Wall clock time and date at job start Wed Apr 1 2020 03:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33490 * 126.83307 * 2 1 4 4 N 1.20653 * 113.15872 * 180.30806 * 3 2 1 5 5 C 1.30015 * 112.30213 * 359.71435 * 4 3 2 6 6 C 1.37360 * 126.82669 * 179.82383 * 2 1 3 7 7 C 1.47397 * 128.56614 * 359.97438 * 6 2 1 8 8 O 1.21610 * 120.00408 * 359.70829 * 7 6 2 9 9 N 1.34780 * 120.00304 * 179.70019 * 7 6 2 10 10 C 1.46500 * 120.00390 * 180.02562 * 9 7 6 11 11 C 1.54412 * 129.01250 * 180.02562 * 10 9 7 12 12 C 1.54419 * 78.89086 * 180.64334 * 11 10 9 13 13 C 1.50703 * 129.01419 * 180.64405 * 12 11 10 14 14 O 1.21281 * 119.99538 * 359.97438 * 13 12 11 15 15 N 1.34769 * 119.99988 * 180.02562 * 13 12 11 16 16 C 1.47584 * 134.49063 * 180.02562 * 15 13 12 17 17 C 1.53947 * 86.11565 * 204.63541 * 16 15 13 18 18 C 1.50699 * 113.73968 * 222.04272 * 17 16 15 19 19 H 1.07998 * 120.00165 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99722 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99969 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99800 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46673 * 90.00806 * 22 20 18 24 24 H 1.48502 * 109.47065 * 210.00473 * 22 20 18 25 25 H 1.48489 * 109.47475 * 330.00611 * 22 20 18 26 26 C 1.47577 * 134.49641 * 359.97438 * 15 13 12 27 27 C 1.54891 * 84.49409 * 43.15382 * 12 11 10 28 28 C 1.54885 * 84.49103 * 318.13307 * 12 11 10 29 29 H 1.08992 * 109.47058 * 270.17161 * 1 2 3 30 30 H 1.09004 * 109.46670 * 30.17821 * 1 2 3 31 31 H 1.08996 * 109.46682 * 150.17461 * 1 2 3 32 32 H 1.08001 * 127.33589 * 180.02562 * 5 4 3 33 33 H 0.97004 * 119.99616 * 0.02562 * 9 7 6 34 34 H 1.08992 * 114.93459 * 68.15798 * 11 10 9 35 35 H 1.08998 * 114.98218 * 293.12337 * 11 10 9 36 36 H 1.09001 * 113.76908 * 90.33461 * 16 15 13 37 37 H 1.08997 * 113.76763 * 318.93723 * 16 15 13 38 38 H 1.08997 * 113.73914 * 90.73986 * 17 16 15 39 39 H 0.97000 * 119.99858 * 179.97438 * 21 20 18 40 40 H 1.08995 * 113.76947 * 41.05826 * 26 15 13 41 41 H 1.09001 * 113.87193 * 269.67722 * 26 15 13 42 42 H 1.09001 * 114.98080 * 69.39259 * 27 12 11 43 43 H 1.09003 * 114.97457 * 204.56822 * 27 12 11 44 44 H 1.09008 * 114.97367 * 155.43371 * 28 12 11 45 45 H 1.08998 * 114.98354 * 290.60293 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3073 1.0684 0.0000 4 7 3.4796 0.7832 -0.0060 5 6 3.6747 -0.5022 -0.0050 6 6 2.3304 -1.0995 0.0034 7 6 1.9587 -2.5258 0.0083 8 8 0.7862 -2.8487 0.0151 9 7 2.9181 -3.4724 0.0050 10 6 2.5487 -4.8900 0.0093 11 6 3.4646 -6.1332 0.0073 12 6 2.0682 -6.7924 -0.0020 13 6 1.7101 -8.2562 0.0025 14 8 2.5863 -9.0947 0.0145 15 7 0.4163 -8.6335 -0.0079 16 6 -0.2819 -9.9337 -0.0070 17 6 -1.4562 -9.1851 -0.6631 18 6 -2.8053 -9.5738 -0.1155 19 1 -2.8775 -10.3157 0.6660 20 6 -3.9473 -8.9815 -0.6114 21 7 -3.8593 -8.0776 -1.5626 22 14 -5.6195 -9.4627 0.0680 23 1 -5.9599 -8.5826 1.2147 24 1 -6.6471 -9.3123 -0.9935 25 1 -5.5811 -10.8757 0.5229 26 6 -0.8712 -7.9125 -0.0237 27 6 1.7270 -5.7067 -1.0528 28 6 1.7080 -5.6957 1.0307 29 1 -0.3633 0.0031 1.0276 30 1 -0.3633 0.8884 -0.5166 31 1 -0.3632 -0.8915 -0.5111 32 1 4.6219 -1.0210 -0.0089 33 1 3.8534 -3.2149 -0.0002 34 1 4.0375 -6.2833 0.9223 35 1 4.0458 -6.2753 -0.9038 36 1 -0.5046 -10.3122 0.9906 37 1 0.1792 -10.6804 -0.6535 38 1 -1.4226 -9.1847 -1.7526 39 1 -4.6628 -7.6612 -1.9118 40 1 -0.8808 -7.0448 -0.6833 41 1 -1.2683 -7.6969 0.9683 42 1 2.2219 -5.8272 -2.0165 43 1 0.6689 -5.4562 -1.1288 44 1 0.6487 -5.4444 1.0847 45 1 2.1851 -5.8058 2.0045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270018087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:33 Heat of formation + Delta-G solvation = 126.728549 kcal Electronic energy + Delta-G solvation = -29624.488541 eV Core-core repulsion = 25422.615507 eV Total energy + Delta-G solvation = -4201.873034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.31083 -42.12344 -39.43117 -38.84716 -36.79246 -34.43821 -33.92807 -33.45563 -32.66528 -29.36419 -28.40232 -26.18913 -25.82037 -25.73178 -25.32206 -25.07558 -23.79238 -22.39232 -20.88098 -20.15271 -19.00297 -18.37606 -18.15578 -17.85938 -17.00546 -16.70837 -16.45669 -15.75151 -15.32910 -15.08517 -14.77450 -14.51341 -14.41246 -14.25922 -14.15858 -13.76863 -13.56776 -13.50078 -13.24731 -12.95293 -12.34258 -12.06729 -11.88980 -11.70178 -11.61194 -11.47425 -11.25514 -11.18098 -10.98383 -10.83415 -10.79234 -10.54593 -10.49503 -10.41466 -10.15913 -9.83316 -9.65026 -9.29827 -9.23548 -8.98941 -8.58518 -7.88143 -6.17339 -4.23056 0.68672 1.37736 2.29081 2.68135 2.84525 2.93059 3.24417 3.32098 3.34416 3.47070 3.74681 3.88417 4.05692 4.22687 4.31336 4.33248 4.35000 4.38110 4.65174 4.68107 4.90623 4.97766 5.11007 5.13579 5.24465 5.35819 5.51217 5.56592 5.61954 5.68362 5.77117 5.86877 5.96581 6.01322 6.09246 6.19105 6.27232 6.37027 6.38042 6.59576 6.68646 6.82555 7.10597 7.55143 7.74124 7.79938 7.86877 8.16779 8.45608 8.73056 8.80337 9.43802 10.92213 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011503 B = 0.002660 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.543870 B =10522.630114 C =12671.642564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.059 3.941 3 O 0.090 5.910 4 N -0.354 5.354 5 C 0.023 3.977 6 C -0.269 4.269 7 C 0.601 3.399 8 O -0.512 6.512 9 N -0.668 5.668 10 C 0.092 3.908 11 C -0.082 4.082 12 C -0.141 4.141 13 C 0.588 3.412 14 O -0.560 6.560 15 N -0.630 5.630 16 C 0.104 3.896 17 C 0.034 3.966 18 C -0.520 4.520 19 H 0.063 0.937 20 C 0.068 3.932 21 N -0.885 5.885 22 Si 0.895 3.105 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.105 3.895 27 C -0.099 4.099 28 C -0.095 4.095 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.201 0.799 33 H 0.406 0.594 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.264 0.736 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.717 16.169 2.871 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.005 4.005 3 O 0.031 5.969 4 N -0.060 5.060 5 C -0.160 4.160 6 C -0.277 4.277 7 C 0.388 3.612 8 O -0.387 6.387 9 N -0.317 5.317 10 C 0.004 3.996 11 C -0.120 4.120 12 C -0.145 4.145 13 C 0.376 3.624 14 O -0.440 6.440 15 N -0.363 5.363 16 C -0.017 4.017 17 C 0.015 3.985 18 C -0.558 4.558 19 H 0.081 0.919 20 C -0.135 4.135 21 N -0.521 5.521 22 Si 0.722 3.278 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.017 4.017 27 C -0.138 4.138 28 C -0.134 4.134 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.131 0.869 32 H 0.218 0.782 33 H 0.241 0.759 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.187 16.802 2.753 21.536 hybrid contribution -0.472 -0.646 0.386 0.888 sum 12.715 16.156 3.139 20.798 Atomic orbital electron populations 1.20690 0.82311 1.05952 1.05231 1.24946 0.96450 0.84986 0.94104 1.84597 1.11352 1.33340 1.67579 1.73663 0.96018 1.17478 1.18823 1.26378 0.98890 0.89663 1.01084 1.21975 0.92803 0.95021 1.17853 1.16751 0.85373 0.82788 0.76309 1.90863 1.17499 1.81810 1.48530 1.44299 1.09245 1.02912 1.75264 1.23257 0.97949 0.79611 0.98799 1.23973 0.94942 0.90176 1.02919 1.23219 0.98552 0.92182 1.00515 1.17997 0.81606 0.86283 0.76535 1.90644 1.47910 1.52698 1.52794 1.50348 1.03793 1.12449 1.69669 1.23552 0.91184 0.86382 1.00618 1.20512 0.91684 0.89302 0.97006 1.20953 0.89923 1.23831 1.21100 0.91876 1.25019 0.99342 0.94694 0.94468 1.69945 1.29313 1.26358 1.26509 0.86553 0.83457 0.79082 0.78702 1.20512 1.21153 1.19736 1.23769 0.77798 0.99489 1.00635 1.24843 1.01578 0.91285 0.96089 1.24350 1.01386 0.91364 0.96336 0.88312 0.89360 0.86874 0.78245 0.75857 0.89976 0.89848 0.90643 0.91918 0.91668 0.92626 0.91681 0.90670 0.90405 0.88938 0.88984 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.00 36.01 0.36 -0.22 16 2 C 0.06 0.52 7.55 -34.63 -0.26 0.26 16 3 O 0.09 0.84 11.06 18.66 0.21 1.05 16 4 N -0.35 -3.41 12.01 31.81 0.38 -3.03 16 5 C 0.02 0.18 11.95 -14.73 -0.18 0.00 16 6 C -0.27 -2.52 6.47 -102.89 -0.67 -3.19 16 7 C 0.60 6.81 7.81 -12.53 -0.10 6.71 16 8 O -0.51 -7.51 15.17 5.27 0.08 -7.43 16 9 N -0.67 -6.38 5.71 -63.78 -0.36 -6.75 16 10 C 0.09 1.09 3.92 -147.16 -0.58 0.52 16 11 C -0.08 -0.98 7.78 -26.71 -0.21 -1.18 16 12 C -0.14 -2.18 3.11 -172.27 -0.54 -2.71 16 13 C 0.59 11.53 8.17 -10.99 -0.09 11.44 16 14 O -0.56 -12.47 17.82 5.56 0.10 -12.37 16 15 N -0.63 -12.77 3.61 -178.41 -0.64 -13.41 16 16 C 0.10 2.14 8.39 -2.97 -0.02 2.12 16 17 C 0.03 0.79 3.62 -90.83 -0.33 0.46 16 18 C -0.52 -13.09 8.77 -34.44 -0.30 -13.39 16 19 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 20 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.88 -23.89 13.27 55.43 0.74 -23.16 16 22 Si 0.89 19.99 29.54 -169.99 -5.02 14.97 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 26 C 0.11 2.21 8.17 -2.96 -0.02 2.18 16 27 C -0.10 -1.41 7.93 -24.71 -0.20 -1.60 16 28 C -0.10 -1.32 7.76 -25.99 -0.20 -1.52 16 29 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.11 0.98 6.78 -51.93 -0.35 0.62 16 32 H 0.20 0.76 7.88 -52.49 -0.41 0.35 16 33 H 0.41 2.45 8.19 -40.82 -0.33 2.12 16 34 H 0.08 0.89 7.94 -51.93 -0.41 0.48 16 35 H 0.08 0.92 7.91 -51.93 -0.41 0.51 16 36 H 0.08 1.49 8.09 -51.93 -0.42 1.07 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.65 8.13 -51.93 -0.42 1.22 16 39 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 40 H 0.06 1.37 7.63 -51.93 -0.40 0.98 16 41 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 42 H 0.08 1.03 7.91 -51.93 -0.41 0.62 16 43 H 0.09 1.49 7.45 -51.93 -0.39 1.10 16 44 H 0.09 1.41 7.97 -51.92 -0.41 1.00 16 45 H 0.07 0.95 7.93 -51.93 -0.41 0.54 16 LS Contribution 388.82 15.07 5.86 5.86 Total: -1.00 -31.67 388.82 -8.11 -39.78 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.02 Total: 2.94 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -3.42 Total: 1.54 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.11 Total: -46.34 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: 0.39 Total: -18.75 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.67 -8.11 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270018087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.508 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds