01819 -11.73933 -11.60820 -11.40577 -11.04014
-10.95739 -10.86124 -10.82860 -10.78597 -10.54729 -10.41357 -10.06731 -9.83547
-9.68030 -9.29502 -9.06902 -8.95617 -8.65475 -7.95728 -6.25076 -4.30612
0.69265 1.41062 2.25225 2.58177 2.79829 2.92888 3.18343 3.26728
3.29003 3.33048 3.64495 3.76637 3.91884 4.00519 4.19185 4.28052
4.36624 4.43441 4.66336 4.84396 4.93656 5.01865 5.07479 5.07747
5.10835 5.12658 5.21124 5.36611 5.44322 5.49572 5.53096 5.58078
5.69874 5.77686 5.83001 5.98630 6.10065 6.18588 6.37294 6.49338
6.56584 6.74804 7.39284 7.48262 7.72995 7.73938 7.84203 8.10844
8.41791 8.65698 8.74035 9.36760 10.84680
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.027486 B = 0.001848 C = 0.001765
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1018.466880 B =15144.126374 C =15858.238442
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.075 4.075
2 C 0.051 3.949
3 O 0.092 5.908
4 N -0.354 5.354
5 C 0.022 3.978
6 C -0.261 4.261
7 C 0.628 3.372
8 O -0.533 6.533
9 N -0.639 5.639
10 C 0.136 3.864
11 C -0.156 4.156
12 C -0.109 4.109
13 C -0.145 4.145
14 H 0.129 0.871
15 C 0.559 3.441
16 O -0.561 6.561
17 N -0.638 5.638
18 C 0.099 3.901
19 C 0.033 3.967
20 C -0.517 4.517
21 H 0.064 0.936
22 C 0.068 3.932
23 N -0.886 5.886
24 Si 0.896 3.104
25 H -0.271 1.271
26 H -0.283 1.283
27 H -0.283 1.283
28 C 0.101 3.899
29 C 0.166 3.834
30 H 0.085 0.915
31 H 0.101 0.899
32 H 0.101 0.899
33 H 0.201 0.799
34 H 0.099 0.901
35 H 0.082 0.918
36 H 0.110 0.890
37 H 0.105 0.895
38 H 0.060 0.940
39 H 0.075 0.925
40 H 0.068 0.932
41 H 0.264 0.736
42 H 0.074 0.926
43 H 0.058 0.942
44 H 0.085 0.915
45 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.883 18.682 1.601 22.198
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.014 4.014
3 O 0.032 5.968
4 N -0.060 5.060
5 C -0.160 4.160
6 C -0.268 4.268
7 C 0.419 3.581
8 O -0.411 6.411
9 N -0.373 5.373
10 C 0.014 3.986
11 C -0.158 4.158
12 C -0.146 4.146
13 C -0.167 4.167
14 H 0.147 0.853
15 C 0.348 3.652
16 O -0.442 6.442
17 N -0.370 5.370
18 C -0.023 4.023
19 C 0.014 3.986
20 C -0.555 4.555
21 H 0.083 0.917
22 C -0.135 4.135
23 N -0.523 5.523
24 Si 0.723 3.277
25 H -0.195 1.195
26 H -0.209 1.209
27 H -0.209 1.209
28 C -0.021 4.021
29 C 0.045 3.955
30 H 0.104 0.896
31 H 0.120 0.880
32 H 0.119 0.881
33 H 0.218 0.782
34 H 0.116 0.884
35 H 0.100 0.900
36 H 0.128 0.872
37 H 0.124 0.876
38 H 0.078 0.922
39 H 0.093 0.907
40 H 0.086 0.914
41 H 0.073 0.927
42 H 0.092 0.908
43 H 0.076 0.924
44 H 0.103 0.897
45 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -12.468 19.853 1.315 23.480
hybrid contribution 0.873 -1.426 0.395 1.718
sum -11.595 18.427 1.711 21.839
Atomic orbital electron populations
1.20528 0.82478 1.04430 1.05727 1.24871 0.96374 0.85100 0.95034
1.84594 1.11391 1.33228 1.67545 1.73673 0.95889 1.17532 1.18901
1.26578 0.99168 0.89449 1.00853 1.21979 0.92788 0.94959 1.17121
1.16099 0.83771 0.82051 0.76226 1.90816 1.17048 1.81911 1.51351
1.49271 1.07093 1.08303 1.72653 1.22667 0.80457 0.94830 1.00687
1.21975 0.97012 0.95559 1.01243 1.22769 1.01569 1.01304 0.88958
1.22066 0.98756 0.91392 1.04455 0.85287 1.18977 0.83421 0.84853
0.77980 1.90643 1.20582 1.83721 1.49252 1.49921 1.14002 1.08681
1.64424 1.23577 0.77176 1.00984 1.00554 1.20312 0.88622 0.92684
0.96967 1.20939 0.91479 1.09439 1.33624 0.91744 1.25031 0.98083
0.95844 0.94590 1.69956 1.10504 1.32561 1.39249 0.86478 0.80190
0.81929 0.79096 1.19539 1.20856 1.20890 1.23361 1.00116 0.78636
1.00015 1.22285 0.94294 0.77770 1.01173 0.89609 0.88024 0.88053
0.78249 0.88357 0.89978 0.87192 0.87635 0.92162 0.90682 0.91379
0.92655 0.90802 0.92390 0.89680 0.88378
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.46 9.43 36.01 0.34 -0.12 16
2 C 0.05 0.46 7.55 -34.63 -0.26 0.19 16
3 O 0.09 0.88 11.06 18.65 0.21 1.09 16
4 N -0.35 -3.70 12.01 31.81 0.38 -3.32 16
5 C 0.02 0.20 11.47 -14.72 -0.17 0.03 16
6 C -0.26 -2.73 6.45 -102.89 -0.66 -3.39 16
7 C 0.63 7.91 8.06 -12.53 -0.10 7.81 16
8 O -0.53 -8.13 16.83 5.28 0.09 -8.04 16
9 N -0.64 -7.33 3.69 -185.63 -0.68 -8.01 16
10 C 0.14 1.18 7.31 -7.50 -0.05 1.12 16
11 C -0.16 -1.73 3.15 -155.69 -0.49 -2.22 16
12 C -0.11 -1.15 10.24 -27.08 -0.28 -1.43 16
13 C -0.14 -1.86 6.02 -92.12 -0.55 -2.41 16
14 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16
15 C 0.56 9.79 7.86 -10.98 -0.09 9.70 16
16 O -0.56 -11.23 16.08 5.55 0.09 -11.14 16
17 N -0.64 -11.99 3.69 -185.42 -0.68 -12.67 16
18 C 0.10 1.93 7.98 -8.64 -0.07 1.86 16
19 C 0.03 0.74 3.77 -91.40 -0.34 0.40 16
20 C -0.52 -12.62 8.83 -34.44 -0.30 -12.92 16
21 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16
22 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16
23 N -0.89 -23.23 13.26 55.43 0.74 -22.49 16
24 Si 0.90 19.44 29.54 -169.99 -5.02 14.42 16
25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16
26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
27 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16
28 C 0.10 1.99 8.18 -8.52 -0.07 1.92 16
29 C 0.17 2.11 7.12 -7.62 -0.05 2.06 16
30 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16
31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16
32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16
33 H 0.20 1.28 5.80 -52.49 -0.30 0.97 16
34 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16
35 H 0.08 0.52 6.30 -51.93 -0.33 0.19 16
36 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16
37 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16
38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16
39 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16
40 H 0.07 1.66 8.11 -51.93 -0.42 1.24 16
41 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16
42 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16
43 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16
44 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16
45 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16
LS Contribution 388.43 15.07 5.85 5.85
Total: -1.00 -30.78 388.43 -8.38 -39.16
By element:
Atomic # 1 Polarization: 7.02 SS G_CDS: -6.09 Total: 0.93 kcal
Atomic # 6 Polarization: 7.48 SS G_CDS: -3.26 Total: 4.22 kcal
Atomic # 7 Polarization: -46.24 SS G_CDS: -0.25 Total: -46.50 kcal
Atomic # 8 Polarization: -18.47 SS G_CDS: 0.38 Total: -18.09 kcal
Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -30.78 -8.38 -39.16 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001270017430.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 144.580 kcal
(2) G-P(sol) polarization free energy of solvation -30.779 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.801 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.381 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal
(6) G-S(sol) free energy of system = (1) + (5) 105.420 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds