Wall clock time and date at job start Wed Apr 1 2020 03:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.33490 * 126.83307 * 2 1 4 4 N 1.20653 * 113.15872 * 180.30806 * 3 2 1 5 5 C 1.30015 * 112.30213 * 359.71435 * 4 3 2 6 6 C 1.37360 * 126.82669 * 179.82383 * 2 1 3 7 7 C 1.47397 * 128.56614 * 359.97438 * 6 2 1 8 8 O 1.21610 * 120.00408 * 359.70829 * 7 6 2 9 9 N 1.34780 * 120.00304 * 179.70019 * 7 6 2 10 10 C 1.46500 * 120.00390 * 180.02562 * 9 7 6 11 11 C 1.54412 * 129.01250 * 180.02562 * 10 9 7 12 12 C 1.54419 * 78.89086 * 180.64334 * 11 10 9 13 13 C 1.50703 * 129.01419 * 180.64405 * 12 11 10 14 14 O 1.21281 * 119.99538 * 359.97438 * 13 12 11 15 15 N 1.34769 * 119.99988 * 180.02562 * 13 12 11 16 16 C 1.47584 * 134.49063 * 180.02562 * 15 13 12 17 17 C 1.53947 * 86.11565 * 204.63541 * 16 15 13 18 18 C 1.50699 * 113.73968 * 222.04272 * 17 16 15 19 19 H 1.07998 * 120.00165 * 0.02562 * 18 17 16 20 20 C 1.37878 * 119.99722 * 179.97438 * 18 17 16 21 21 N 1.31513 * 119.99969 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99800 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46673 * 90.00806 * 22 20 18 24 24 H 1.48502 * 109.47065 * 210.00473 * 22 20 18 25 25 H 1.48489 * 109.47475 * 330.00611 * 22 20 18 26 26 C 1.47577 * 134.49641 * 359.97438 * 15 13 12 27 27 C 1.54891 * 84.49409 * 43.15382 * 12 11 10 28 28 C 1.54885 * 84.49103 * 318.13307 * 12 11 10 29 29 H 1.08992 * 109.47058 * 270.17161 * 1 2 3 30 30 H 1.09004 * 109.46670 * 30.17821 * 1 2 3 31 31 H 1.08996 * 109.46682 * 150.17461 * 1 2 3 32 32 H 1.08001 * 127.33589 * 180.02562 * 5 4 3 33 33 H 0.97004 * 119.99616 * 0.02562 * 9 7 6 34 34 H 1.08992 * 114.93459 * 68.15798 * 11 10 9 35 35 H 1.08998 * 114.98218 * 293.12337 * 11 10 9 36 36 H 1.09001 * 113.76908 * 90.33461 * 16 15 13 37 37 H 1.08997 * 113.76763 * 318.93723 * 16 15 13 38 38 H 1.08997 * 113.73914 * 90.73986 * 17 16 15 39 39 H 0.97000 * 119.99858 * 179.97438 * 21 20 18 40 40 H 1.08995 * 113.76947 * 41.05826 * 26 15 13 41 41 H 1.09001 * 113.87193 * 269.67722 * 26 15 13 42 42 H 1.09001 * 114.98080 * 69.39259 * 27 12 11 43 43 H 1.09003 * 114.97457 * 204.56822 * 27 12 11 44 44 H 1.09008 * 114.97367 * 155.43371 * 28 12 11 45 45 H 1.08998 * 114.98354 * 290.60293 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3073 1.0684 0.0000 4 7 3.4796 0.7832 -0.0060 5 6 3.6747 -0.5022 -0.0050 6 6 2.3304 -1.0995 0.0034 7 6 1.9587 -2.5258 0.0083 8 8 0.7862 -2.8487 0.0151 9 7 2.9181 -3.4724 0.0050 10 6 2.5487 -4.8900 0.0093 11 6 3.4646 -6.1332 0.0073 12 6 2.0682 -6.7924 -0.0020 13 6 1.7101 -8.2562 0.0025 14 8 2.5863 -9.0947 0.0145 15 7 0.4163 -8.6335 -0.0079 16 6 -0.2819 -9.9337 -0.0070 17 6 -1.4562 -9.1851 -0.6631 18 6 -2.8053 -9.5738 -0.1155 19 1 -2.8775 -10.3157 0.6660 20 6 -3.9473 -8.9815 -0.6114 21 7 -3.8593 -8.0776 -1.5626 22 14 -5.6195 -9.4627 0.0680 23 1 -5.9599 -8.5826 1.2147 24 1 -6.6471 -9.3123 -0.9935 25 1 -5.5811 -10.8757 0.5229 26 6 -0.8712 -7.9125 -0.0237 27 6 1.7270 -5.7067 -1.0528 28 6 1.7080 -5.6957 1.0307 29 1 -0.3633 0.0031 1.0276 30 1 -0.3633 0.8884 -0.5166 31 1 -0.3632 -0.8915 -0.5111 32 1 4.6219 -1.0210 -0.0089 33 1 3.8534 -3.2149 -0.0002 34 1 4.0375 -6.2833 0.9223 35 1 4.0458 -6.2753 -0.9038 36 1 -0.5046 -10.3122 0.9906 37 1 0.1792 -10.6804 -0.6535 38 1 -1.4226 -9.1847 -1.7526 39 1 -4.6628 -7.6612 -1.9118 40 1 -0.8808 -7.0448 -0.6833 41 1 -1.2683 -7.6969 0.9683 42 1 2.2219 -5.8272 -2.0165 43 1 0.6689 -5.4562 -1.1288 44 1 0.6487 -5.4444 1.0847 45 1 2.1851 -5.8058 2.0045 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270018087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:32 Heat of formation + Delta-G solvation = 106.593256 kcal Electronic energy + Delta-G solvation = -29625.361672 eV Core-core repulsion = 25422.615507 eV Total energy + Delta-G solvation = -4202.746166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.96563 -43.23287 -40.73831 -40.13868 -38.47846 -35.28080 -34.64397 -34.60040 -34.16444 -31.09466 -29.06139 -27.68713 -27.00829 -26.90504 -26.67176 -26.37073 -25.01359 -23.30003 -21.88207 -21.48600 -20.27587 -19.27812 -19.13296 -18.82271 -18.68597 -18.04655 -17.37530 -17.25909 -16.62272 -16.21452 -16.16941 -15.97899 -15.47930 -15.37566 -15.26356 -14.88537 -14.64646 -14.39841 -14.11595 -14.07372 -13.64713 -13.53212 -13.33591 -13.17732 -12.91930 -12.81730 -12.69180 -12.44632 -12.31696 -12.26250 -12.23902 -11.60099 -11.56747 -11.49924 -11.43321 -11.20888 -11.10701 -10.75189 -10.56233 -10.52855 -10.15665 -9.58672 -8.15602 -6.26935 -0.03366 0.75105 1.40412 1.46347 1.47336 1.49719 1.58753 1.85635 2.01199 2.05212 2.46430 3.00454 3.15031 3.17130 3.23370 3.25058 3.25909 3.34234 3.44962 3.49185 3.59180 4.02945 4.27752 4.29381 4.41348 4.45126 4.50701 4.57746 4.59680 4.62056 4.66111 4.70834 4.76389 4.78052 4.79636 4.83058 4.84918 4.91414 5.02272 5.07841 5.13477 5.40136 5.59606 5.81752 6.22555 6.35127 6.80588 6.82682 7.04505 7.10306 7.12319 7.43114 8.94072 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011503 B = 0.002660 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.543870 B =10522.630114 C =12671.642564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.063 3.937 3 O 0.081 5.919 4 N -0.378 5.378 5 C 0.044 3.956 6 C -0.288 4.288 7 C 0.602 3.398 8 O -0.552 6.552 9 N -0.652 5.652 10 C 0.119 3.881 11 C -0.059 4.059 12 C -0.169 4.169 13 C 0.586 3.414 14 O -0.587 6.587 15 N -0.633 5.633 16 C 0.110 3.890 17 C 0.024 3.976 18 C -0.530 4.530 19 H 0.067 0.933 20 C 0.020 3.980 21 N -0.918 5.918 22 Si 0.957 3.043 23 H -0.274 1.274 24 H -0.287 1.287 25 H -0.266 1.266 26 C 0.124 3.876 27 C -0.105 4.105 28 C -0.095 4.095 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.239 0.761 33 H 0.427 0.573 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.036 0.964 39 H 0.264 0.736 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.386 17.119 3.874 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.001 4.001 3 O 0.026 5.974 4 N -0.087 5.087 5 C -0.139 4.139 6 C -0.295 4.295 7 C 0.390 3.610 8 O -0.430 6.430 9 N -0.303 5.303 10 C 0.030 3.970 11 C -0.098 4.098 12 C -0.173 4.173 13 C 0.376 3.624 14 O -0.469 6.469 15 N -0.365 5.365 16 C -0.012 4.012 17 C 0.004 3.996 18 C -0.568 4.568 19 H 0.085 0.915 20 C -0.180 4.180 21 N -0.556 5.556 22 Si 0.783 3.217 23 H -0.200 1.200 24 H -0.213 1.213 25 H -0.190 1.190 26 C 0.001 3.999 27 C -0.144 4.144 28 C -0.134 4.134 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.256 0.744 33 H 0.267 0.733 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 14.884 17.775 3.764 23.488 hybrid contribution -0.985 -0.961 0.042 1.377 sum 13.899 16.814 3.807 22.145 Atomic orbital electron populations 1.20740 0.81417 1.06108 1.05895 1.25288 0.97131 0.84994 0.92710 1.84595 1.11446 1.33362 1.68001 1.73663 0.96135 1.18492 1.20379 1.26944 0.99472 0.88910 0.98551 1.21862 0.94089 0.93972 1.19577 1.17004 0.84946 0.83652 0.75403 1.90862 1.19258 1.82500 1.50403 1.44134 1.10242 1.01433 1.74462 1.22806 0.97201 0.80820 0.96182 1.23895 0.93035 0.88092 1.04737 1.23160 1.02135 0.89989 1.02037 1.18578 0.80637 0.87983 0.75240 1.90616 1.48269 1.54097 1.53921 1.50320 1.04161 1.11937 1.70084 1.23444 0.90137 0.86635 1.00964 1.20416 0.92267 0.91366 0.95508 1.21265 0.90880 1.23638 1.20996 0.91473 1.25763 1.02764 0.94701 0.94760 1.70061 1.30099 1.27555 1.27846 0.85567 0.79212 0.79001 0.77956 1.20001 1.21286 1.19006 1.23430 0.78093 0.98238 1.00129 1.24866 1.00668 0.91788 0.97078 1.24345 1.00699 0.91114 0.97283 0.87332 0.87057 0.88756 0.74441 0.73314 0.87967 0.88237 0.89486 0.91475 0.94559 0.92706 0.92483 0.90554 0.89385 0.91699 0.91318 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.00 71.24 0.71 -0.41 16 2 C 0.06 1.05 7.55 25.48 0.19 1.24 16 3 O 0.08 1.41 11.06 77.02 0.85 2.26 16 4 N -0.38 -6.54 12.01 -54.20 -0.65 -7.19 16 5 C 0.04 0.55 11.95 87.29 1.04 1.60 16 6 C -0.29 -4.91 6.47 -18.74 -0.12 -5.03 16 7 C 0.60 12.85 7.81 86.65 0.68 13.53 16 8 O -0.55 -16.31 15.17 -4.06 -0.06 -16.38 16 9 N -0.65 -10.75 5.71 -473.94 -2.71 -13.46 16 10 C 0.12 2.59 3.92 -6.34 -0.02 2.57 16 11 C -0.06 -1.24 7.78 30.61 0.24 -1.00 16 12 C -0.17 -5.11 3.11 -63.68 -0.20 -5.31 16 13 C 0.59 22.91 8.17 87.66 0.72 23.62 16 14 O -0.59 -25.84 17.82 -3.03 -0.05 -25.89 16 15 N -0.63 -26.02 3.61 -836.76 -3.02 -29.04 16 16 C 0.11 4.57 8.39 86.48 0.73 5.29 16 17 C 0.02 1.13 3.62 -10.87 -0.04 1.09 16 18 C -0.53 -26.99 8.77 25.60 0.22 -26.76 16 19 H 0.07 3.30 7.81 -2.91 -0.02 3.28 16 20 C 0.02 1.06 5.46 84.66 0.46 1.53 16 21 N -0.92 -50.74 13.27 21.45 0.28 -50.46 16 22 Si 0.96 41.14 29.54 68.60 2.03 43.16 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.29 -12.31 7.11 99.48 0.71 -11.61 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 C 0.12 5.35 8.17 86.49 0.71 6.05 16 27 C -0.10 -2.95 7.93 31.90 0.25 -2.70 16 28 C -0.10 -2.55 7.76 31.07 0.24 -2.31 16 29 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.68 6.78 -2.39 -0.02 1.66 16 32 H 0.24 0.74 7.88 -2.91 -0.02 0.72 16 33 H 0.43 3.45 8.19 -92.71 -0.76 2.69 16 34 H 0.10 1.80 7.94 -2.39 -0.02 1.78 16 35 H 0.10 1.82 7.91 -2.39 -0.02 1.81 16 36 H 0.09 3.41 8.09 -2.39 -0.02 3.39 16 37 H 0.07 2.70 8.14 -2.39 -0.02 2.69 16 38 H 0.04 1.92 8.13 -2.39 -0.02 1.90 16 39 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 40 H 0.06 2.54 7.63 -2.39 -0.02 2.52 16 41 H 0.08 3.27 8.09 -2.39 -0.02 3.25 16 42 H 0.09 2.26 7.91 -2.39 -0.02 2.24 16 43 H 0.06 2.18 7.45 -2.39 -0.02 2.17 16 44 H 0.07 2.16 7.97 -2.38 -0.02 2.14 16 45 H 0.09 2.14 7.93 -2.39 -0.02 2.12 16 Total: -1.00 -69.87 388.82 2.76 -67.11 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: 0.28 Total: 16.87 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 5.81 Total: 13.00 kcal Atomic # 7 Polarization: -94.05 SS G_CDS: -6.09 Total: -100.14 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: 0.74 Total: -40.01 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.16 kcal Total: -69.87 2.76 -67.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270018087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.704 kcal (2) G-P(sol) polarization free energy of solvation -69.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds