Wall clock time and date at job start Wed Apr 1 2020 03:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35311 * 126.66196 * 2 1 4 4 C 1.42272 * 103.92432 * 180.12923 * 3 2 1 5 5 C 1.48327 * 126.94200 * 179.90587 * 4 3 2 6 6 O 1.21491 * 120.00401 * 359.71373 * 5 4 3 7 7 N 1.34780 * 120.00037 * 179.71118 * 5 4 3 8 8 C 1.46491 * 120.00145 * 180.02562 * 7 5 4 9 9 C 1.54415 * 129.01464 * 179.97438 * 8 7 5 10 10 C 1.54417 * 78.89586 * 179.35585 * 9 8 7 11 11 C 1.50701 * 129.01699 * 180.65057 * 10 9 8 12 12 O 1.21285 * 119.99865 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99961 * 180.02562 * 11 10 9 14 14 C 1.47068 * 136.06142 * 359.62066 * 13 11 10 15 15 C 1.53756 * 87.88872 * 152.96904 * 14 13 11 16 16 C 1.50695 * 114.08534 * 139.78290 * 15 14 13 17 17 H 1.08008 * 119.99827 * 266.55494 * 16 15 14 18 18 C 1.37876 * 120.00197 * 86.56260 * 16 15 14 19 19 N 1.31513 * 119.99889 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00001 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47223 * 89.99934 * 20 18 16 22 22 H 1.48501 * 109.47093 * 209.99399 * 20 18 16 23 23 H 1.48497 * 109.47400 * 330.00029 * 20 18 16 24 24 C 1.47069 * 136.05341 * 179.97438 * 13 11 10 25 25 C 1.54894 * 84.49242 * 318.13560 * 10 9 8 26 26 C 1.54886 * 84.49253 * 41.86436 * 10 9 8 27 27 N 1.30989 * 106.11745 * 359.64928 * 4 3 2 28 28 O 1.20909 * 111.44184 * 0.22389 * 27 4 3 29 29 H 1.09007 * 109.46903 * 180.28898 * 1 2 3 30 30 H 1.08995 * 109.47334 * 300.28265 * 1 2 3 31 31 H 1.08998 * 109.47493 * 60.29229 * 1 2 3 32 32 H 1.08002 * 128.04121 * 0.02562 * 3 2 1 33 33 H 0.97001 * 120.00042 * 359.97438 * 7 5 4 34 34 H 1.09005 * 114.93375 * 66.86683 * 9 8 7 35 35 H 1.08999 * 114.98952 * 291.84284 * 9 8 7 36 36 H 1.08995 * 113.46594 * 267.70041 * 14 13 11 37 37 H 1.09004 * 113.46428 * 38.13679 * 14 13 11 38 38 H 1.09003 * 114.39397 * 272.67752 * 15 14 13 39 39 H 0.97006 * 119.99716 * 179.97438 * 19 18 16 40 40 H 1.08993 * 113.46987 * 321.85804 * 24 13 11 41 41 H 1.09007 * 113.46850 * 92.30264 * 24 13 11 42 42 H 1.09001 * 114.97827 * 154.16911 * 25 10 9 43 43 H 1.08997 * 114.97911 * 289.34528 * 25 10 9 44 44 H 1.09001 * 114.97663 * 70.66214 * 26 10 9 45 45 H 1.09004 * 114.97829 * 205.82989 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5355 -0.0031 5 6 4.9075 1.2843 -0.0064 6 8 4.9008 2.4992 -0.0118 7 7 6.0785 0.6170 -0.0032 8 6 7.3430 1.3565 -0.0059 9 6 8.7878 0.8116 -0.0026 10 6 9.0443 2.3341 -0.0264 11 6 10.3564 3.0749 -0.0553 12 8 11.4008 2.4583 -0.0620 13 7 10.3692 4.4224 -0.0727 14 6 9.3588 5.4911 -0.0781 15 6 10.3980 6.3990 0.6001 16 6 10.4044 7.8160 0.0874 17 1 11.0779 8.0995 -0.7080 18 6 9.5508 8.7507 0.6338 19 7 8.7305 8.4055 1.6021 20 14 9.5593 10.5075 -0.0012 21 1 8.5865 10.6356 -1.1159 22 1 9.1789 11.4325 1.0965 23 1 10.9192 10.8509 -0.4892 24 6 11.3997 5.4712 -0.1009 25 6 7.8838 2.3628 -1.0519 26 6 7.8909 2.3937 1.0057 27 7 3.4761 -0.7656 0.0031 28 8 2.3073 -1.0749 0.0049 29 1 -0.3633 -1.0277 0.0052 30 1 -0.3634 0.5182 0.8874 31 1 -0.3634 0.5093 -0.8926 32 1 2.0300 2.1272 0.0004 33 1 6.0839 -0.3530 0.0015 34 1 9.0812 0.2820 -0.9091 35 1 9.0884 0.3093 0.9168 36 1 9.0816 5.8212 -1.0792 37 1 8.4943 5.2742 0.5493 38 1 10.4128 6.3318 1.6880 39 1 8.1301 9.0633 1.9867 40 1 12.2736 5.2376 0.5071 41 1 11.6609 5.7962 -1.1081 42 1 7.3409 3.3064 -1.1064 43 1 8.1191 1.9327 -2.0254 44 1 8.1330 1.9932 1.9901 45 1 7.3483 3.3386 1.0354 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270026003.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:37 Heat of formation + Delta-G solvation = 133.571038 kcal Electronic energy + Delta-G solvation = -29298.131179 eV Core-core repulsion = 25096.554858 eV Total energy + Delta-G solvation = -4201.576321 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.48655 -42.26620 -39.48280 -38.95965 -36.88184 -34.56173 -34.34375 -33.38329 -32.67600 -29.41616 -28.31438 -26.33719 -25.92378 -25.70038 -25.38930 -24.92813 -23.62397 -23.01539 -20.91286 -20.09366 -19.12669 -18.24478 -17.93831 -17.82737 -17.18819 -16.90828 -16.51073 -15.73175 -15.14219 -15.04821 -14.75878 -14.48529 -14.33386 -14.23754 -14.22571 -14.13963 -13.78691 -13.59238 -13.29015 -12.95240 -12.39040 -12.10279 -11.93753 -11.91050 -11.58525 -11.48901 -11.29185 -11.16614 -10.96475 -10.84931 -10.81154 -10.69340 -10.45043 -10.38159 -10.19090 -9.85608 -9.64947 -9.29310 -9.21781 -9.03110 -8.57271 -7.89258 -6.16824 -4.22624 0.70787 1.26393 2.33447 2.55477 2.81188 2.91014 3.25093 3.32540 3.34623 3.42275 3.55955 3.98880 4.11729 4.33365 4.34694 4.35924 4.41941 4.52379 4.63382 4.70568 4.82556 4.88245 4.99391 5.09425 5.13790 5.29102 5.51127 5.53035 5.57779 5.63227 5.73564 5.87954 5.95112 6.01716 6.06338 6.17157 6.25658 6.34488 6.43762 6.59306 6.69041 6.83271 7.03460 7.55739 7.57362 7.78857 7.80599 8.18616 8.46180 8.73585 8.81224 9.44168 10.92858 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.002446 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.045659 B =11444.997904 C =13551.144955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.032 4.032 3 C -0.183 4.183 4 C -0.020 4.020 5 C 0.600 3.400 6 O -0.499 6.499 7 N -0.661 5.661 8 C 0.089 3.911 9 C -0.079 4.079 10 C -0.139 4.139 11 C 0.597 3.403 12 O -0.558 6.558 13 N -0.634 5.634 14 C 0.099 3.901 15 C 0.036 3.964 16 C -0.518 4.518 17 H 0.064 0.936 18 C 0.069 3.931 19 N -0.884 5.884 20 Si 0.896 3.104 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.101 3.899 25 C -0.100 4.100 26 C -0.096 4.096 27 N -0.334 5.334 28 O 0.122 5.878 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.183 0.817 33 H 0.412 0.588 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.264 0.736 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.580 -18.193 -3.019 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 C -0.205 4.205 4 C -0.179 4.179 5 C 0.384 3.616 6 O -0.371 6.371 7 N -0.311 5.311 8 C 0.001 3.999 9 C -0.117 4.117 10 C -0.143 4.143 11 C 0.385 3.615 12 O -0.438 6.438 13 N -0.367 5.367 14 C -0.024 4.024 15 C 0.016 3.984 16 C -0.556 4.556 17 H 0.082 0.918 18 C -0.135 4.135 19 N -0.521 5.521 20 Si 0.723 3.277 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.020 4.020 25 C -0.139 4.139 26 C -0.136 4.136 27 N -0.036 5.036 28 O 0.046 5.954 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.201 0.799 33 H 0.249 0.751 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.293 -18.768 -2.891 24.382 hybrid contribution -0.609 1.148 -0.362 1.349 sum -15.902 -17.620 -3.253 23.956 Atomic orbital electron populations 1.20403 0.83205 1.04990 1.04613 1.24529 0.96624 0.85276 1.03040 1.22476 0.89530 1.01836 1.06678 1.23419 0.96583 0.90146 1.07753 1.16859 0.81203 0.86505 0.77031 1.90877 1.86275 1.12198 1.47719 1.44366 1.02675 1.09884 1.74192 1.22875 0.83329 0.94471 0.99258 1.23952 0.90062 0.94572 1.03113 1.23185 0.93353 0.97121 1.00680 1.17742 0.86936 0.80232 0.76582 1.90651 1.33134 1.67149 1.52868 1.49891 1.14559 1.02620 1.69585 1.23724 0.94251 0.83572 1.00828 1.20395 0.88913 0.92410 0.96648 1.20889 1.21694 0.93042 1.19966 0.91804 1.25031 0.95097 0.98977 0.94422 1.69953 1.22352 1.34923 1.24824 0.86537 0.78539 0.84084 0.78541 1.20506 1.21135 1.19691 1.23390 0.93360 0.84481 1.00805 1.24466 0.93358 0.99676 0.96432 1.24442 0.93116 0.99426 0.96573 1.74162 0.97469 1.15495 1.16448 1.84773 1.11069 1.33534 1.66035 0.89579 0.88735 0.88757 0.79939 0.75111 0.89799 0.89702 0.90728 0.92030 0.91259 0.92604 0.92272 0.90688 0.89071 0.90476 0.90302 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.18 10.45 36.01 0.38 0.20 16 2 C -0.03 -0.21 7.47 -35.35 -0.26 -0.48 16 3 C -0.18 -1.64 10.92 -39.08 -0.43 -2.06 16 4 C -0.02 -0.23 7.19 -82.53 -0.59 -0.82 16 5 C 0.60 8.07 7.85 -12.11 -0.10 7.97 16 6 O -0.50 -8.33 16.83 5.37 0.09 -8.24 16 7 N -0.66 -7.85 5.71 -64.77 -0.37 -8.22 16 8 C 0.09 1.18 3.87 -148.40 -0.57 0.61 16 9 C -0.08 -1.02 7.80 -26.71 -0.21 -1.23 16 10 C -0.14 -2.27 3.26 -172.25 -0.56 -2.83 16 11 C 0.60 12.07 8.19 -10.99 -0.09 11.98 16 12 O -0.56 -12.70 17.87 5.55 0.10 -12.60 16 13 N -0.63 -13.21 3.69 -185.05 -0.68 -13.89 16 14 C 0.10 2.12 7.99 -8.37 -0.07 2.06 16 15 C 0.04 0.84 3.80 -91.13 -0.35 0.49 16 16 C -0.52 -13.22 8.82 -34.44 -0.30 -13.52 16 17 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 18 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 19 N -0.88 -24.30 13.26 55.43 0.74 -23.56 16 20 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 C 0.10 2.13 8.17 -8.51 -0.07 2.06 16 25 C -0.10 -1.48 7.75 -28.17 -0.22 -1.70 16 26 C -0.10 -1.48 7.74 -28.18 -0.22 -1.69 16 27 N -0.33 -3.48 11.84 33.30 0.39 -3.09 16 28 O 0.12 1.04 11.18 17.26 0.19 1.24 16 29 H 0.09 0.11 8.14 -51.92 -0.42 -0.32 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.41 3.93 8.59 -40.82 -0.35 3.58 16 34 H 0.08 0.99 7.97 -51.93 -0.41 0.58 16 35 H 0.08 1.02 7.97 -51.93 -0.41 0.61 16 36 H 0.07 1.59 8.10 -51.93 -0.42 1.17 16 37 H 0.06 1.34 7.77 -51.93 -0.40 0.94 16 38 H 0.07 1.78 8.11 -51.93 -0.42 1.36 16 39 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.07 1.51 8.10 -51.92 -0.42 1.09 16 42 H 0.09 1.48 7.84 -51.93 -0.41 1.08 16 43 H 0.08 1.04 7.97 -51.93 -0.41 0.62 16 44 H 0.08 1.12 7.97 -51.93 -0.41 0.71 16 45 H 0.09 1.59 7.47 -51.93 -0.39 1.20 16 LS Contribution 392.55 15.07 5.92 5.92 Total: -1.00 -31.99 392.55 -8.53 -40.52 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.12 Total: 4.01 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -3.76 Total: 2.72 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.08 Total: -48.76 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: 0.38 Total: -19.61 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.99 -8.53 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270026003.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.090 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds